Sun exposure drives Antarctic cryptoendolithic community structure and composition

AbstractThe harsh environmental conditions of the ice-free regions of Continental Antarctica are considered one of the closest Martian analogues on Earth. There, rocks play a pivotal role as substratum for life and endolithism represents a primary habitat for microorganisms when external environmental conditions become incompatible with active life on rock surfaces. Due to the thermal inertia of rock, the internal airspace of lithic substratum is where microbiota find a protected and buffered microenvironment, allowing life to spread throughout these regions with extreme temperatures and low water availability. The high degree of adaptation and specialization of the endolithic communities makes them highly resistant but scarsely resilient to any external perturbation and thus, any shifts in microbial community composition may serve as early-alarm systems of environmental perturbation, including climate change.Previous research concluded that altitude and distance from sea do not play as driving factors in shaping microbial abundance and diversity, while sun exposure was hypothesized as significant parameter influencing endolithic settlement and development. This study aims to explore our hypothesis that changes in sun exposure translate to shifts in community composition and abundances of main biological compartments (fungi, algae and bacteria) in the Antarctic cryptoendolithic communities. We performed a preliminary molecular survey, based on DGGE and qPCR tecniques, of 48 rocks with varying sun exposure, collected in Victoria Land along an altitudinal transect from 834 to 3100 m a.s.l.Our findings demonstrate that differences in sun radiation between north and south exposure influence temperature of rocks surface, availability of water and metabolic activity and also have significant impact on community composition and microbial abundance

Draft Genome Sequence of the Yeast Rhodotorula sp. Strain CCFEE 5036, Isolated from McMurdo Dry Valleys, Antarctica.

A draft genome sequence was assembled and annotated of the basidiomycetous yeast Rhodotorula sp. strain CCFEE 5036, isolated from Antarctic soil communities. The genome assembly is 19.07 megabases and encodes 6,434 protein-coding genes. The sequence will contribute to understanding the diversity of fungi inhabiting polar regions

Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities.

Antarctic cryptoendolithic communities are microbial ecosystems dwelling inside rocks of the Antarctic desert. We present the first 18 shotgun metagenomes from these communities to further characterize their composition, biodiversity, functionality, and adaptation. Future studies will integrate taxonomic and functional annotations to examine the pathways necessary for life to evolve in the extremes

Humidity and low pH boost occurrence of Onygenales fungi in soil at global scale

Soils are important reservoirs for potential human pathogens and opportunistic fungi such as the dermatophyte or dimorphic fungi in the order Onygenales. In soils, these taxa are decomposers but many of them have the potential to cause respiratory and skin diseases in humans and, in some cases, systemic infections. Even so, the factors that determine the biogeography and ecology of order Onygenales remain largely undocumented. To address this knowledge gap, we surveyed members of Onygenales from topsoil fungal communities at 235 sites across six continents and provided a first global atlas. We retrieved 4.3% of the total fungal sequences (∼420 Onygenales) across nine biomes ranging from deserts to tropical forests. This work advances our knowledge on the ecology and global distribution of order Onygenales and suggests the hypothesis that wet and acid soils support the larger proportions of these fungi, while their richness is constrained by aridity.C.C. and L.S. wish to thank the Italian National Program for Antarctic Research (PNRA) for supporting their research. M.D-B. is supported by a project from the Spanish Ministry of Science and Innovation (PID2020-115813RA-I00), and a project PAIDI 2020 from the Junta de Andalucía (P20_00879). Microbial distribution and colonization research in B.K.S. lab is funded by Australian Research Council (DP190103714). E.G. is supported by the European Research Council grant agreement 647038 (BIODESERT)

Integrity of the DNA and Cellular Ultrastructure of Cryptoendolithic Fungi in Space or Mars Conditions: A 1.5-Year Study at the International Space Station

The black fungi Cryomyces antarcticus and Cryomyces minteri are highly melanized and are resilient to cold, ultra-violet, ionizing radiation and other extreme conditions. These microorganisms were isolated from cryptoendolithic microbial communities in the McMurdo Dry Valleys (Antarctica) and studied in Low Earth Orbit (LEO), using the EXPOSE-E facility on the International Space Station (ISS). Previously, it was demonstrated that C. antarcticus and C. minteri survive the hostile conditions of space (vacuum, temperature fluctuations, and the full spectrum of extraterrestrial solar electromagnetic radiation), as well as Mars conditions that were simulated in space for a 1.5-year period. Here, we qualitatively and quantitatively characterize damage to DNA and cellular ultrastructure in desiccated cells of these two species, within the frame of the same experiment. The DNA and cells of C. antarcticus exhibited a higher resistance than those of C. minteri. This is presumably attributable to the thicker (melanized) cell wall of the former. Generally, DNA was readily detected (by PCR) regardless of exposure conditions or fungal species, but the C. minteri DNA had been more-extensively mutated. We discuss the implications for using DNA, when properly shielded, as a biosignature of recently extinct or extant life

Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes

Endolithic growth is one of the most spectacular microbial adaptations to extreme environmental constraints and the predominant life-form in the ice-free areas of Continental Antarctica. Although Antarctic endolithic microbial communities are known to host among the most resistant and extreme-adapted organisms, our knowledge on microbial diversity and composition in this peculiar niche is still limited. In this study, we investigated the diversity and structure of the fungal assemblage in the cryptoendolithic communities inhabiting sandstone using a meta-barcoding approach targeting the fungal Internal Transcribed Sequence region 1 (ITS1). Samples were collected from 14 sites in the Victoria Land, along an altitudinal gradient ranging from 1,000 to 3,300 m a.s.l. and from 29 to 96 km distance to coast. Our study revealed a clear dominance of a ‘core’ group of fungal taxa consistently present across all the samples, mainly composed of lichen-forming and Dothideomycetous fungi. Pareto-Lorenz curves indicated a very high degree of specialization (F0 approximately 95%), suggesting these communities are highly adapted but have limited ability to recover after perturbations. Overall, both fungal community biodiversity and composition did not show any correlation with the considered abiotic parameters, potentially due to strong fluctuations of environmental conditions at local scales

Life beyond Earth: the antarctic black fungus in planetary simulations

The cryptoendolithic black fungus Cryomyces antarcticus inhabits the ice-free area of the Antarctic McMurdo Dry Valleys, one of the best terrestrial analogue environment for Mars. There, conditions on rock surface are often incompatible with life; hence, microbes develop within porous rocks as last chance for survival. The almost complete isolation over a timescale of evolutionary significance led to the evolution of unique, extremely adapted and resistant, genotypes. C. antarcticus is particularly skilled in stress tolerance being able to tolerate injuries well beyond the harsh conditions of its natural environment. Because of its uncommon resistance, the fungus has been chosen as eukaryotic model for astrobiological studies to test the endurance of eukaryotic cells to space conditions. In the experiment here reported, the fungus C. antarcticus was exposed, in the frame of the STARLIFE irradiation campaign, to different types and qualities of ionizing radiation with different linear energy transfer values (0.2 to 200 keV/µm). Irradiation with up to 1 kGy of accelerated He, Ar and Fe ions, and 55.57 kGy of gamma rays (60Cobalt). Single gene PCR, RAPD fingerprinting, qPCR and PMA coupled with qPCR analyses reveal minimal damage to DNA or plasma membranes induced by the treatments. This experiments further confirm the stunning stress tolerance of the fungus and its high relevance in astrobiological investigations, including the search for life on Mars, the reliability of the Lithopanspermia theory, and the estimation of planetary contamination risk

Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages

8openInternationalBothBackground Cryptoendolithic communities are microbial ecosystems dwelling inside porous rocks that are able to persist at the edge of the biological potential for life in the ice-free areas of the Antarctic desert. These regions include the McMurdo Dry Valleys, often accounted as the closest terrestrial counterpart of the Martian environment and thought to be devoid of life until the discovery of these cryptic life-forms. Despite their interest as a model for the early colonization by living organisms of terrestrial ecosystems and for adaptation to extreme conditions of stress, little is known about the evolution, diversity, and genetic makeup of bacterial species that reside in these environments. Using the Illumina Novaseq platform, we generated the first metagenomes from rocks collected in Continental Antarctica over a distance of about 350 km along an altitudinal transect from 834 up to 3100 m above sea level (a.s.l.). Results A total of 497 draft bacterial genome sequences were assembled and clustered into 269 candidate species that lack a representative genome in public databases. Actinobacteria represent the most abundant phylum, followed by Chloroflexi and Proteobacteria. The “Candidatus Jiangella antarctica” has been recorded across all samples, suggesting a high adaptation and specialization of this species to the harshest Antarctic desert environment. The majority of these new species belong to monophyletic bacterial clades that diverged from related taxa in a range from 1.2 billion to 410 Ma and are functionally distinct from known related taxa. Conclusions Our findings significantly increase the repertoire of genomic data for several taxa and, to date, represent the first example of bacterial genomes recovered from endolithic communities. Their ancient origin seems to not be related to the geological history of the continent, rather they may represent evolutionary remnants of pristine clades that evolved across the Tonian glaciation. These unique genomic resources will underpin future studies on the structure, evolution, and function of these ecosystems at the edge of life.openAlbanese, Davide; Coleine, Claudia; Rota-Stabelli, Omar; Onofri, Silvano; Tringe, Susannah G; Stajich, Jason E; Selbmann, Laura; Donati, ClaudioAlbanese, D.; Coleine, C.; Rota-Stabelli, O.; Onofri, S.; Tringe, S.G.; Stajich, J.E.; Selbmann, L.; Donati, C

Metagenomics untangles potential adaptations of Antarctic endolithic bacteria at the fringe of habitability

Survival and growth strategies of Antarctic endolithic microbes residing in Earth's driest and coldest desert remain virtually unknown. From 109 endolithic microbiomes, 4539 metagenome-assembled genomes were generated, 49.3 % of which were novel candidate bacterial species. We present evidence that trace gas oxidation and atmospheric chemosynthesis may be the prevalent strategies supporting metabolic activity and persistence of these ecosystems at the fringe of life and the limits of habitabilit