Caractères biogéochimiques de la matière organique dans la colonne d'eau et les sédiments d'un écosystème saumâtre: l'étang de Thau - Variations saisonnières

Le long de la côte méditerranéenne française du Golfe du Lion, l'étang de Thau présente des caractères assez particuliers. Il est parfois soumis à des conditions anoxiques appelées "malaigues" qui résultent de l'accumulation de matières organiques durant la période chaude liée au développement des macrophytes. Ces dépôts organiques associés aux biomasses résultant des activités conchylicoles et aux apports extérieurs contribuent en cours d'année aux échanges biogéochimiques entre la colonne d'eau et les dépôts.Dans ce même milieu, l'analyse de la distribution et de la nature de la matière organique par des méthodes fines comme la chromatographie liquide haute performance ou la pyrolyse a permis de préciser son origine et son évolution dans la colonne d'eau et les dépôts. Durant les quatre saisons, les particularités de la matière organique ont donc été analysées en terme d'accumulation, de dégradation et de conservation. L'été constitue une période de production et de dégradation. L'automne est principalement caractérisé par des processus dégradatifs et des apports terrigènes (composés phénoliques). L'hiver correspond à une période de relative stabilité de la matière organique consécutive aux conditions froides. Le printemps enfin représente une période de reprise de l'activité biologique produisant une matière organique fraîche riche en sucres.Sous les tables conchylicoles on observe un accroissement de la matière organique dans la colonne d'eau et les dépôts. Mais les processus actifs de dégradation réduisent considérablement la quantité de matière organique déposée. Les résultats de ces mécanismes varient selon les stations sous table et hors table.Dans les dépôts les résultats de la dégradation dans la colonne d'eau amènent à une décroissance des composés biodégradables et à un accroissemenet des composés résistants comme les phénols et les hydrocarbures aromatiques. Ces processus de minéralisation s'accroissent vers la profondeur dans les dépôts au profit du pôle aromatique.Les relations entre les nutriments et la matière organique qui constitue à la fois leur source et leur puits se marquent bien sous les tables conchylicoles où les sels nutritifs s'accumulent en surface.The Thau lagoon along the French Mediterranean coast of the Gulf of Lions has unusual characteristics. It is sometimes subjected to anoxic conditions, known as "malaigues", which result from the accumulation of organic matter during the warmer period. Throughout the year this organic deposition, associated oyster farming and terrigenous inputs, contributes to biogeochemical exchanges between the water column and the underlying deposits. In this same environment, high-resolution analytical techniques (HPLC ; PY-GC-MS) were used to analyze the distribution and nature of the organic matter and to determine its origin and behaviour in the water column and sediments.Total suspended matter (TSM) was determined by filtration of water samples pumped up from different levels of the water column and filtered onto glass fiber filters (GF/F grade) previously heated at 450 °C for 4 hours. Particulate organic carbon (POC) was determined on the same samples with a Leco CS 125 analyzer after removal of inorganic carbonates by treatment with a H2 SO4 (2N) solution. Dissolved organic carbon (DOC) was determined on the filtrates using a Shimadzu TOC 5000 analyzer. The determination of polysaccharides in the TSM was achieved by a colorimetric method involving a H2 SO4 (3N) solution and anthrone reagent (Gallali 1972).Phenolic compounds were determined by high performance liquid chromatography (HPLC) after cupric oxide alkaline oxidation of TSM samples. The oxidized samples were acidified (HCl, 2N) and subjected to liquid-liquid extraction with ethyl acetate (Hartley & Buchan 1973; Hedges & Ertel 1982). The limit of detection is 10-4 g and the precision of the method is about 2% for each compound. Separation and quantification of phenolic monomers was carried out by HPLC (Hartley & Buchan, 1973 ; Serve et al., 1983). Of a total of 28 identified products, eleven represent the monomers constituting lignin and are taken into account according to