Lichens Bite the Dust : A Bioweathering Scenario in the Atacama Desert

Bioweathering mediated by microorganisms plays a significant role in biogeochemical cycles on global scales over geological timescales. Single processes induced by specific taxa have been described but could rarely be demonstrated for complex communities that dominate whole landscapes. The recently discovered grit crust of the coastal Atacama Desert, which is a transitional community between a cryptogamic ground cover and a rock-bound lithic assemblage, offers the unique chance to elucidate various bioweathering processes that occur simultaneously. Here, we present a bioweathering scenario of this biocenosis including processes such as penetration of the lithomatrix, microbial responses to wet-dry cycles, alkalinolysis, enzyme activity, and mineral re-localization. Frequently occurring fog, for example, led to a volume increase of microorganisms and the lithomatrix. This, together with pH shifts and dust accumulation, consequently results in biophysical breakdown and the formation of a terrestrial protopedon, an initial stage of pedogenesis fueled by the grit crust. © 2020 The Author(s

Genetic effects on gene expression across human tissues

Characterization of the molecular function of the human genome and its variation across individuals is essential for identifying the cellular mechanisms that underlie human genetic traits and diseases. The Genotype-Tissue Expression (GTEx) project aims to characterize variation in gene expression levels across individuals and diverse tissues of the human body, many of which are not easily accessible. Here we describe genetic effects on gene expression levels across 44 human tissues. We find that local genetic variation affects gene expression levels for the majority of genes, and we further identify inter-chromosomal genetic effects for 93 genes and 112 loci. On the basis of the identified genetic effects, we characterize patterns of tissue specificity, compare local and distal effects, and evaluate the functional properties of the genetic effects. We also demonstrate that multi-tissue, multi-individual data can be used to identify genes and pathways affected by human disease-associated variation, enabling a mechanistic interpretation of gene regulation and the genetic basis of diseas

Genetic effects on gene expression across human tissues

Characterization of the molecular function of the human genome and its variation across individuals is essential for identifying the cellular mechanisms that underlie human genetic traits and diseases. The Genotype-Tissue Expression (GTEx) project aims to characterize variation in gene expression levels across individuals and diverse tissues of the human body, many of which are not easily accessible. Here we describe genetic effects on gene expression levels across 44 human tissues. We find that local genetic variation affects gene expression levels for the majority of genes, and we further identify inter-chromosomal genetic effects for 93 genes and 112 loci. On the basis of the identified genetic effects, we characterize patterns of tissue specificity, compare local and distal effects, and evaluate the functional properties of the genetic effects. We also demonstrate that multi-tissue, multi-individual data can be used to identify genes and pathways affected by human disease-associated variation, enabling a mechanistic interpretation of gene regulation and the genetic basis of disease

Sulfur-Enriched Bone Char as Alternative P Fertilizer: Spectroscopic, Wet Chemical, and Yield Response Evaluation

Phosphorus- (P) rich bone char (BC) could be an alternative P fertilizer in sustainable agriculture; however, it has a low P solubility. Therefore, sulfur-enriched BC (BCplus) was tested for chemical composition and fertilization effects in a pot experiment. In BCplus sulfur, concentrations increased from <0.1% to 27% and pH decreased from 8.6 to 5.0. These modifications did not change P solubility in water, neutral ammonium citrate, and citric acid. A pot experiment with annual rye grass (Lolium multiflorum L.) and treatments without P (P0), BC, BCplus and triple superphosphate (TSP) was set up. The cumulative dry matter yield of the BC treatment was similar to P0, and that of BCplus similar to TSP. The plant P uptake was in the order P0 = BC < BCplus < TSP. Consequently, the apparent nutrient recovery efficiency differed significantly between BC (<3%), BCplus (10% to 15%), and TSP (>18%). The tested equilibrium extractions, regularly used to classify mineral P-fertilizers, failed to predict differences in plant yield and P uptake. Therefore, non-equilibrium extraction methods should be tested in combination with pot experiments. Additionally, particle-plant root scale analyses and long-term experiments are necessary to gain insights into fertilizer-plant interactions

Medium-energy microprobe station at the SXRMB of the CLS

Micro-XAFS and chemical imaging techniques have been widely applied for studies of heterogeneously distributed systems, mostly in hard X-ray (>5 keV) or in soft X-ray (<1.5 keV) energies. The microprobe endstation of the SXRMB (soft X-ray microcharacterization beamline) at the Canadian Light Source is optimized at the medium energy (1.7-5 keV), and it has been recently commissioned and is available for general users. The technical design and the performance (energy range, beam size and flux) of the SXRMB microprobe are presented. Examples in chemical imaging and micro-XAFS in the medium energy for important elements such as P, S and Ca for soil and biological samples are highlighted