Exact eigenvalue spectrum of a class of fractal scale-free networks

The eigenvalue spectrum of the transition matrix of a network encodes important information about its structural and dynamical properties. We study the transition matrix of a family of fractal scale-free networks and analytically determine all the eigenvalues and their degeneracies. We then use these eigenvalues to evaluate the closed-form solution to the eigentime for random walks on the networks under consideration. Through the connection between the spectrum of transition matrix and the number of spanning trees, we corroborate the obtained eigenvalues and their multiplicities.Comment: Definitive version accepted for publication in EPL (Europhysics Letters

Mixed methods to explore factors associated with the decline of patients in the methadone maintenance treatment program in Shanghai, China

BACKGROUND: This study was to characterize the Methadone Maintenance Treatment (MMT) in Shanghai, China, and to explore factors associated with the decline of patients in MMT during 2005-2016. METHODS: Both qualitative and quantitative methods were used in this study. Based on the data from Shanghai Centers for Disease Control (CDC), we described the changes in the number of patients who received MMT, and new enrollment each year from 2005 to 2016. Focus groups were conducted with 22 patients, and in-depth interviews were conducted with 9 service providers. RESULTS: Quantitative data demonstrate that the number of new enrollment began to decline in 2009, and the number of patients receiving MMT began to decline in 2012. The main reasons for dropout include (1) discontinuing medication due to unknown reasons (25%), (2) criminal activities other than drug-related crimes (20%), (3) relapse to heroin use (16%), and (4) physical disease (10%). Qualitative assessment results indicate that the major reasons for the decline of patients in MMT are as follows: (1) the increase of Amphetamine-type stimulants (ATS) use in recent years, (2) limited knowledge about MMT in both patients and MMT staff, (3) complicated enrollment criteria, and (4) discrimination against drug use. CONCLUSION: Various reasons to explain the decline of patients in MMT in Shanghai, China, were identified. Government agencies, service providers, and other stakeholders need to work together and overcome identified barriers to support MMT programs in China

Signs of environmental effects on star-forming galaxies in the Spiderweb protocluster at z=2.16

We use multi-object near-infrared (NIR) spectroscopy with VLT/KMOS to investigate the role of the environment in the evolution of the ionized gas properties of narrow-band selected H$\alpha$ emitters (HAEs) in the Spiderweb protocluster at $z=2.16$. Based on rest-frame optical emission lines, H$\alpha$ and [NII]$\lambda$6584, we confirm the cluster membership of 39 of our targets (i.e. 93% success rate), and measure their star-formation rates (SFR), gas-phase oxygen abundances and effective radius. We parametrize the environment where our targets reside by using local and global density indicators based on previous samples of spectroscopic and narrow-band cluster members. We find that star-forming galaxies embedded in the Spiderweb protocluster display SFRs compatible with those of the main sequence and morphologies comparable to those of late-type galaxies at $z=2.2$ in the field. We also report a mild gas-phase metallicity enhancement ($0.6\pm0.3$ dex) at intermediate stellar masses. Furthermore, we identify two UVJ-selected quiescent galaxies with residual H$\alpha$-based star formation and find signs of extreme dust obscuration in a small sample of SMGs based on their FIR and H$\alpha$ emission. Interestingly, the spatial distribution of these objects differs from the rest of HAEs, avoiding the protocluster core. Finally, we explore the gas fraction-gas metallicity diagram for 7 galaxies with molecular gas masses measured by ATCA using CO(1-0). In the context of the gas-regulator model, our objects are consistent with relatively low mass-loading factors, suggesting lower outflow activity than field samples at the cosmic noon and thus, hinting at the onset of environmental effects in this massive protocluster.Comment: 29 pages, 15 figures. Accepted for publication in MNRA

Optical and Near-Infrared Color Profiles in Nearby Early-Type Galaxies and The Implied Age and Metallicity Gradients

