232 research outputs found
Differential Regulation of Primitive Myelopoiesis in the Zebrafish by Spi-1/Pu.1 and C/ebp1
The zebrafish has become a powerful tool for analysis of vertebrate hematopoiesis. Zebrafish, unlike mammals, have a robust primitive myeloid pathway that generates both granulocytes and macrophages. It is not clear how this unique primitive myeloid pathway relates to mammalian definitive hematopoiesis. In this study, we show that the two myeloid subsets can be distinguished using RNA in situ hybridization. Using a morpholino-antisense gene knockdown approach, we have characterized the hematopoietic defects resulting from knockdown of the myeloid transcription factor gene pu.1 and the unique zebrafish gene c/ebp1. Severe reduction of pu.1 resulted in complete loss of primitive macrophage development, with effects on granulocyte development only with maximal knockdown. Reduction of c/ebp1 did not ablate initial macrophage or granulocyte development, but resulted in loss of expression of the secondary granule gene lys C. These data reveal strong functional conservation of pu.1 between zebrafish primitive myelopoiesis and mammalian definitive myelopoiesis. Further, these results are consistent with a conserved role between c/ebp1 and mammalian C/EBPE, whose ortholog in zebrafish has not been identified. These studies validate the examination of zebrafish primitive myeloid development as a model for human myelopoiesis, and form a framework for identification and analysis of myeloid mutants.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/63190/1/zeb.2007.0505.pd
Efficient and transferable machine learning potentials for the simulation of crystal defects in bcc Fe and W
Data-driven, or machine learning (ML), approaches have become viable alternatives to semiempirical methods to construct interatomic potentials, due to their capacity to accurately interpolate and extrapolate from first-principles simulations if the training database and descriptor representation of atomic structures are carefully chosen. Here, we present highly accurate interatomic potentials suitable for the study of dislocations, point defects, and their clusters in bcc iron and tungsten, constructed using a linear or quadratic input-output mapping from descriptor space. The proposed quadratic formulation, called quadratic noise ML, differs from previous approaches, being strongly preconditioned by the linear solution. The developed potentials are compared to a wide range of existing ML and semiempirical potentials, and are shown to have sufficient accuracy to distinguish changes in the exchange-correlation functional or pseudopotential in the underlying reference data, while retaining excellent transferability. The flexibility of the underlying approach is able to target properties almost unattainable by traditional methods, such as the negative divacancy binding energy in W or the shape and the magnitude of the Peierls barrier of the
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screw dislocation in both metals. We also show how the developed potentials can be used to target important observables that require large time-and-space scales unattainable with first-principles methods, though we emphasize the importance of thoughtful database design and degrees of nonlinearity of the descriptor space to achieve the appropriate passage of information to large-scale calculations. As a demonstration, we perform direct atomistic calculations of the relative stability of
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dislocations loops and three-dimensional C15 clusters in Fe and find the crossover between the formation energies of the two classes of interstitial defects occurs at around 40 self-interstitial atoms. We also compute the kink-pair formation energy of the
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screw dislocation in Fe and W, finding good agreement with density functional theory informed line tension models that indirectly measure those quantities. Finally, we exploit the excellent finite-temperature properties to compute vacancy formation free energies with full anharmonicity in thermal vibrations. The presented potentials thus open up many avenues for systematic investigation of free-energy landscape of defects with ab initio accuracy
Measurements of and Production in + Collisions at = 200 GeV
We report measurements of charmed-hadron (, ) production cross
sections at mid-rapidity in + collisions at a center-of-mass energy of
200 GeV by the STAR experiment. Charmed hadrons were reconstructed via the
hadronic decays , and their charge conjugates,
covering the range of 0.62.0 GeV/ and 2.06.0 GeV/ for
and , respectively. From this analysis, the charm-pair production cross
section at mid-rapidity is = 170 45
(stat.) (sys.) b. The extracted charm-pair cross section is
compared to perturbative QCD calculations. The transverse momentum differential
cross section is found to be consistent with the upper bound of a Fixed-Order
Next-to-Leading Logarithm calculation.Comment: 15 pages, 16 figures. Revised version submitted to Phys. Rev.
Measurements of Dihadron Correlations Relative to the Event Plane in Au+Au Collisions at GeV
Dihadron azimuthal correlations containing a high transverse momentum (\pt)
trigger particle are sensitive to the properties of the nuclear medium created
at RHIC through the strong interactions occurring between the traversing parton
and the medium, i.e. jet-quenching. Previous measurements revealed a strong
modification to dihadron azimuthal correlations in Au+Au collisions with
respect to \pp\ and \dAu\ collisions. The modification increases with the
collision centrality, suggesting a path-length dependence to the jet-quenching
effect. This paper reports STAR measurements of dihadron azimuthal correlations
in mid-central (20-60\%) Au+Au collisions at \snn=200~GeV as a function of
the trigger particle's azimuthal angle relative to the event plane,
\phis=|\phit-\psiEP|. The azimuthal correlation is studied as a function of
both the trigger and associated particle \pt. The subtractions of the
combinatorial background and anisotropic flow, assuming Zero Yield At Minimum
(\zyam), are described. The away-side correlation is strongly modified, and the
modification varies with \phis, which is expected to be related to the
path-length that the away-side parton traverses. The pseudo-rapidity (\deta)
dependence of the near-side correlation, sensitive to long range \deta
correlations (the ridge), is also investigated. The ridge and jet-like
components of the near-side correlation are studied as a function of \phis.
