4 research outputs found

    Changes in Soil Arthropod Abundance and Community Structure across a Poplar Plantation Chronosequence in Reclaimed Coastal Saline Soil

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    Poplar plantations have the capacity to improve the properties of soils in muddy coastal areas; however, our understanding of the impacts of plantation development on soil arthropods remains limited. For this study, we determined the community dynamics of soil dwelling arthropods across poplar plantations of different ages (5-, 10-, and 21-years) over the course of one year in Eastern Coastal China. The total abundance of soil arthropods differed with stand development. Further, there were some interactions that involved the sampling date. On average, total abundance was highest in the 10-year-old stands and lowest in the 5-year-old stands. Total abundance exhibited strong age-dependent trends in June and September, but not in March or December. The abundance of Prostigmata and Oribatida increased in the 5- to 21-year-old stands, with the highest levels being in the 10-year-old stands. The abundance of Collembola increased with stand development; however, the stand age had no significant impact on the abundance of epedapic, hemiedaphic, and euedaphic Collembola. Order richness (Hill number q = 0) curve confidence intervals overlapped among three stand ages. Shannon and Simpson diversity (Hill numbers q = 1 and q = 2) differed between 10- and 21-year-old stand age. They showed almost similar trends, and the highest and lowest values were recorded in the 21- and 10-year-old stand ages, respectively. Permutational multivariate analysis of variance demonstrated that composition also varied significantly with the sampling date and stand age, and the 10-year-old stands that were sampled in June stood well-separated from the others. Indicator analysis revealed that Scolopendromorpha and Prostigmata were indicators in June for the 10-year-old stands, while Collembola were indicators for the 21-year-old stands sampled in September. Our results highlight that both stand development and climate seasonality can significantly impact soil arthropod community dynamics in the reclaimed coastal saline soils of managed poplar plantations

    Transcriptomic but not genomic variability confers phenotype of breast cancer stem cells

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    Abstract Background Breast cancer stem cells (BCSCs) are considered responsible for cancer relapse and drug resistance. Understanding the identity of BCSCs may open new avenues in breast cancer therapy. Although several discoveries have been made on BCSC characterization, the factors critical to the origination of BCSCs are largely unclear. This study aimed to determine whether genomic mutations contribute to the acquisition of cancer stem-like phenotype and to investigate the genetic and transcriptional features of BCSCs. Methods We detected potential BCSC phenotype-associated mutation hotspot regions by using whole-genome sequencing on parental cancer cells and derived serial-generation spheres in increasing order of BCSC frequency, and then performed target deep DNA sequencing at bulk-cell and single-cell levels. To identify the transcriptional program associated with BCSCs, bulk-cell and single-cell RNA sequencing was performed. Results By using whole-genome sequencing of bulk cells, potential BCSC phenotype-associated mutation hotspot regions were detected. Validation by target deep DNA sequencing, at both bulk-cell and single-cell levels, revealed no genetic changes specifically associated with BCSC phenotype. Moreover, single-cell RNA sequencing showed profound transcriptomic variability in cancer cells at the single-cell level that predicted BCSC features. Notably, this transcriptomic variability was enriched during the transcription of 74 genes, revealed as BCSC markers. Breast cancer patients with a high risk of relapse exhibited higher expression levels of these BCSC markers than those with a low risk of relapse, thereby highlighting the clinical significance of predicting breast cancer prognosis with these BCSC markers. Conclusions Transcriptomic variability, not genetic mutations, distinguishes BCSCs from non-BCSCs. The identified 74 BCSC markers have the potential of becoming novel targets for breast cancer therapy
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