Development of Sequence Tagged Microsatellite Site (STMS) markers in Azalea

A genomic library was constructed from DNA of two azalea genotypes: a Belgian pot azalea R. simsii hybrid Mevr. Van Belle and a Chinese R. simsii from Daoxian. An enrichment of microsatellite containing sequences was performed as in Van de Wiel et al. (1999). Fragments were sequenced and primers were designed that allow the amplification of the microsatellite repeat. About 220 microsatellite containing clones were selected from the enrichment procedure. Mainly dinucleotide repeats and some trinucleotide repeats were found. The selected primers were tested in a small set of reference varieties to check their value (specificity and polymorphic rate) and to set up the PCR-conditions. Five primer pairs have been tested, two of them gave a specific and polymorphic pattern. They were further screened by radioactive PCR on a selection of 5 plants from the azalea breeders gene pool which included the two genotypes used library construction. These 2 STMS markers uniquely identified the 5 plants

Methane-Oxidizing Seawater Microbial Communities from an Arctic Shelf

Marine microbial communities can consume dissolved methane before it can escape to the atmosphere and contribute to global warming. Seawater over the shallow Arctic shelf is characterized by excess methane compared to atmospheric equilibrium. This methane originates in sediment, permafrost, and hydrate. Particularly high concentrations are found beneath sea ice. We studied the structure and methane oxidation potential of the microbial communities from seawater collected close to Utqiagvik, Alaska, in April 2016. The in situ methane concentrations were 16.3 ± 7.2 nmol L−1 , approximately 4.8 times oversaturated relative to atmospheric equilibrium. The group of methaneoxidizing bacteria (MOB) in the natural seawater and incubated seawater was \u3e 97 % dominated by Methylococcales (γ -Proteobacteria). Incubations of seawater under a range of methane concentrations led to loss of diversity in the bacterial community. The abundance of MOB was low with maximal fractions of 2.5 % at 200 times elevated methane concentration, while sequence reads of non-MOB methylotrophs were 4 times more abundant than MOB in most incubations. The abundances of MOB as well as non-MOB methylotroph sequences correlated tightly with the rate constant (kox) for methane oxidation, indicating that non-MOB methylotrophs might be coupled to MOB and involved in community methane oxidation. In sea ice, where methane concentrations of 82 ± 35.8 nmol kg−1 were found, Methylobacterium (α-Proteobacteria) was the dominant MOB with a relative abundance of 80 %. Total MOB abundances were very low in sea ice, with maximal fractions found at the ice– snow interface (0.1 %), while non-MOB methylotrophs were present in abundances similar to natural seawater communities. The dissimilarities in MOB taxa, methane concentrations, and stable isotope ratios between the sea ice and water column point toward different methane dynamics in the two environments

Cooperative ordering of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinker ZapA

During bacterial cell division, the tubulin-homolog FtsZ forms a ring-like structure at the center of the cell. This Z-ring not only organizes the division machinery, but treadmilling of FtsZ filaments was also found to play a key role in distributing proteins at the division site. What regulates the architecture, dynamics and stability of the Z-ring is currently unknown, but FtsZ-associated proteins are known to play an important role. Here, using an in vitro reconstitution approach, we studied how the well-conserved protein ZapA affects FtsZ treadmilling and filament organization into large-scale patterns. Using high-resolution fluorescence microscopy and quantitative image analysis, we found that ZapA cooperatively increases the spatial order of the filament network, but binds only transiently to FtsZ filaments and has no effect on filament length and treadmilling velocity. Together, our data provides a model for how FtsZ-associated proteins can increase the precision and stability of the bacterial cell division machinery in a switch-like manner

Gas diffusion through columnar laboratory sea ice: implications for mixed-layer ventilation of CO₂ in the seasonal ice zone

Gas diffusion through the porous microstructure of sea ice represents a pathway for ocean–atmosphere exchange and for transport of biogenic gases produced within sea ice. We report on the experimental determination of the bulk gas diffusion coefficients, D, for oxygen (O2) and sulphur hexafluoride (SF6) through columnar sea ice under constant ice thickness conditions for ice surface temperatures between -4 and -12 °C. Profiles of SF6 through the ice indicate decreasing gas concentration from the ice/water interface to the ice/air interface, with evidence for solubility partitioning between gas-filled and liquid-filled pore spaces. On average, DSF6 inline image was 1.3 × 10-4 cm2 s-1 (±40%) and DO2 was 3.9 × 10-5 cm2 s-1 (±41%). The preferential partitioning of SF6 to the gas phase, which is the dominant diffusion pathway produced the greater rate of SF6 diffusion. Comparing these estimates of D with an existing estimate of the air–sea gas transfer through leads indicates that ventilation of the mixed layer by diffusion through sea ice may be negligible, compared to air–sea gas exchange through fractures in the ice pack, even when the fraction of open water is less than 1%

Seasonal Dynamics of Dissolved Iron on the Antarctic Continental Shelf: Late-Fall Observations From the Terra Nova Bay and Ross Ice Shelf Polynyas

