Adaptive broadcast cancellation query mechanism for unstructured networks

The availability of cheap wireless sensors boosted the emergence of unstructured networks using wireless technologies with decentralised administration. However, a simple task such as learning the temperature needs a discovery service to find a thermometer among all the sensors. In general, resource discovery relies on flooding mechanisms that waste energy and compromises system availability. Energy efficient strategies limit the exploration area, but with a significant impact on latency. The paper proposes ABC (Adaptive Broadcast Cancellation), a new algorithm that uses the knowledge acquired in previous discoveries to accelerate queries towards the resource. Knowledge is stored in a variation of Bloom filters, thus contributing for an efficient utilization of the sensors limited memory.This work is financed by the FCT − Fundação para a Ciência e a Tecnologia (Portuguese Foundation for Science and Technology) within project UID/EEA/50014/2013.info:eu-repo/semantics/publishedVersio

Computation of a three-dimensional flow in a square microchannel: a comparison between a particle method and a finite volume method

Traditional grid-based numerical methods, such as finite volume method (FVM), are not suitable to simulate multiphase biofluids (such as blood) at the microscale level. Alternatively, meshfree Lagrangian methods can deal with two or more finely dispersed phases moving relatively to each other. The Moving Particle Semi-Implicit Method (MPS), used in this study, is a deterministic particle method based on a Lagrangian technique to simulate incompressible flows. The advantages of particle methods over traditional grid-based numerical methods have motivated several researchers to implement them into a wide range of studies in computational biomicrofluidics. The main aim of this paper is to evaluate the accuracy of the MPS method by comparing it with numerical simulations performed by an FVM. Hence, simulations of a Newtonian fluid flowing through a constriction were performed for both methods. For the MPS, a section of the channel of 3011.511.5 m was simulated using periodic boundary conditions. The obtained results have provided indications that, if the initial particle distance is sufficiently small, the MPS method can calculate accurately velocity profiles in the proposed channel.The authors acknowledge the financial support provided by PTDC/SAU-ENB/116929/2010 and EXPL/EMSSIS/2215/2013 from FCT (Science and Technology Foundation), COMPETE, QREN and European Union (FEDER). D. Bento acknowledge the financial support provided by SFRH/BD/91192/2012 from FCT (Science and Technology Foundation), COMPETE, QREN and European Union (FEDER). The authors are also very grateful to Dr. Alberto Gambaruto (Bristol University) for helpful explanations and suggestions regarding the MPS method.info:eu-repo/semantics/publishedVersio

Micro/nano devices for blood analysis

[Excerpt] The development of microdevices for blood analysis is an interdisciplinary subject that demandsan integration of several research fields such as biotechnology, medicine, chemistry, informatics, optics,electronics, mechanics, and micro/nanotechnologies.Over the last few decades, there has been a notably fast development in the miniaturization ofmechanical microdevices, later known as microelectromechanical systems (MEMS), which combineelectrical and mechanical components at a microscale level. The integration of microflow and opticalcomponents in MEMS microdevices, as well as the development of micropumps and microvalves,have promoted the interest of several research fields dealing with fluid flow and transport phenomenahappening at microscale devices. [...

A simple microfluidic device for the deformability assessment of blood cells in a continuous flow

Blood flow presents several interesting phenomena in microcirculation that can be used to develop microfluidic devices capable to promote blood cells separation and analysis in continuous flow. In the last decade there have been numerous microfluidic studies focused on the deformation of red blood cells (RBCs) flowing through geometries mimicking microvessels. In contrast, studies focusing on the deformation of white blood cells (WBCs) are scarce despite this phenomenon often happens in the microcirculation. In this work, we present a novel integrative microfluidic device able to perform continuous separation of a desired amount of blood cells, without clogging or jamming, and at the same time, capable to assess the deformation index (DI) of both WBCs and RBCs. To determine the DI of both WBCs and RBCs, a hyperbolic converging microchannel was used, as well as a suitable image analysis technique to measure the DIs of these blood cells along the regions of interest. The results show that the WBCs have a much lower deformability than RBCs when subjected to the same in vitro flow conditions, which is directly related to their cytoskeleton and nucleus contents. The proposed strategy can be easily transformed into a simple and inexpensive diagnostic microfluidic system to simultaneously separate and assess blood cells deformability.The authors acknowledge the financial support provided by PTDC/SAU-ENB/116929/2010 and EXPL/EMS-SIS/ 2215/2013 from FCT (Fundação para a Ciência e a Tecnologia), COMPETE, QREN and European Union (FEDER). R. O. Rodrigues, D. Pinho and V. Faustino acknowledge respectively, the PhD scholarships SFRH/BD/97658/2013, SFRH/BD/89077/2012 and SFRH/BD/99696/ 2014 granted by FCT. The authors would also like to thank Dr. Ângela Fernandes for providing the blood samples and Dr. Ricardo Calhelha for supplying the tissue culture medium used in this work.info:eu-repo/semantics/publishedVersio

