Agent Based Test and Repair of Distributed Systems

This article demonstrates how to use intelligent agents for testing and repairing a distributed system, whose elements may or may not have embedded BIST (Built-In Self-Test) and BISR (Built-In Self-Repair) facilities. Agents are software modules that perform monitoring, diagnosis and repair of the faults. They form together a society whose members communicate, set goals and solve tasks. An experimental solution is presented, and future developments of the proposed approach are explore

A study of separability criteria for mixed three-qubit states

We study the noisy GHZ-W mixture. We demonstrate some necessary but not sufficient criteria for different classes of separability of these states. It turns out that the partial transposition criterion of Peres and the criteria of G\"uhne and Seevinck dealing with matrix elements are the strongest ones for different separability classes of this 2 parameter state. As a new result we determine a set of entangled states of positive partial transpose.Comment: 18 pages, 10 figures, PRA styl

Best bang for your buck: GPU nodes for GROMACS biomolecular simulations

The molecular dynamics simulation package GROMACS runs efficiently on a wide variety of hardware from commodity workstations to high performance computing clusters. Hardware features are well exploited with a combination of SIMD, multi-threading, and MPI-based SPMD/MPMD parallelism, while GPUs can be used as accelerators to compute interactions offloaded from the CPU. Here we evaluate which hardware produces trajectories with GROMACS 4.6 or 5.0 in the most economical way. We have assembled and benchmarked compute nodes with various CPU/GPU combinations to identify optimal compositions in terms of raw trajectory production rate, performance-to-price ratio, energy efficiency, and several other criteria. Though hardware prices are naturally subject to trends and fluctuations, general tendencies are clearly visible. Adding any type of GPU significantly boosts a node's simulation performance. For inexpensive consumer-class GPUs this improvement equally reflects in the performance-to-price ratio. Although memory issues in consumer-class GPUs could pass unnoticed since these cards do not support ECC memory, unreliable GPUs can be sorted out with memory checking tools. Apart from the obvious determinants for cost-efficiency like hardware expenses and raw performance, the energy consumption of a node is a major cost factor. Over the typical hardware lifetime until replacement of a few years, the costs for electrical power and cooling can become larger than the costs of the hardware itself. Taking that into account, nodes with a well-balanced ratio of CPU and consumer-class GPU resources produce the maximum amount of GROMACS trajectory over their lifetime

More Bang for Your Buck: Improved use of GPU Nodes for GROMACS 2018

We identify hardware that is optimal to produce molecular dynamics trajectories on Linux compute clusters with the GROMACS 2018 simulation package. Therefore, we benchmark the GROMACS performance on a diverse set of compute nodes and relate it to the costs of the nodes, which may include their lifetime costs for energy and cooling. In agreement with our earlier investigation using GROMACS 4.6 on hardware of 2014, the performance to price ratio of consumer GPU nodes is considerably higher than that of CPU nodes. However, with GROMACS 2018, the optimal CPU to GPU processing power balance has shifted even more towards the GPU. Hence, nodes optimized for GROMACS 2018 and later versions enable a significantly higher performance to price ratio than nodes optimized for older GROMACS versions. Moreover, the shift towards GPU processing allows to cheaply upgrade old nodes with recent GPUs, yielding essentially the same performance as comparable brand-new hardware.Comment: 41 pages, 13 figures, 4 tables. This updated version includes the following improvements: - most notably, added benchmarks for two coarse grain MARTINI systems VES and BIG, resulting in a new Figure 13 - fixed typos - made text clearer in some places - added two more benchmarks for MEM and RIB systems (E3-1240v6 + RTX 2080 / 2080Ti

All degree six local unitary invariants of k qudits

We give explicit index-free formulae for all the degree six (and also degree four and two) algebraically independent local unitary invariant polynomials for finite dimensional k-partite pure and mixed quantum states. We carry out this by the use of graph-technical methods, which provides illustrations for this abstract topic.Comment: 18 pages, 6 figures, extended version. Comments are welcom

Agent Based Test and Repair of Distributed Systems

This article demonstrates how to use intelligent agents for testing and repairing a distributed system, whose elements may or may not have embedded BIST (Built-In Self-Test) and BISR (Built-In Self-Repair) facilities. Agents are software modules that perform monitoring, diagnosis and repair of the faults. They form together a society whose members communicate, set goals and solve tasks. An experimental solution is presented, and future developments of the proposed approach are explored

Parameterizing the modified water cloud model to improve soil moisture data retrieval using vegetation models

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Multi-Agent Reinforcement Learning for Railway Rescheduling