The ridge appears to drop with increasing \phis while the jet-like component
remains approximately constant. ...Comment: 50 pages, 39 figures, 6 table
System size and energy dependence of near-side di-hadron correlations
Two-particle azimuthal () and pseudorapidity ()
correlations using a trigger particle with large transverse momentum () in
+Au, Cu+Cu and Au+Au collisions at =\xspace 62.4 GeV and
200~GeV from the STAR experiment at RHIC are presented. The \ns correlation is
separated into a jet-like component, narrow in both and
, and the ridge, narrow in but broad in .
Both components are studied as a function of collision centrality, and the
jet-like correlation is studied as a function of the trigger and associated
. The behavior of the jet-like component is remarkably consistent for
different collision systems, suggesting it is produced by fragmentation. The
width of the jet-like correlation is found to increase with the system size.
The ridge, previously observed in Au+Au collisions at = 200
GeV, is also found in Cu+Cu collisions and in collisions at
=\xspace 62.4 GeV, but is found to be substantially smaller at
=\xspace 62.4 GeV than at = 200 GeV for the
same average number of participants ().
Measurements of the ridge are compared to models.Comment: 17 pages, 14 figures, submitted to Phys. Rev.
Inclusive charged hadron elliptic flow in Au + Au collisions at = 7.7 - 39 GeV
A systematic study is presented for centrality, transverse momentum ()
and pseudorapidity () dependence of the inclusive charged hadron elliptic
flow () at midrapidity() in Au+Au collisions at
= 7.7, 11.5, 19.6, 27 and 39 GeV. The results obtained with
different methods, including correlations with the event plane reconstructed in
a region separated by a large pseudorapidity gap and 4-particle cumulants
(), are presented in order to investigate non-flow correlations and
fluctuations. We observe that the difference between and
is smaller at the lower collision energies. Values of , scaled by
the initial coordinate space eccentricity, , as a function
of are larger in more central collisions, suggesting stronger collective
flow develops in more central collisions, similar to the results at higher
collision energies. These results are compared to measurements at higher
energies at the Relativistic Heavy Ion Collider ( = 62.4 and 200
GeV) and at the Large Hadron Collider (Pb + Pb collisions at =
2.76 TeV). The values for fixed rise with increasing collision
energy within the range studied (). A comparison to
viscous hydrodynamic simulations is made to potentially help understand the
energy dependence of . We also compare the results to UrQMD
and AMPT transport model calculations, and physics implications on the
dominance of partonic versus hadronic phases in the system created at Beam
Energy Scan (BES) energies are discussed.Comment: 20 pages, 12 figures. Version accepted by PR
Observation of the antimatter helium-4 nucleus
High-energy nuclear collisions create an energy density similar to that of
the universe microseconds after the Big Bang, and in both cases, matter and
antimatter are formed with comparable abundance. However, the relatively
short-lived expansion in nuclear collisions allows antimatter to decouple
quickly from matter, and avoid annihilation. Thus, a high energy accelerator of
heavy nuclei is an efficient means of producing and studying antimatter. The
antimatter helium-4 nucleus (), also known as the anti-{\alpha}
(), consists of two antiprotons and two antineutrons (baryon
number B=-4). It has not been observed previously, although the {\alpha}
particle was identified a century ago by Rutherford and is present in cosmic
radiation at the 10% level. Antimatter nuclei with B < -1 have been observed
only as rare products of interactions at particle accelerators, where the rate
of antinucleus production in high-energy collisions decreases by about 1000
with each additional antinucleon. We present the observation of the antimatter
helium-4 nucleus, the heaviest observed antinucleus. In total 18
counts were detected at the STAR experiment at RHIC in 10 recorded Au+Au
collisions at center-of-mass energies of 200 GeV and 62 GeV per nucleon-nucleon
pair. The yield is consistent with expectations from thermodynamic and
coalescent nucleosynthesis models, which has implications beyond nuclear
physics.Comment: 19 pages, 4 figures. Submitted to Nature. Under media embarg
Studies of di-jet survival and surface emission bias in Au+Au collisions via angular correlations with respect to back-to-back leading hadrons
We report first results from an analysis based on a new multi-hadron
correlation technique, exploring jet-medium interactions and di-jet surface
emission bias at RHIC. Pairs of back-to-back high transverse momentum hadrons
are used for triggers to study associated hadron distributions. In contrast
with two- and three-particle correlations with a single trigger with similar
kinematic selections, the associated hadron distribution of both trigger sides
reveals no modification in either relative pseudo-rapidity or relative
azimuthal angle from d+Au to central Au+Au collisions. We determine associated
hadron yields and spectra as well as production rates for such correlated
back-to-back triggers to gain additional insights on medium properties.Comment: By the STAR Collaboration. 6 pages, 2 figure
An Experimental Exploration of the QCD Phase Diagram: The Search for the Critical Point and the Onset of De-confinement
The QCD phase diagram lies at the heart of what the RHIC Physics Program is
all about. While RHIC has been operating very successfully at or close to its
maximum energy for almost a decade, it has become clear that this collider can
also be operated at lower energies down to 5 GeV without extensive upgrades. An
exploration of the full region of beam energies available at the RHIC facility
is imperative. The STAR detector, due to its large uniform acceptance and
excellent particle identification capabilities, is uniquely positioned to carry
out this program in depth and detail. The first exploratory beam energy scan
(BES) run at RHIC took place in 2010 (Run 10), since several STAR upgrades,
most importantly a full barrel Time of Flight detector, are now completed which
add new capabilities important for the interesting physics at BES energies. In
this document we discuss current proposed measurements, with estimations of the
accuracy of the measurements given an assumed event count at each beam energy.Comment: 59 pages, 78 figure
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