Low-cost multifunctional vacuum chamber for manufacturing PDMS based composites

Polydimethylsiloxane (PDMS) is one of the best known elastomers and has been used in several areas of activity, due to its excellent characteristics and properties, such as biocompatibility, flexibility, optical transparency and chemical stability. Furthermore, PDMS modified with other materials promotes the desired changes to broaden its range of applications in various fields of science. However, the heating, mixing and degassing steps of the manufacturing process have not received much attention in recent years when it comes to blending with solid materials. For instance, PDMS has been extensively studied in combination with waxes, which are frequently in a solid state at room temperature and as a result the interaction and manufacturing process are extremely complex and can compromise the desired material. Thus, in this work it is proposed a multifunctional vacuum chamber (MVC) with the aim to improve and accelerate the manufacturing process of PDMS composites combined with additives, blends and different kinds of solid materials. The MVC developed in this work allows to control the mixing speed parameters, temperature control and internal pressure. In addition, it is a low cost equipment and can be used for other possible modifications with different materials and processes with the ability to control those parameters. As a result, samples fabricated by using the MVC can achieve a time improvement over 133% at the heating and mixing step and approximately 200% at the last degassing step. Regarding the complete manufacturing process, it is possible to achieve an improvement over 150%, when compared with the conventional manufacturing process. When compared to maximum tensile strength, specimens manufactured using the MVC have shown a 39% and 65% improvement in maximum strain. The samples have also shown a 9% improvement in transparency at room temperature and 12% at a temperature of about 75 °C. It should be noted that the proposed MVC can be used for other blends and manufacturing processes where it is desirable to control the temperature, agitation speed and pressure.This research was partially funded by Portuguese national funds of FCT/MCTES (PIDDAC) through the base funding from the following research units: UIDB/00690/2020 (CIMO) and UIDB/04077/2020 (MEtRICs). The authors are grateful for the funding of ANI, FCT and CIMO through the projects POCI-01-02B7-FEDER-069844, and EXPL2021CIMO_01, respectively. The authors are also grateful for the partial funding of FCT through the projects EXPL/EMEEME/0732/2021, NORTE-01-0145-FEDER-030171 (PTDC/EMD-EMD/30171/2017) funded by COMPETE2020, NORTE2020, PORTUGAL2020, and FEDER

Preliminary evaluation of a microfluidic device for blood separation and deformation assessment

This work was supported by FCT with the reference project UID/EEA/04436/2013, by FEDER funds through the COMPETE 2020 – Programa Operacional Competitividade e Internacionalização (POCI) with the reference project POCI-01- 0145-FEDER- 006941. V. Faustino and S.O. Catarino thank, respectively, the FCT for the grants SFRH/BD/99696/2014 and SFRH/BPD/108889/2015, supported by national funds from Ministérios da Ciência, Tecnologia e Ensino Superior and by FSE through the POCH - Programa Operacional Capital Humano

Bubbles moving in blood flow in a microchannel network: the effect on the local hematocrit

Air inside of blood vessels is a phenomenon known as gas embolism. During the past years, studies have been performed to assess the influence of air bubbles in microcirculation. In this study, we investigated the flow of bubbles in a microchannel network with several bifurcations, mimicking part of a capillary system. Thus, two working fluids were used, composed by sheep red blood cells (RBCs) suspended in a Dextran 40 solution with different hematocrits (5% and 10%). The experiments were carried out in a polydimethylsiloxane (PDMS) microchannel network fabricated by a soft lithography. A high-speed video microscopy system was used to obtain the results for a blood flow rate of 10 µL/min. This system enables the visualization of bubble formation and flow along the network. The results showed that the passage of air bubbles strongly influences the cell’s local concentration, since a higher concentration of cells was observed upstream of the bubble, whereas a lower local hematocrit was visualized at the region downstream of the bubble. In bifurcations, bubbles may split asymmetrically, leading to an uneven distribution of RBCs between the outflow branches.This research was funded by Portuguese national funds of FCT/MCTES (PIDDAC) through the base funding from the following research units: UIDB/00532/2020 (Transport Phenomena Research Center—CEFT). UIDB/04077/2020 (Research Center (Mechanical Engineering and Resource Sustainability Center—MEtRICs). The authors are also grateful for the partial funding of FCT through the projects PTDC/SAU-ENB/116929/2010, POCI-01-0145-FEDER-016861 (ref: PTDC/QEQ-FTT/4287/2014), NORTE-01-0145-FEDER-029394 and NORTE-01-0145-FEDER-030171 funded by COMPETE2020, NORTE2020. PORTUGAL2020 and FEDER. D. Bento acknowledges the PhD scholarship SFRH/BD/91192/2012 granted by FCT

