Determination of amyloid core structure using chemical shifts.

Amyloid fibrils are the pathological hallmark of a large variety of neurodegenerative disorders. The structural characterization of amyloid fibrils, however, is challenging due to their non-crystalline, heterogeneous, and often dynamic nature. Thus, the structure of amyloid fibrils of many proteins is still unknown. We here show that the structure calculation program CS-Rosetta can be used to obtain insight into the core structure of amyloid fibrils. Driven by experimental solid-state NMR chemical shifts and taking into account the polymeric nature of fibrils CS-Rosetta allows modeling of the core of amyloid fibrils. Application to the Y145X stop mutant of the human prion protein reveals a left-handed beta-helix

A Review of Dynamic Datasets for Facial Expression Research

Temporal dynamics have been increasingly recognized as an important component of facial expressions. With the need for appropriate stimuli in research and application, a range of databases of dynamic facial stimuli has been developed. The present article reviews the existing corpora and describes the key dimensions and properties of the available sets. This includes a discussion of conceptual features in terms of thematic issues in dataset construction as well as practical features which are of applied interest to stimulus usage. To identify the most influential sets, we further examine their citation rates and usage frequencies in existing studies. General limitations and implications for emotion research are noted and future directions for stimulus generation are outlined

Human and machine validation of 14 databases of dynamic facial expressions

With a shift in interest toward dynamic expressions, numerous corpora of dynamic facial stimuli have been developed over the past two decades. The present research aimed to test existing sets of dynamic facial expressions (published between 2000 and 2015) in a cross-corpus validation effort. For this, 14 dynamic databases were selected that featured facial expressions of the basic six emotions (anger, disgust, fear, happiness, sadness, surprise) in posed or spontaneous form. In Study 1, a subset of stimuli from each database (N = 162) were presented to human observers and machine analysis, yielding considerable variance in emotion recognition performance across the databases. Classification accuracy further varied with perceived intensity and naturalness of the displays, with posed expressions being judged more accurately and as intense, but less natural compared to spontaneous ones. Study 2 aimed for a full validation of the 14 databases by subjecting the entire stimulus set (N = 3812) to machine analysis. A FACS-based Action Unit (AU) analysis revealed that facial AU configurations were more prototypical in posed than spontaneous expressions. The prototypicality of an expression in turn predicted emotion classification accuracy, with higher performance observed for more prototypical facial behavior. Furthermore, technical features of each database (i.e., duration, face box size, head rotation, and motion) had a significant impact on recognition accuracy. Together, the findings suggest that existing databases vary in their ability to signal specific emotions, thereby facing a trade-off between realism and ecological validity on the one end, and expression uniformity and comparability on the other

Measures and metrics for automatic emotion classification via FACET

For dynamic emotions to be modelled in a natural and convincing way, systems must rely on accurate affective analysis of facial expressions in the first place. The present work introduces two measures for evaluating automatic emotion classification performance. It further provides a systematic comparison between 14 databases of dynamic expressions. Machine analysis was conducted using the FACET system, with an algorithm calculating recognition sensitivity and confidence. Results revealed the proportion of facial stimuli that could be recognised by the machine algorithm above threshold evidence, showing significant differences in recognition performance between the databases

An Experimental Study of Trace Element Fluxes from Subducted Oceanic Crust

We have determined experimentally the hydrous phase relations and trace element partitioning behaviour of ocean floor basalt protoliths at pressures and temperatures (3 GPa, 750-1000°C) relevant to melting in subduction zones. To avoid potential complexities associated with trace element doping of starting materials we have used natural, pristine mid-ocean ridge basalt (MORB from Kolbeinsey Ridge) and altered oceanic crust (AOC from Deep Sea Drilling Project leg 46, ∼20°N Atlantic). Approximately 15 wt % water was added to starting materials to simulate fluid fluxing from dehydrating serpentinite underlying the oceanic crust. The vapour-saturated solidus is sensitive to basalt K2O content, decreasing from 825 ± 25°C in MORB (∼0·04 wt % K2O) to ≈750°C in AOC (∼0·25 wt % K2O). Textural evidence indicates that near-solidus fluids are sub-critical in nature. The residual solid assemblage in both MORB and AOC experiments is dominated by garnet and clinopyroxene, with accessory kyanite, epidote, Fe-Ti oxide and rutile (plus quartz-coesite, phengite and apatite below the solidus). Trace element analyses of quenched silica-rich melts show a strong temperature dependence of key trace elements. In contrast to the trace element-doped starting materials of previous studies, we do not observe residual allanite. Instead, abundant residual epidote provides the host for thorium and light rare earth elements (LREE), preventing LREE from being released (ΣLREE 1500 and La/SmPUM (where PUM indicates primitive upper mantle) ∼1, most closely matching the geochemical signal of arc lavas worldwide, were generated from AOC at 800-850°

