Software visualization

Software visualization is a significant force in software engineering. As the sizes of software systems are becoming larger and more complex, program comprehension is becoming more difficult. The tasks of program comprehension involve implementation, maintenance, testing, debugging, mental model construction and verification. Software visualization is one promised way to support the tasks of program comprehension. Through software visualization, graphics and animations are built to help illustrate and present the computer program. In recent years, many related visualization techniques have been developed and used to build visualization tools. The major goal of visualization tools is to support program comprehension

Extremal dependence of copulas: a tail density approach

Abstract The extremal dependence of a random vector describes the tail behaviors of joint probabilities of the random vector with respect to that of its margins, and has been often studied by using the tail dependence function of its copula. A tail density approach is introduced in this paper to analyze extremal dependence of the copulas that are specified only by densities. The relation between the copula tail densities and regularly varying densities are established, and the tail densities of Archimedean and t copulas are derived explicitly. The tail density approach becomes especially effective for extremal dependence analysis on a vine copula, for which the tail density can be written recursively in the product form of tail densities of bivariate baseline copulas and densities of bivariate linking copulas

Curcumin ameliorates renal impairment in a diabetic rat model

Purpose: To investigate the molecular mechanisms of action of curcumin in regulating kidney injury in diabetic rats.Methods: Diabetes was induced in male Wistar rats by intraperitoneal administration of streptozotocin (STZ). The rats were divided into four groups, labelled as follows: blank control, positive control of curcumin-untreated STZ-rats, curcumin-treated STZ-rats (20 mg/kg), and curcumin-treated STZ-rats (50 mg/kg). After 24 weeks, blood glucose, HbA1c, mean arterial pressure (MAP), heart rates, and body weights were measured. Fasting blood samples were also collected for albumin, lipocalin-2, osteopontin, and kidney-injury-molecule 1 (KIM1) The samples were also evaluated by enzyme linked immunosorbent assay (ELISA). Rat kidneys were isolated for assessment of renal impairment by haematoxylin and eosin staining (H&E), TUNEL assays, polymerase chain reaction (PCR), and western blotting.Results: Compared with STZ group, STZ + Cur (50 mg/kg) group significantly decreased blood glucose (284.57 ± 4.28 mg/dL, p < 0.01 vs. STZ), HbA1c (5.22 ± 0.33 %, p < 0.01 vs. STZ), and MAP (76 ± 2 mmHg, p < 0.05 vs. STZ), heart rate (300 ± 6 bpm, p < 0.05 vs. STZ), and body weight (356 ± 6 g, p < 0.01 vs. STZ) were significantly increased. Kidney protein index was significantly increased, indicating improvement of renal pathological damage. The inflammatory and apoptotic cells were less than that of the STZ group in the renal tissues. The mRNA abundance and relative protein expression levels of Wnt 5a and β-catenin were also enhanced. Curcumin regulation of the Wnt signal pathway was inhibited by protease inhibitor, XAV-939.Conclusion: These results demonstrated that curcumin treatment in diabetic rats alleviates renal damage by regulating Wnt signal pathway.Keywords: Curcumin, Renal impairment, Diabetes, Wnt signal pathwa

1D-Touch: NLP-Assisted Coarse Text Selection via a Semi-Direct Gesture

Existing text selection techniques on touchscreen focus on improving the control for moving the carets. Coarse-grained text selection on word and phrase levels has not received much support beyond word-snapping and entity recognition. We introduce 1D-Touch, a novel text selection method that complements the carets-based sub-word selection by facilitating the selection of semantic units of words and above. This method employs a simple vertical slide gesture to expand and contract a selection area from a word. The expansion can be by words or by semantic chunks ranging from sub-phrases to sentences. This technique shifts the concept of text selection, from defining a range by locating the first and last words, towards a dynamic process of expanding and contracting a textual semantic entity. To understand the effects of our approach, we prototyped and tested two variants: WordTouch, which offers a straightforward word-by-word expansion, and ChunkTouch, which leverages NLP to chunk text into syntactic units, allowing the selection to grow by semantically meaningful units in response to the sliding gesture. Our evaluation, focused on the coarse-grained selection tasks handled by 1D-Touch, shows a 20% improvement over the default word-snapping selection method on Android

Phase evolution and superconductivity enhancement in Se-substituted MoTe2_2 thin films

The strong spin$-$orbit coupling (SOC) and numerous crystal phases in few$-$layer transition metal dichalcogenides (TMDCs) MX$_2$ (M$=$W, Mo, and X$=$Te, Se, S) has led to a variety of novel physics, such as Ising superconductivity and quantum spin Hall effect realized in monolayer 2H$-$ and Td$-$MX$_2$, respectively. Consecutive tailoring of the MX$_2$ structure from 2H to Td phase may realize the long$-$sought topological superconductivity in one material system by incorporating superconductivity and quantum spin Hall effect together. In this work, by combing Raman spectrum, X-ray photoelectron spectrum (XPS), scanning transmission electron microscopy imaging (STEM) as well as electrical transport measurements, we demonstrate that a consecutively structural phase transitions from Td to 1T$'$ to 2H polytype can be realized as the Se-substitution concentration increases. More importantly, the Se$-$substitution has been found to notably enhance the superconductivity of the MoTe$_2$ thin film, which is interpreted as the introduction of the two$-$band superconductivity. The chemical constituent induced phase transition offers a new strategy to study the s$_{+-}$ superconductivity and the possible topological superconductivity as well as to develop phase$-$sensitive devices based on MX$_2$ materials.Comment: 27 pages, 5 figure