We present results of age and metallicity gradient analysis inferred from both optical and near-infrared surface photometry. The analysis is based on a sample of 36 nearby early-type galaxies, obtained from the Early Data Release of the Sloan Digital Sky Survey and the Two Micron All Sky Survey. Surface brightness profiles were derived in each band, and used to study the color gradients of the galaxies. Using simple stellar population models with both optical and near infrared colors, we may interpret the color gradients in term of age and metallicity gradients of galaxies. Using $g_Z \equiv d \log Z_{\rm met} / d \log R$ and $g_A = d \log {\rm Age} / d \log R$ to represent the metallicity and age gradients, we found a median value of $g_Z=-0.25\pm 0.03$ for the metallicity gradient, with a dispersion $\sigma_{g_Z}=0.19\pm0.02$. The corresponding values for the age gradient were $g_A=0.02\pm 0.04$ and $\sigma_{g_A}=0.25\pm0.03$. These results are in good agreement with recent observational results, as well as with recent simulations that suggest both monolithic collapse and major merger have played important roles in the formation of early-type galaxies. Our results demonstrate the potential of using multi-waveband colors obtained from current and future optical and infrared surveys in constraining the age and metallicity gradients of early-type galaxies.Comment: 40 pages, 14 figures. Revised version. Accepted by Ap

Segmentation of the C57BL/6J mouse cerebellum in magnetic resonance images

The C57BL mouse is the centerpiece of efforts to use gene-targeting technology to understand cerebellar pathology, thus creating a need for a detailed magnetic resonance imaging (MRI) atlas of the cerebellum of this strain. In this study we present a methodology for systematic delineation of the vermal and hemispheric lobules of the C57BL/6J mouse cerebellum in magnetic resonance images. We have successfully delineated 38 cerebellar and cerebellar-related structures. The higher signal-to-noise ratio achieved by group averaging facilitated the identification of anatomical structures. In addition, we have calculated average region volumes and created probabilistic maps for each structure. The segmentation method and the probabilistic maps we have created will provide a foundation for future studies of cerebellar disorders using transgenic mouse models

Analysis of microstructure effects on edge crack of thin strip during cold rolling

Edge cracks in cold rolling of the thin strip affect the strip quality and productivity significantly. In this study, an experimental and mechanical investigation on microstructures has been carried out to study the edge crack formation during cold rolling of the thin strip. The effects of the feed material microstructures on the edge crack evolution were studied employing optical microscopy and scanning electron microscopy (SEM). Experimental observation indicates that fine grain occurs in hot-rolled microstructure and coarse grain is produced in ferritic rolled microstructure. Different grain sizes affect significantly the formation mechanics of the microcrack, crack initiation, and orientation of crack extension. The grain size and grain boundaries effects on crack retardation are discussed also during edge crack initiation. During the crack growth in coarse grain, most edge crack tips will blunt, which improves the crack toughness by causing less stress concentration. Overall, the fine microstructure shows a good crack initiation resistance, whereas the coarse microstructure has a better resistance to crack propagation. This research provides additional understanding of the mechanism of microstructure influence on edge crack evolution of cold strip rolling, which could be helpful for developing defect-free thin strip