Predominance of exotic and introduced species among sturgeons captured from the Baltic and North Seas and their watersheds, 1981-1999

Sturgeon catches (n = 256) from 1981-1999 reported mainly by commercial fishermen and anglers in German, Polish, and Dutch coastal waters and tributaries were analysed. During the study period, 20 % of catches were reported from coastal waters and 65 % from rivers and estuaries of large river systems, including the Odra, Elbe, Rhine and Weser. The data indicate that, from 1981- 1993, there was a major decline in the Atlantic sturgeon Acipenser sturio L., 1758, and an increase in the total catches of non-indigenous sturgeon species. The Siberian sturgeon Acipenser baerii Brandt, 1869, the Russian sturgeon Acipenser gueldenstaedtii Brandt & Ratzeberg, 1833, and various hybrids dominated. Occasional catches of the white sturgeon Acipenser transmontanus Richardson, 1836 and the sterlet Acipenser ruthenus L., 1758 were also reported. During the study period, significant changes in species composition and distribution of catches were observed. The predominance of non-indigenous sturgeon species is a result of the increasingly intensive sturgeon aquaculture activities in Germany, Poland, and the Netherlands. The most frequently reared species now dominate the catches. In addition to these escapees from fish farms, several intentional releases of sturgeons were reported. The results show that introduced exotic sturgeon species may thrive under certain natural conditions. Therefore, they may interfere with restoration efforts for the native A. sturio, competing for habitat and introducing diseases and hybridization.Se analizaron las capturas de esturiones (n = 256) entre 1981 y 1999 proporcionadas principalmente por pescadores profesionales y deportivos en las costas alemanas, polacas y holandesas, y en los sistemas fluviales que desembocan en ellas. En el periodo de estudio, el 20 % de las capturas correspondió a aguas litorales y el 65 % a ríos y estuarios de los grandes sistemas fluviales, incluidos los ríos Oder, Elba, Rin y Weser. Los datos indican que entre 1981 y 1993 tuvo lugar el mayor declive del esturión atlántico Acipenser sturio L., 1758 y un incremento en las capturas totales de las especies alóctonas de esturiones. Predominaron las capturas de esturión siberiano Acipenser baerii Brandt, 1869, esturión ruso Acipenser gueldenstaedtii Brandt & Ratzeberg, 1833 y varios híbridos. También se registraron capturas ocasionales de esturión blanco Acipenser transmontanus Richardson, 1836 y esterlete Acipenser ruthenus L., 1758. En el periodo de estudio se observaron cambios significativos en la composición de especies y en la distribución de las capturas. El predominio de las especies alóctonas de esturiones es el resultado de las crecientes actividades en la acuicultura intensiva de esturión en Alemania, Polonia y Países Bajos. Las especies cultivadas más frecuentemente dominan ahora las capturas. Además de estas fugas de las piscifactorías, se han registrado varias sueltas intencionadas. Los resultados muestran que las especies de esturiones exóticas introducidas pueden prosperar en ciertas condiciones naturales. Por esta razón, pueden interferir en los esfuerzos de restauración de la especie autóctona A. sturio, compitiendo por el hábitat e introduciendo enfermedades e hibridación.Instituto Español de Oceanografí

Oat growth under different nitrogen doses in an eucalyptus alley cropping system in subtropical Brazil.

Foi realizada uma análise de crescimento para verificar como a aveia (Avena sativa L. cv. IPR 126) cultivada para grãos responde a um sistema agroflorestal (SAF) com eucaliptos (Eucalyptus dunnii Maiden) no subtrópico brasileiro. A hipótese deste trabalho é que a resposta de crescimento da aveia não é modificada pelo nitrogênio em distâncias relativas a faixas de eucaliptos. O objetivo deste estudo foi determinar como o crescimento da aveia é influenciado por níveis de nitrogênio (12 e 80 kg ha-1 de N) em cinco posições equidistantes entre faixas de linhas duplas de eucaliptos [20 m (4 m x 3 m)] em SAF e em agricultura tradicional de plantio direto. O experimento foi em faixas no delineamento de blocos ao acaso com quatro repetições. Foram avaliadas as taxas de crescimento relativo e de assimilação líquida, fração de massa foliar e taxa de enchimento relativo da panícula. O nitrogênio alterou a resposta do crescimento diferentemente em posições relativas às faixas de árvores, portanto diferentes doses de nitrogênio devem ser utilizadas nestas posições para aumentar o crescimento da aveia