SlicerAstro: a 3-D interactive visual analytics tool for HI data

SKA precursors are capable of detecting hundreds of galaxies in HI in a single 12 hours pointing. In deeper surveys one will probe more easily faint HI structures, typically located in the vicinity of galaxies, such as tails, filaments, and extraplanar gas. The importance of interactive visualization has proven to be fundamental for the exploration of such data as it helps users to receive immediate feedback when manipulating the data. We have developed SlicerAstro, a 3-D interactive viewer with new analysis capabilities, based on traditional 2-D input/output hardware. These capabilities enhance the data inspection, allowing faster analysis of complex sources than with traditional tools. SlicerAstro is an open-source extension of 3DSlicer, a multi-platform open source software package for visualization and medical image processing. We demonstrate the capabilities of the current stable binary release of SlicerAstro, which offers the following features: i) handling of FITS files and astronomical coordinate systems; ii) coupled 2-D/3-D visualization; iii) interactive filtering; iv) interactive 3-D masking; v) and interactive 3-D modeling. In addition, SlicerAstro has been designed with a strong, stable and modular C++ core, and its classes are also accessible via Python scripting, allowing great flexibility for user-customized visualization and analysis tasks.Comment: 18 pages, 11 figures, Accepted by Astronomy and Computing. SlicerAstro link: https://github.com/Punzo/SlicerAstro/wiki#get-slicerastr

Magnetic properties of HO2 thin films

We report on the magnetic and transport studies of hafnium oxide thin films grown by pulsed-laser deposition on sapphire substrates under different oxygen pressures, ranging from 10-7 to 10-1 mbar. Some physical properties of these thin films appear to depend on the oxygen pressure during growth: the film grown at low oxygen pressure (P ~= 10-7 mbar) has a metallic aspect and is conducting, with a positive Hall signal, while those grown under higher oxygen pressures (7 x 10-5 <= P <= 0.4 mbar) are insulating. However, no intrinsic ferromagnetic signal could be attributed to the HfO2 films, irrespective of the oxygen pressure during the deposition.Comment: 1

Family physician involvement in cancer care follow-up: the experience of a cohort of patients with lung cancer.

PURPOSE There has been little research describing the involvement of family physicians in the follow up of patients with cancer especially during the primary treatment phase We undertook a prospective longitudinal study of patients with lung cancer to assess their family physician s involvement in their follow up at the different phases of cancer METHODS In 5 hospitals in the province of Quebec Canada patients with a recent diagnosis of lung cancer were surveyed every 3 to 6 months whether they had metastasis or not, for a maximum of 18 months to assess aspects of their family physician s involvement in cancer care RESULTS Of the 395 participating patients 92% had a regular family physician but only 60% had been referred to a specialist by him/her or a colleague for the diagnosis of their lung cancer A majority of patients identified the oncology team or oncologists as mainly responsible for their cancer care throughout their cancer journey except at the advanced phase where a majority attributed this role to their family physician At baseline only 16% of patients perceived a shared care pattern between their family physician and oncologists but this pro portion increased with cancer progression Most patients would have liked their family physician to be more involved in all aspects of cancer care CONCLUSIONS Although patients perceive that the oncology team is the main party responsible for the follow up of their lung cancer they also wish their family physicians to be involved Better communication and collaboration between family physicians and the oncology team are needed to facilitate shared care in cancer follow u

X-ray photodesorption of complex organic molecules in protoplanetary disks -- I. Acetonitrile CH3CN

X-rays emitted from pre-main-sequence stars at the center of protoplanetary disks can induce nonthermal desorption from interstellar ices populating the cold regions. This X-ray photodesorption needs to be quantified for complex organic molecules (COMs), including acetonitrile CH3CN, which has been detected in several disks. We experimentally estimate the X-ray photodesorption yields of neutral species from pure CH3CN ices and from interstellar ice analogs for which CH3CN is mixed either in a CO- or H2O-dominated ice. The ices were irradiated at 15 K by soft X-rays (400-600 eV) from synchrotron light (SOLEIL synchrotron). X-ray photodesorption was probed in the gas phase via quadrupole mass spectrometry. X-ray photodesorption yields were derived from the mass signals and were extrapolated to higher X-ray energies for astrochemical models. X-ray photodesorption of the intact CH3CN is detected from pure CH3CN ices and from mixed 13CO:CH3CN ices, with a yield of about 5x10^(-4) molecules/photon at 560 eV. When mixed in H2O-dominated ices, X-ray photodesorption of the intact CH3CN at 560 eV is below its detection limit, which is 10^(-4) molecules/photon. Yields associated with the desorption of HCN, CH4 , and CH3 are also provided. The derived astrophysical yields significantly depend on the local conditions expected in protoplanetary disks. They vary from 10^(-4) to 10(-6) molecules/photon for the X-ray photodesorption of intact CH3CN from CO-dominated ices. Only upper limits varying from 5x10^(-5) to 5x10^(-7) molecules/photon could be derived for the X-ray photodesorption of intact CH3CN from H2O-dominated ices. X-ray photodesorption of intact CH3CN from interstellar ices might in part explain the abundances of CH3CN observed in protoplanetary disks. The desorption efficiency is expected to vary with the local physical conditions, hence with the disk region