Visualization of mouse barrel cortex using ex-vivo track density imaging

We describe the visualization of the barrel cortex of the primary somatosensory area (S1) of ex vivo adult mouse brain with short-tracks track density imaging (stTDI). stTDI produced much higher definition of barrel structures than conventional fractional anisotropy (FA), directionally-encoded color FA maps, spin-echo and T2-weighted imaging and gradient echo Ti/T2*-weighted imaging. 3D high angular resolution diffusion imaging (HARDI) data were acquired at 48 micron isotropic resolution for a (3 mm)3 block of cortex containing the barrel field and reconstructed using stTDI at 10 micron isotropic resolution. HARDI data were also acquired at 100 micron isotropic resolution to image the whole brain and reconstructed using stTDI at 20 micron isotropic resolution. The 10 micron resolution stTDI maps showed exceptionally clear delineation of barrel structures. Individual barrels could also be distinguished in the 20 micron stTDI maps but the septa separating the individual barrels appeared thicker compared to the 10 micron maps, indicating that the ability of stTDI to produce high quality structural delineation is dependent upon acquisition resolution. Close homology was observed between the barrel structure delineated using stTDI and reconstructed histological data from the same samples. stTDI also detects barrel deletions in the posterior medial barrel sub-field in mice with infraorbital nerve cuts. The results demonstrate that stTDI is a novel imaging technique that enables three-dimensional characterization of complex structures such as the barrels in S1 and provides an important complementary non-invasive imaging tool for studying synaptic connectivity, development and plasticity of the sensory system. (C) 2013 Elsevier Inc. All rights reserved

Mendelian randomization analysis of C-reactive protein on colorectal cancer risk

Background: Chronic inflammation is a risk factor for colorectal cancer (CRC). Circulating C-reactive protein (CRP) is also moderately associated with CRC risk. However, observational studies are susceptible to unmeasured confounding or reverse causality. Using genetic risk variants as instrumental variables, we investigated the causal relationship between genetically elevated CRP concentration and CRC risk, using a Mendelian randomization approach. Methods: Individual-level data from 30 480 CRC cases and 22 844 controls from 33 participating studies in three international consortia were used: the Genetics and Epidemiology of Colorectal Cancer Consortium (GECCO), the Colorectal Transdisciplinary Study (CORECT) and the Colon Cancer Family Registry (CCFR). As instrumental variables, we included 19 single nucleotide polymorphisms (SNPs) previously associated with CRP concentration. The SNP-CRC associations were estimated using a logistic regression model adjusted for age, sex, principal components and genotyping phases. An inverse-variance weighted method was applied to estimate the causal effect of CRP on CRC risk. Results: Among the 19 CRP-associated SNPs, rs1260326 and rs6734238 were significantly associated with CRC risk (P = 7.5 × 10-4, and P = 0.003, respectively). A genetically predicted one-unit increase in the log-transformed CRP concentrations (mg/l) was not associated with increased risk of CRC [odds ratio (OR) = 1.04; 95% confidence interval (CI): 0.97, 1.12; P = 0.256). No evidence of association was observed in subgroup analyses stratified by other risk factors. Conclusions: In spite of adequate statistical power to detect moderate association, we found genetically elevated CRP concentration was not associated with increased risk of CRC among individuals of European ancestry. Our findings suggested that circulating CRP is unlikely to be a causal factor in CRC development

The natural history and genotype–phenotype correlations of TMPRSS3 hearing loss:an international, multi-center, cohort analysis

TMPRSS3-related hearing loss presents challenges in correlating genotypic variants with clinical phenotypes due to the small sample sizes of previous studies. We conducted a cross-sectional genomics study coupled with retrospective clinical phenotype analysis on 127 individuals. These individuals were from 16 academic medical centers across 6 countries. Key findings revealed 47 unique TMPRSS3 variants with significant differences in hearing thresholds between those with missense variants versus those with loss-of-function genotypes. The hearing loss progression rate for the DFNB8 subtype was 0.3 dB/year. Post-cochlear implantation, an average word recognition score of 76% was observed. Of the 51 individuals with two missense variants, 10 had DFNB10 with profound hearing loss. These 10 all had at least one of 4 TMPRSS3 variants predicted by computational modeling to be damaging to TMPRSS3 structure and function. To our knowledge, this is the largest study of TMPRSS3 genotype–phenotype correlations. We find significant differences in hearing thresholds, hearing loss progression, and age of presentation, by TMPRSS3 genotype and protein domain affected. Most individuals with TMPRSS3 variants perform well on speech recognition tests after cochlear implant, however increased age at implant is associated with worse outcomes. These findings provide insight for genetic counseling and the on-going design of novel therapeutic approaches.</p