Over the Ross Sea shelf, annual primary production is limited by dissolved iron (DFe) supply. Here, a major source of DFe to surface waters is thought to be vertical resupply from the benthos, which is assumed most prevalent during winter months when katabatic winds drive sea ice formation and convective overturn in coastal polynyas, although the impact of these processes on water-column DFe distributions has not been previously documented. We collected hydrographic data and water-column samples for trace metals analysis in the Terra Nova Bay and Ross Ice Shelf polynyas during April-May 2017 (late austral fall). In the Terra Nova Bay polynya, we observed intense katabatic wind events, and surface mixed layer depths varied from similar to 250 to similar to 600 m over lateral distances \u3c10 km; there vertical mixing was just starting to excavate the dense, iron-rich Shelf Waters, and there was also evidence of DFe inputs at shallower depths in the water column. In the Ross Ice Shelf polynya, wind speeds were lower, mixed layers were \u3c300 m deep, and DFe distributions were similar to previous, late-summer observations, with concentrations elevated near the seafloor. Corresponding measurements of dissolved manganese and zinc, and particulate iron, manganese, and aluminum, suggest that deep DFe maxima and some mid-depth DFe maxima primarily reflect sedimentary inputs, rather than remineralization. Our data and model simulations imply that vertical resupply of DFe in the Ross Sea occurs mainly during mid-late winter, and may be particularly sensitive to changes in the timing and extent of sea ice production

Unusual magnetic-field dependence of partially frustrated triangular ordering in manganese tricyanomethanide

Manganese tricyanomethanide, Mn[C(CN)3]2, consists of two interpenetrating three-dimensional rutile-like networks. In each network, the tridentate C(CN)3- anion gives rise to superexchange interactions between the Mn2+ ions (S=5/2) that can be mapped onto the "row model" for partially frustrated triangular magnets. We present heat capacity measurements that reveal a phase transition at T_N = 1.18K, indicative of magnetic ordering. The zero-field magnetically ordered structure was solved from neutron powder diffraction data taken between 0.04 and 1.2 K. It consists of an incommensurate spiral with a temperature independent propagation vector Q=(2Q 0 0)=(+/-0.622 0 0), where different signs relate to the two different networks. This corresponds to (+/-0.311 +/-0.311 0) in a quasi-hexagonal representation. The ordered moment mu=3.3mu_B is about 2/3 of the full Mn2+ moment. From the values of T_N and Q, the exchange parameters J/k = 0.15 K and J'/J = 0.749 are estimated. The magnetic-field dependence of the intensity of the Bragg reflection, measured for external fields H||Q, indicates the presence of three different magnetic phases. We associate them with the incommensurate spiral (H < 13.5 kOe), an intermediate phase (13.5 kOe 16 kOe) proposed for related compounds. For increasing fields, Q continuously approaches the value 1/3, corresponding to the commensurate magnetic structure of the fully frustrated triangular lattice. This value is reached at H_c = 19 kOe. At this point, the field-dependence reverses and Q adopts a value of 0.327 at 26 kOe, the highest field applied in the experiment. Except for H_c, the magnetic ordering is incommensurate in all three magnetic phases of Mn[C(CN)3]2.Comment: accepted for publication in J. Phys.: Condens. Matte

Protein Pattern Formation

Protein pattern formation is essential for the spatial organization of many intracellular processes like cell division, flagellum positioning, and chemotaxis. A prominent example of intracellular patterns are the oscillatory pole-to-pole oscillations of Min proteins in \textit{E. coli} whose biological function is to ensure precise cell division. Cell polarization, a prerequisite for processes such as stem cell differentiation and cell polarity in yeast, is also mediated by a diffusion-reaction process. More generally, these functional modules of cells serve as model systems for self-organization, one of the core principles of life. Under which conditions spatio-temporal patterns emerge, and how these patterns are regulated by biochemical and geometrical factors are major aspects of current research. Here we review recent theoretical and experimental advances in the field of intracellular pattern formation, focusing on general design principles and fundamental physical mechanisms.Comment: 17 pages, 14 figures, review articl

The Nature of Starbursts : II. The Duration of Starbursts in Dwarf Galaxies

The starburst phenomenon can shape the evolution of the host galaxy and the surrounding intergalactic medium. The extent of the evolutionary impact is partly determined by the duration of the starburst, which has a direct correlation with both the amount of stellar feedback and the development of galactic winds, particularly for smaller mass dwarf systems. We measure the duration of starbursts in twenty nearby, ongoing, and "fossil" starbursts in dwarf galaxies based on the recent star formation histories derived from resolved stellar population data obtained with the Hubble Space Telescope. Contrary to the shorter times of 3-10 Myr often cited, the starburst durations we measure range from 450 - 650 Myr in fifteen of the dwarf galaxies and up to 1.3 Gyr in four galaxies; these longer durations are comparable to or longer than the dynamical timescales for each system. The same feedback from massive stars that may quench the flickering SF does not disrupt the overall burst event in our sample of galaxies. While five galaxies present fossil bursts, fifteen galaxies show ongoing bursts and thus the final durations may be longer than we report here for these systems. One galaxy shows a burst that has been ongoing for only 20 Myr; we are likely seeing the beginning of a burst event in this system. Using the duration of the starbursts, we calculate that the bursts deposited 10^(53.9)-10^(57.2) ergs of energy into the interstellar medium through stellar winds and supernovae and produced 3%-26% of the host galaxy's mass.Comment: 28 pages, 4 figure