Hedges & Parker (1976), Hedges & Mann (1979) and Hedges & Ertel (1982). The products of oxidative hydrolysis of lignin belong to the following three series : 4-hydroxybenzyl "H" (p-hydroxybenzoic acid, p-hydroxybenzaldehyde, p-hydroxyacetophenone), 3-methoxy-4-hydroxybenzylic "V" (Vanillyl) and 3,5-methoxy-4-hydroxybenzylic "S" (Syringyl). Each of these three series presents an alkyl side chain with 1, 2 or 3 carbon atoms. The compounds in C6-C1 can be acids or aldehydes, those in C6-C2 are ketones and those in C6-C3 are acids. The latter, having a phenylpropenic structure, belong to the Cinnamyl "C" series (ferulic acid, p-coumaric acid). Separation of phenols was carried out on a Merck analytical column (250 mm long x 4 mm in diameter) with a Lichrosorb reversed phase C18 stationary phase of 5 µm granulometry, equipped with a precolumn (40 mm long) containing the same phase. Elution was achieved with ternary eluents (water, acetonitrile, acetic acid), in a high pressure binary gradient (Charrière 1991). The eluted products were determined qualitatively, by comparison of their retention times with those of commercial products (detection in UV at 275 nm), after a co-injection if necessary, and quantitatively by an internal standard method (phloroglucinol : 1,3,5-benzenetriol and p-anisic acid : p-methoxybenzoic acid).Analysis of the major classes of organic compounds was carried out by coupled pyrolysis - gas chromatography - mass spectrometry. A CDS 1000 pyrolysis probe was directly fitted with a Perkin-Elmer 8700 gas chromatograph (GC) equipped with a TR-WAX capillary column (length: 30 m, diameter: 0.32 mm, phase thickness: 0.50 µm). Pyrolysis temperature was 700 °C for 10 s and the column temperature was programmed from 60°C to 240 °C at a rate of 6 °C/min according to Puigbo et al. (1989). Pyrolysis fragments were identified by coupling the GC to a HP 5989 mass spectrometer. Twenty three major peaks were selected on the pyrochromatograms and each selected compound was expressed as a percentage of the sum of the surface of these 23 peaks Pyrolysis products were grouped into five main families, each of them including similar molecules or closely related chemical structures: aromatic hydrocarbons, nitrogenous compounds, sugars, phenols and amino sugars.The survey of all these parameters showed some characteristic differences over the four seasons. Summer appears as a period when the biological production reaches maximum levels in the water column. At that time, organic matter is stratified with high levels of accumulation in the deeper layers. DOC is also abundant throughout the water column and organic compounds belonging to the class of sugars decrease according to depth. Autumn corresponds to Mediterranean storms and typical rainfalls. Terrestrial inputs increase in this season and degradative processes affect the organic matter that was produced in large quantities in the summer by the autotrophic organisms of the lagoon. DOC is recycled and reflects the degradation of autochthonous organic material. Winter, with reduced TSM levels related to low terrestrial inputs, is characterized by a homogenization of the water column and a weak biological activity. Lignin-derived phenols are abundant and correspond to a period of low biological activity. In contrast, in the spring the biological activity recovers, as indicated by the high sugar content of the DOC and by a homogenization of the water column.Under the oyster beds, an increase of organic matter is observed in the water column as well as in the sediments. However, the active degradation processes in summer and autumn reduce considerably the amount of the settling organic matter. The results of these processes are variable according to whether the stations are under or outside of the oyster beds. Degradation in the water column leads to a decrease of biodegradable compounds in the sediments and an increase in resistant compounds like phenols and aromatic hydrocarbons. These mineralization processes increase with depth in deposits, as reflected by higher proportions of aromatic compounds. The relationship between nutrients and organic matter, the latter constituting both their source and their sink, appears in sediments under oyster beds, where the inorganic nutrients accumulate at the surface