Emerging trends and focus of research on the relationship between traumatic brain injury and gut microbiota: a visualized study

BackgroundTraumatic brain injury (TBI) is one of the most serious types of trauma and imposes a heavy social and economic burden on healthcare systems worldwide. The development of emerging biotechnologies is uncovering the relationship between TBI and gut flora, and gut flora as a potential intervention target is of increasing interest to researchers. Nevertheless, there is a paucity of research employing bibliometric methodologies to scrutinize the interrelation between these two. Therefore, this study visualized the relationship between TBI and gut flora based on bibliometric methods to reveal research trends and hotspots in the field. The ultimate objective is to catalyze progress in the preclinical and clinical evolution of strategies for treating and managing TBI.MethodsTerms related to TBI and gut microbiota were combined to search the Scopus database for relevant documents from inception to February 2023. Visual analysis was performed using CiteSpace and VOSviewer.ResultsFrom September 1972 to February 2023, 2,957 documents published from 98 countries or regions were analyzed. The number of published studies on the relationship between TBI and gut flora has risen exponentially, with the United States, China, and the United Kingdom being representative of countries publishing in related fields. Research has formed strong collaborations around highly productive authors, but there is a relative lack of international cooperation. Research in this area is mainly published in high-impact journals in the field of neurology. The “intestinal microbiota and its metabolites,” “interventions,” “mechanism of action” and “other diseases associated with traumatic brain injury” are the most promising and valuable research sites. Targeting the gut flora to elucidate the mechanisms for the development of the course of TBI and to develop precisely targeted interventions and clinical management of TBI comorbidities are of great significant research direction and of interest to researchers.ConclusionThe findings suggest that close attention should be paid to the relationship between gut microbiota and TBI, especially the interaction, potential mechanisms, development of emerging interventions, and treatment of TBI comorbidities. Further investigation is needed to understand the causal relationship between gut flora and TBI and its specific mechanisms, especially the “brain-gut microbial axis.

Comprehensive analysis of mitogen-activated protein kinase cascades in chrysanthemum

Background Mitogen-activated protein kinase (MAPK) cascades, an important type of pathway in eukaryotic signaling networks, play a key role in plant defense responses, growth and development. Methods Phylogenetic analysis and conserved motif analysis of the MKK and MPK families in Arabidopsis thaliana, Helianthus annuus and Chrysanthemum morifolium classified MKK genes and MPK genes. qRT-PCR was used for the expression patterns of CmMPK and CmMKK genes, and yeast two-hybrid assay was applied to clear the interaction between CmMPKs and CmMKKs. Results We characterized six MKK genes and 11 MPK genes in chrysanthemum based on transcriptomic sequences and classified these genes into four groups. qRT-PCR analysis demonstrated that CmMKKs and CmMPKs exhibited various expression patterns in different organs of chrysanthemum and in response to abiotic stresses and phytohormone treatments. Furthermore, a yeast two-hybrid assay was applied to analyze the interaction between CmMKKs and CmMPKs and reveal the MAPK cascades in chrysanthemum. Discussion Our data led us to propose that CmMKK4-CmMPK13 and CmMKK2-CmMPK4 may be involved in regulating salt resistance and in the relationship between CmMKK9 and CmMPK6 and temperature stress

Efficacy and Safety of Tribendimidine Against Clonorchis sinensis

In this randomized open-label trial, tribendimidine was shown to have an efficacy comparable to praziquantel for the treatment of Clonorchis sinensis infection. Patients treated with praziquantel experienced significantly more adverse events than tribendimidine recipient

Soil-transmitted helminth infections and physical fitness in school-aged Bulang children in southwest China: results from a cross-sectional survey

BACKGROUND: Chronic soil-transmitted helminth (STH) infections have been associated with reduced physical fitness, but available evidence is limited. The aim of this cross-sectional survey was to assess the feasibility of measuring children's physical fitness and to relate it to STH infections. Our study was carried out among school-aged children of the Bulang ethnic group in rural southwest People's Republic of China (P.R. China). Standardized, quality-controlled methods were employed to determine STH infections (Kato-Katz technique), haemoglobin levels, anthropometry (body weight and height) and physical fitness (20-m shuttle run test). RESULTS: A compliance of 87% suggested good acceptance of the methods used. Among 69 children with complete data records, infection prevalence of Trichuris trichiura, Ascaris lumbricoides and hookworm were 81%, 44% and 6%, respectively. The maximum volume of oxygen that can be utilized within 1 min during exhaustive exercise (VO2 max estimate) of T. trichiura-infected children was 1.94 ml kg1 min1 lower than that of their non-infected counterparts (P = 0.005). Until exhaustion, T. trichiura-infected children had completed 6.14 20-m laps less (P = 0.004). Additionally, the mean VO2 max estimate of stunted children was lowered by 1.63 ml kg1 min1 (P = 0.002) and they completed 5.32 20-m laps less (P = 0.001) compared to children of normal stature. No significant association between stunting and infection with any STH species could be established. CONCLUSIONS: Implementation of physical fitness tests in rural, resource-constraint settings is feasible. The physical fitness of children who are stunted or infected with STHs, particularly T. trichiura, is significantly impaired. We have launched a larger study and will determine the dynamics of school-aged children's physical fitness over a 7-month period after administration of anthelminthic drugs