Approximate techniques for dispersive shock waves in nonlinear media

Many optical and other nonlinear media are governed by dispersive, or diffractive, wave equations, for which initial jump discontinuities are resolved into a dispersive shock wave. The dispersive shock wave smooths the initial discontinuity and is a modulated wavetrain consisting of solitary waves at its leading edge and linear waves at its trailing edge. For integrable equations the dispersive shock wave solution can be found using Whitham modulation theory. For nonlinear wave equations which are hyperbolic outside the dispersive shock region, the amplitudes of the solitary waves at the leading edge and the linear waves at the trailing edge of the dispersive shock can be determined. In this paper an approximate method is presented for calculating the amplitude of the lead solitary waves of a dispersive shock for general nonlinear wave equations, even if these equations are not hyperbolic in the dispersionless limit. The approximate method is validated using known dispersive shock solutions and then applied to calculate approximate dispersive shock solutions for equations governing nonlinear optical media, such as nematic liquid crystals, thermal glasses and colloids. These approximate solutions are compared with numerical results and excellent comparisons are obtained

Long range transport of ultra cold atoms in a far-detuned 1D optical lattice

We present a novel method to transport ultra cold atoms in a focused optical lattice over macroscopic distances of many Rayleigh ranges. With this method ultra cold atoms were transported over 5 cm in 250 ms without significant atom loss or heating. By translating the interference pattern together with the beam geometry the trap parameters are maintained over the full transport range. Thus, the presented method is well suited for tightly focused optical lattices that have sufficient trap depth only close to the focus. Tight focusing is usually required for far-detuned optical traps or traps that require high laser intensity for other reasons. The transport time is short and thus compatible with the operation of an optical lattice clock in which atoms are probed in a well designed environment spatially separated from the preparation and detection region.Comment: 14 pages, 6 figure

AtUTr1, a UDP-glucose/UDP-galactose transporter from Arabidopsis thaliana, is located in the endoplasmic reticulum and up-regulated by the unfolded protein response

Indexación: Scopus.The folding of glycoproteins in the endoplasmic reticulum (ER) depends on a quality control mechanism mediated by the calnexin/calreticulin cycle. During this process, continuous glucose trimming and UDP-glucose-dependent re-glucosylation of unfolded glycoproteins takes place. To ensure proper folding, increases in misfolded proteins lead to up-regulation of the components involved in quality control through a process known as the unfolded protein response (UPR). Reglucosylation is catalyzed by the ER lumenal located enzyme UDP-glucose glycoprotein glucosyltransferase, but as UDP-glucose is synthesized in the cytosol, a UDP-glucose transporter is required in the calnexin/calreticulin cycle. Even though such a transporter has been hypothesized, no protein playing this role in the ER yet has been identified. Here we provide evidence that AtUTr1, a UDP-galactose/glucose transporter from Arabidopsis thaliana, responds to stimuli that trigger the UPR increasing its expression around 9-fold. The accumulation of AtUTr1 transcript is accompanied by an increase in the level of the AtUTr1 protein. Moreover, subcellular localization studies indicate that AtUTr1 is localized in the ER of plant cells. We reasoned that an impairment in AtUTr1 expression should perturb the calnexin/calreticulin cycle leading to an increase in misfolded protein and triggering the UPR. Toward that end, we analyzed an AtUTr1 insertional mutant and found an up-regulation of the ER chaperones BiP and calnexin, suggesting that these plants may be constitutively activating the UPR. Thus, we propose that in A. thaliana, AtUTr1 is the UDP-glucose transporter involved in quality control in the ER.https://www.jbc.org/article/S0021-9258(19)56445-6/fulltex

Unsteady undular bores in fully nonlinear shallow-water theory

We consider unsteady undular bores for a pair of coupled equations of Boussinesq-type which contain the familiar fully nonlinear dissipationless shallow-water dynamics and the leading-order fully nonlinear dispersive terms. This system contains one horizontal space dimension and time and can be systematically derived from the full Euler equations for irrotational flows with a free surface using a standard long-wave asymptotic expansion. In this context the system was first derived by Su and Gardner. It coincides with the one-dimensional flat-bottom reduction of the Green-Naghdi system and, additionally, has recently found a number of fluid dynamics applications other than the present context of shallow-water gravity waves. We then use the Whitham modulation theory for a one-phase periodic travelling wave to obtain an asymptotic analytical description of an undular bore in the Su-Gardner system for a full range of "depth" ratios across the bore. The positions of the leading and trailing edges of the undular bore and the amplitude of the leading solitary wave of the bore are found as functions of this "depth ratio". The formation of a partial undular bore with a rapidly-varying finite-amplitude trailing wave front is predicted for ``depth ratios'' across the bore exceeding 1.43. The analytical results from the modulation theory are shown to be in excellent agreement with full numerical solutions for the development of an undular bore in the Su-Gardner system.Comment: Revised version accepted for publication in Phys. Fluids, 51 pages, 9 figure

Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean

Nitrification, the oxidation of ammonia via nitrite to nitrate, is a key process in marine nitrogen (N) cycling. Although oceanic ammonia and nitrite oxidation are balanced, ammonia-oxidizing archaea (AOA) vastly outnumber the main nitrite oxidizers, the bacterial Nitrospinae. The ecophysiological reasons for this discrepancy in abundance are unclear. Here, we compare substrate utilization and growth of Nitrospinae to AOA in the Gulf of Mexico. Based on our results, more than half of the Nitrospinae cellular N-demand is met by the organic-N compounds urea and cyanate, while AOA mainly assimilate ammonium. Nitrospinae have, under in situ conditions, around four-times higher biomass yield and five-times higher growth rates than AOA, despite their ten-fold lower abundance. Our combined results indicate that differences in mortality between Nitrospinae and AOA, rather than thermodynamics, biomass yield and cell size, determine the abundances of these main marine nitrifiers. Furthermore, there is no need to invoke yet undiscovered, abundant nitrite oxidizers to explain nitrification rates in the ocean

Galaxies in the zone of avoidance: Misclassifications using machine learning tools

Automated methods for classifying extragalactic objects in large surveys offer significant advantages compared to manual approaches in terms of efficiency and consistency. However, the existence of the Galactic disk raises additional concerns. These regions are known for high levels of interstellar extinction, star crowding, and limited data sets and studies. In this study, we explore the identification and classification of galaxies in the zone of avoidance (ZoA). In particular, we compare our results in the near-infrared (NIR) with X-ray data. We analyzed the appearance of objects in the Galactic disk classified as galaxies using a published machine-learning (ML) algorithm and make a comparison with the visually confirmed galaxies from the VVV NIRGC catalog. Our analysis, which includes the visual inspection of all sources cataloged as galaxies throughout the Galactic disk using ML techniques reveals significant differences. Only four galaxies were found in both the NIR and X-ray data sets. Several specific regions of interest within the ZoA exhibit a high probability of being galaxies in X-ray data but closely resemble extended Galactic objects. Our results indicate the difficulty in using ML methods for galaxy classification in the ZoA, which is mainly due to the scarcity of information on galaxies behind the Galactic plane in the training set. They also highlight the importance of considering specific factors that are present to improve the reliability and accuracy of future studies in this challenging region.Comment: 10 pages, 11 figures, 2 tables. Accepted for publication in Astronomy & Astrophysic

The origin of intergalactic thermonuclear supernovae

The population synthesis method is used to study the possibility of explaining the appreciable fraction (20^+12_15%) of the intergalactic (no-host) type Ia supernovae observed in galaxy clusters (Gal-Yam ete al. 2003) by binary whote dwarf merginngs in the cores of globular clusters. In a typical globular cluster, the number of merging double white dwarfs is fount to be smaller than 10^{-13} per year per average cluster star during the entire evolution of the cluster, which is a factor of 3 higher than in a Milky-Way-type galaxy. From 5 to 30% of the merging white dwarfs are dynamically expelled from the cluster with barycenter velocities up to 150 km/s. SN Ia explosions during the mergers of binary white dwarfs in dense star clusters may account for \sim 1% of the total rate of SN Ia in the central parts of galaxy clusters if the baryon mass fraction in such star clusters is \sim 0.3%.Comment: 8 pages, 3 figs. Astronomy Letters (in press

Combinatorial microfluidic droplet engineering for biomimetic material synthesis

Although droplet-based systems are used in a wide range of technologies, opportunities for systematically customizing their interface chemistries remain relatively unexplored. This article describes a new microfluidic strategy for rapidly tailoring emulsion droplet compositions and properties. The approach utilizes a simple platform for screening arrays of droplet-based microfluidic devices and couples this with combinatorial selection of the droplet compositions. Through the application of genetic algorithms over multiple screening rounds, droplets with target properties can be rapidly generated. The potential of this method is demonstrated by creating droplets with enhanced stability, where this is achieved by selecting carrier fluid chemistries that promote titanium dioxide formation at the droplet interfaces. The interface is a mixture of amorphous and crystalline phases, and the resulting composite droplets are biocompatible, supporting in vitro protein expression in their interiors. This general strategy will find widespread application in advancing emulsion properties for use in chemistry, biology, materials and medicine

A qualitative study of the experiences and expectations of women receiving in-patient postnatal care in one English maternity unit

Background Studies consistently highlight in-patient postnatal care as the area of maternity care women are least satisfied with. As part of a quality improvement study to promote a continuum of care from the birthing room to discharge home from hospital, we explored women’s expectations and experiences of current inpatient care. Methods For this part of the study, qualitative data from semi-structured interviews were transcribed and analysed using content analyses to identify issues and concepts. Women were recruited from two postnatal wards in one large maternity unit in the South of England, with around 6,000 births a year. Results Twenty women, who had a vaginal or caesarean birth, were interviewed on the postnatal ward. Identified themes included; the impact of the ward environment; the impact of the attitude of staff; quality and level of support for breastfeeding; unmet information needs; and women’s low expectations of hospital based postnatal care. Findings informed revision to the content and planning of in-patient postnatal care, results of which will be reported elsewhere. Conclusions Women’s responses highlighted several areas where changes could be implemented. Staff should be aware that how they inter-act with women could make a difference to care as a positive or negative experience. The lack of support and inconsistent advice on breastfeeding highlights that units need to consider how individual staff communicate information to women. Units need to address how and when information on practical aspects of infant care is provided if women and their partners are to feel confident on the woman’s transfer home from hospital