dictyBase—a Dictyostelium bioinformatics resource update

dictyBase (http://dictybase.org) is the model organism database for Dictyostelium discoideum. It houses the complete genome sequence, ESTs and the entire body of literature relevant to Dictyostelium. This information is curated to provide accurate gene models and functional annotations, with the goal of fully annotating the genome. This dictyBase update describes the annotations and features implemented since 2006, including improved strain and phenotype representation, integration of predicted transcriptional regulatory elements, protein domain information, biochemical pathways, improved searching and a wiki tool that allows members of the research community to provide annotations

Computational Models for Prediction of Yeast Strain Potential for Winemaking from Phenotypic Profiles

Saccharomyces cerevisiae strains from diverse natural habitats harbour a vast amount of phenotypic diversity, driven by interactions between yeast and the respective environment. In grape juice fermentations, strains are exposed to a wide array of biotic and abiotic stressors, which may lead to strain selection and generate naturally arising strain diversity. Certain phenotypes are of particular interest for the winemaking industry and could be identified by screening of large number of different strains. The objective of the present work was to use data mining approaches to identify those phenotypic tests that are most useful to predict a strain's potential for winemaking. We have constituted a S. cerevisiae collection comprising 172 strains of worldwide geographical origins or technological applications. Their phenotype was screened by considering 30 physiological traits that are important from an oenological point of view. Growth in the presence of potassium bisulphite, growth at 40 degrees C, and resistance to ethanol were mostly contributing to strain variability, as shown by the principal component analysis. In the hierarchical clustering of phenotypic profiles the strains isolated from the same wines and vineyards were scattered throughout all clusters, whereas commercial winemaking strains tended to co-cluster. Mann-Whitney test revealed significant associations between phenotypic results and strain's technological application or origin. Naive Bayesian classifier identified 3 of the 30 phenotypic tests of growth in iprodion (0.05 mg/mL), cycloheximide (0.1 mu g/mL) and potassium bisulphite (150 mg/mL) that provided most information for the assignment of a strain to the group of commercial strains. The probability of a strain to be assigned to this group was 27% using the entire phenotypic profile and increased to 95%, when only results from the three tests were considered. Results show the usefulness of computational approaches to simplify strain selection procedures.Ines Mendes and Ricardo Franco-Duarte are recipients of a fellowship from the Portuguese Science Foundation, FCT (SFRH/BD/74798/2010, SFRH/BD/48591/2008, respectively) and Joao Drumonde-Neves is recipient of a fellowship from the Azores government (M3.1.2/F/006/2008 (DRCT)). Financial support was obtained from FEDER funds through the program COMPETE and by national funds through FCT by the projects FCOMP-01-0124-008775 (PTDC/AGR-ALI/103392/2008) and PTDC/AGR-ALI/121062/2010. Lan Umek and Blaz Zupan acknowledge financial support from Slovene Research Agency (P2-0209). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.info:eu-repo/semantics/publishedVersio

Solid-state reference electrodes based on carbon nanotubes and polyacrylate membranes

A novel potentiometric solid-state reference electrode containing single-walled carbon nanotubes as the transducer layer between a polyacrylate membrane and the conductor is reported here. Single-walled carbon nanotubes act as an efficient transducer of the constant potentiometric signal originating from the reference membrane containing the Ag/AgCl/Cl− ions system, and they are needed to obtain a stable reference potentiometric signal. Furthermore, we have taken advantage of the light insensitivity of single-walled carbon nanotubes to improve the analytical performance characteristics of previously reported solid-state reference electrodes. Four different polyacrylate polymers have been selected in order to identify the most efficient reservoir for the Ag/AgCl system. Finally, two different arrangements have been assessed: (1) a solid-state reference electrode using photo-polymerised n-butyl acrylate polymer and (2) a thermo-polymerised methyl methacrylate:n-butyl acrylate (1:10) polymer. The sensitivity to various salts, pH and light, as well as time of response and stability, has been tested: the best results were obtained using single-walled carbon nanotubes and photo-polymerised n-butyl acrylate polymer. Water transport plays an important role in the potentiometric performance of acrylate membranes, so a new screening test method has been developed to qualitatively assess the difference in water percolation between the polyacrylic membranes studied. The results presented here open the way for the true miniaturisation of potentiometric systems using the excellent properties of single-walled carbon nanotubes

Naturaleza y cultura en Ámerica Latina

La concreción del XVIII Foro de Estudiantes Latinoamericanos de Antrología y Arqueología: Cultura y naturaleza en América Latina: escenarios para un modelo de desarrollo no civilizatorio, efectuado en Quito desde el 17 al 23 de julio del 2011, se constituyó en un acontecimiento sumamente significativo para la antropología latinoamericana debido a dos motivos. Primero porque coincidió con la emergencia del movimiento universitario estudiantil latinoamericano que expresaba sus tendencias, propuestas y exigencias de cambios tanto de las prácticas académicas como de los patrones civilizatorios que rigen las relaciones actuales. Segundo, porque se inscribía en un contexto de consolidación de las nuevas democracias de los países andinos, de carácter antineoliberal y basadas en los sujetos de derecho entre los cuales se incluye la naturaleza. Estos contextos determinaron que el Foro no ponga en escena certidumbres teóricas o metodológicas, ni se preste al exhibicionismo estéril de los avances disciplinares. Más bien, la convocatoria de la antropología y la arqueología fue apenas un pretexto para hablar, con su lenguaje, de nosotros mismos, de lo que somos, de lo que pensamos, de lo que aspiramos y sentimos sobre nuestra Latinoamérica. Lo que hemos visto, oído y compartido, en realidad, no han sido solamente ideas o conceptos sino opciones y toma de posiciones respecto a múltiples encrucijadas. Posición ante situaciones que amenazan la vida, la justicia y los derechos de todos, un desafío epistemológico todavía en ciernes y que no termina de cuajar aún en nuestras prácticas académicas