A Passive Microfluidic Device Based on Crossflow Filtration for Cell Separation Measurements: A Spectrophotometric Characterization

Microfluidic devices have been widely used as a valuable research tool for diagnostic applications. Particularly, they have been related to the successful detection of different diseases and conditions by assessing the mechanical properties of red blood cells (RBCs). Detecting deformability changes in the cells and being able to separate those cells may be a key factor in assuring the success of detection of some blood diseases with diagnostic devices. To detect and separate the chemically modified RBCs (mimicking disease-infected RBCs) from healthy RBCs, the present work proposes a microfluidic device comprising a sequence of pillars with different gaps and nine different outlets used to evaluate the efficiency of the device by measuring the optical absorption of the collected samples. This latter measurement technique was tested to distinguish between healthy RBCs and RBCs chemically modified with glutaraldehyde. The present study indicates that it was possible to detect a slight differences between the samples using an optical absorption spectrophotometric setup. Hence, the proposed microfluidic device has the potential to perform in one single step a partial passive separation of RBCs based on their deformability.Research supported by FCT with the reference projects POCI-01-0145-FEDER-016861 (PTDC/QEQ-FTT/4287/2014), NORTE-01-0145-FEDER-029394 (PTDC/EMD-EMD/29394/2017), NORTE-01-0145-FEDER-030171 (PTDC/EME-SIS/30171/2017), UID/EEA/04436/2013, by FEDER funds through the COMPETE 2020, NORTE2020, PORTUGAL2020-Programa Operacional Competitividade e Internacionalizacao (POCI) with the reference project POCI-01-0145-FEDER-006941 and by the NORTE-01-0145-FEDER-028178 (PTDC/EEI-EEE/28178/2017) project, funded 85% from Programa Operacional Regional do Norte and 15% from FCT.info:eu-repo/semantics/publishedVersio

Red blood cells tracking and cell-free layer formation in a microchannel with hyperbolic contraction: a CFD model validation

Background and Objective: In recent years, progress in microfabrication technologies has attracted the attention of researchers across disciplines. Microfluidic devices have the potential to be developed into powerful tools that can elucidate the biophysical behavior of blood flow in microvessels. Such devices can also be used to separate the suspended physiological fluid from whole in vitro blood, which includes cells. Therefore, it is essential to acquire a detailed description of the complex interaction between erythrocytes (red blood cells; RBCs) and plasma. RBCs tend to undergo axial migration caused by occurrence of the Fåhræus-Lindqvist effect. These dynamics result in a cell-free layer (CFL), or a low volume fraction of cells, near the vessel wall. The aim of the paper is to develop a numerical model capable of reproducing the behavior of multiphase flow in a microchannel obtained under laboratory conditions and to compare two multiphase modelling techniques Euler-Euler and Euler-Lagrange. Methods: In this work, we employed a numerical Computational Fluid Dynamics (CFD) model of the blood flow within microchannels with two hyperbolic contraction shapes. The simulation was used to reproduce the blood flow behavior in a microchannel under laboratory conditions, where the CFL formation is visible downstream of the hyperbolic contraction. The multiphase numerical model was developed using Euler-Euler and hybrid Euler-Lagrange approaches. The hybrid CFD simulation of the RBC transport model was performed using a Discrete Phase Model. Blood was assumed to be a nonhomogeneous mixture of two components: dextran, whose properties are consistent with plasma, and RBCs, at a hematocrit of 5% (percent by volume of RBCs). Results: The results show a 5 μm thick CFL in a microchannel with a broader contraction and a 35 μm thick CFL in a microchannel with a narrower contraction. The RBC volume fraction in the CFL is less than 2%, compared to 7–8% in the core flow. The results are consistent for both multiphase simulation techniques used. The simulation results were then validated against the experimentally-measured CFL in each of the studied microchannel geometries. Conclusions: Reasonable agreement between experiments and simulations was achieved. A validated model such as the one tested in this study can expedite the microchannel design process by minimizing the need to prefabricate prototypes and test them under laboratory conditions.The work was partially supported by the Faculty of Energy and Environmental Engineering, Silesian University of Technology (SUT) within Ministry of Education and Science (Poland) statutory research funding scheme (MG, ZO) and by the Silesian University of Technology rector’s pro-quality grants No. 02/040/RGJ21/1011 (SS) and 08/060/RGJ21/1017 (ZO) and National Center of Science (Poland) No. 2017/27/B/ST8/01046 (BM). Rui Lima and João M. Miranda were partially funded by Portuguese national funds of FCT/MCTES (PIDDAC) through the base funding from the following research units: UIDB/00532/2020 (Transport Phenomena Research Center CEFT) and UIDB/04077/2020 (MEtRICs)