Malfunctions, congestions, and accidents occur in every railway system from time to time, which influences the railway traffic on a given section of the system. The disturbance may cause inconvenience for several passengers and disruption in rail freight. Both the schedule and route of the affected trains must be modified to avoid further congestion and minimalize delays. The rigidity of the railway system (e.g., single tracks, vast distances without a service station, no viable alternative in case of malfunction) poses restrictions, unlike other transportation systems. Replanning schedules and train routes (called the railway rescheduling problem) is complex and demanding, even for human operators, as one must consider numerous factors. Thus, finding a satisfying solution poses a significant challenge. This paper presents a MARL-base (Multi-Agent Reinforcement Learning) solution that shows great potential for tackling this problem, even in the case of multiple connected stations

“Platelet-associated regulatory system (PARS)” with particular reference to female reproduction

BACKGROUND: Blood platelets play an essential role in hemostasis, thrombosis and coagulation of blood. Beyond these classic functions their involvement in inflammatory, neoplastic and immune processes was also investigated. It is well known, that platelets have an armament of soluble molecules, factors, mediators, chemokines, cytokines and neurotransmitters in their granules, and have multiple adhesion molecules and receptors on their surface. METHODS: Selected relevant literature and own views and experiences as clinical observations have been used. RESULTS: Considering that platelets are indispensable in numerous homeostatic endocrine functions, it is reasonable to suppose that a platelet-associated regulatory system (PARS) may exist; internal or external triggers and/or stimuli may complement and connect regulatory pathways aimed towards target tissues and/or cells. The signal (PAF, or other tissue/cell specific factors) comes from the stimulated (by the e.g., hypophyseal hormones, bacteria, external factors, etc.) organs or cells, and activates platelets. Platelet activation means their aggregation, sludge formation, furthermore the release of the for-mentioned biologically very powerful factors, which can locally amplify and deepen the tissue specific cell reactions. If this process is impaired or inhibited for any reason, the specifically stimulated organ shows hypofunction. When PARS is upregulated, organ hyperfunction may occur that culminate in severe diseases. CONCLUSION: Based on clinical and experimental evidences we propose that platelets modulate the function of hypothalamo-hypophyseal-ovarian system. Specifically, hypothalamic GnRH releases FSH from the anterior pituitary, which induces and stimulates follicular and oocyte maturation and steroid hormone secretion in the ovary. At the same time follicular cells enhance PAF production. Through these pathways activated platelets are accumulated in the follicular vessels surrounding the follicle and due to its released soluble molecules (factors, mediators, chemokines, cytokines, neurotransmitters) locally increase oocyte maturation and hormone secretion. Therefore we suggest that platelets are not only a small participant but may be the conductor or active mediator of this complex regulatory system which has several unrevealed mechanisms. In other words platelets are corpuscular messengers, or are more than a member of the family providing hemostasis

The Disappearing Act of KH 15D: Photometric Results from 1995 to 2004

We present results from the most recent (2002-2004) observing campaigns of the eclipsing system KH 15D, in addition to re-reduced data obtained at Van Vleck Observatory (VVO) between 1995 and 2000. Phasing nine years of photometric data shows substantial evolution in the width and depth of the eclipses. The most recent data indicate that the eclipses are now approximately 24 days in length, or half the orbital period. These results are interpreted and discussed in the context of the recent models for this system put forward by Winn et al. and Chiang & Murray-Clay. A periodogram of the entire data set yields a highly significant peak at 48.37 +/- 0.01 days, which is in accord with the spectroscopic period of 48.38 +/- 0.01 days determined by Johnson et al. Another significant peak, at 9.6 days, was found in the periodogram of the out-of-eclipse data at two different epochs. We interpret this as the rotation period of the visible star and argue that it may be tidally locked in pseudosynchronism with its orbital motion. If so, application of Hut's theory implies that the eccentricity of the orbit is e = 0.65 +/- 0.01. Analysis of the UVES/VLT spectra obtained by Hamilton et al. shows that the v sin(i) of the visible star in this system is 6.9 +/- 0.3 km/sec. Using this value of v sin(i) and the measured rotation period of the star, we calculate the lower limit on the radius to be R = (1.3 +/- 0.1), R_Sun, which concurs with the value obtained by Hamilton et al. from its luminosity and effective temperature. Here we assume that i = 90 degrees since it is likely that the spin and orbital angular momenta vectors are nearly aligned.Comment: 55 pages, 18 figures, 1 color figure, to appear the September issue of the Astronomical Journa