Spectrally-resolved UV photodesorption of CH4 in pure and layered ices

Context. Methane is among the main components of the ice mantles of insterstellar dust grains, where it is at the start of a rich solid-phase chemical network. Quantification of the photon-induced desorption yield of these frozen molecules and understanding of the underlying processes is necessary to accurately model the observations and the chemical evolution of various regions of the interstellar medium. Aims. This study aims at experimentally determining absolute photodesorption yields for the CH4 molecule as a function of photon energy. The influence of the ice composition is also investigated. By studying the methane desorption from layered CH4:CO ice, indirect desorption processes triggered by the excitation of the CO molecules is monitored and quantified. Methods. Tunable monochromatic VUV light from the DESIRS beamline of the SOLEIL synchrotron is used in the 7 - 13.6 eV (177 - 91 nm) range to irradiate pure CH4 or layers of CH4 deposited on top of CO ice samples. The release of species in the gas phase is monitored by quadrupole mass spectrometry and absolute photodesorption yields of intact CH4 are deduced. Results. CH4 photodesorbs for photon energies higher than ~9.1 eV (~136 nm). The photodesorption spectrum follows the absorption spectrum of CH4, which confirms a desorption mechanism mediated by electronic transitions in the ice. When it is deposited on top of CO, CH4 desorbs between 8 and 9 eV with a pattern characteristic of CO absorption, indicating desorption induced by energy transfer from CO molecules. Conclusions. The photodesorption of CH4 from the pure ice in various interstellar environments is around 2.0 x 10^-3 molecules per incident photon. Results on CO-induced indirect desorption of CH4 provide useful insights for the generalization of this process to other molecules co-existing with CO in ice mantles

Oscillator Strengths and Predissociation Rates for Rydberg Transitions in 12C16O, 13C16O, and 13C18O Involving the E 1Pi, B 1Sigma+, and W 1Pi States

One of the processes controlling the interstellar CO abundance and the ratio of its isotopologues is photodissociation. Accurate oscillator strengths and predissociation rates for Rydberg transitions are needed for modeling this process. We present results on absorption from the E ^1Pi-X ^1Sigma^+ (1-0) and B ^1Sigma^+-X ^1Sigma^+ (6-0) bands at 1051 and 1002 \AA, respectively, and the vibrational progression W ^1Pi-X ^1Sigma^+ (v'-0) bands with v' = 0 to 3 at 972, 956, 941, and 925 \AA, respectively. The corresponding spectra were acquired at the high resolution (R ~ 30,000) SU5 beam line at the Super ACO Synchrotron in Orsay, France. Spectra were obtained for the ^12C^16O, ^13C^16O, and ^13C^18O isotopologues. These represent the most complete set of measurements available. Comparison is made with earlier results, both empirical and theoretical. While earlier determinations of oscillator strengths based on absorption from synchrotron radiation tend to be somewhat smaller than ours, the suite of measurements from a variety of techniques agree for the most part considering the mutual uncertainties. For the bands studied here, their relative weakness, or their significant line widths arising from predissociation, minimizes potential problems from large optical depths at line center in absorption measurements. Predissociating line widths could generally be extracted from the spectra thanks to the profile simulations used in the analysis. In many cases, these simulations allowed us to consider e and f parity levels separately and to determine the dependence of the width on rotational quantum number, J. Our results are consistent with earlier determinations, especially the widths inferred from laser experiments

Wavelength-Dependent UV Photodesorption of Pure N2N_2 and O2O_2 Ices

Context: Ultraviolet photodesorption of molecules from icy interstellar grains can explain observations of cold gas in regions where thermal desorption is negligible. This non-thermal desorption mechanism should be especially important where UV fluxes are high. Aims: $N_2$ and $O_2$ are expected to play key roles in astrochemical reaction networks, both in the solid state and in the gas phase. Measurements of the wavelength-dependent photodesorption rates of these two infrared-inactive molecules provide astronomical and physical-chemical insights into the conditions required for their photodesorption. Methods: Tunable radiation from the DESIRS beamline at the SOLEIL synchrotron in the astrophysically relevant 7 to 13.6 eV range is used to irradiate pure $N_2$ and $O_2$ thin ice films. Photodesorption of molecules is monitored through quadrupole mass spectrometry. Absolute rates are calculated by using the well-calibrated CO photodesorption rates. Strategic $N_2$ and $O_2$ isotopolog mixtures are used to investigate the importance of dissociation upon irradiation. Results: $N_2$ photodesorption mainly occurs through excitation of the $b^1\sqcap_u$ state and subsequent desorption of surface molecules. The observed vibronic structure in the $N_2$ photodesorption spectrum, together with the absence of $N_3$ formation, supports that the photodesorption mechanism of $N_2$ is similar to CO, i.e., an indirect DIET (Desorption Induced by Electronic Transition) process without dissociation of the desorbing molecule. In contrast, $O_2$ photodesorption in the 7−13.6 eV range occurs through dissociation and presents no vibrational structure. Conclusions: Photodesorption rates of $N_2$ and $O_2$ integrated over the far-UV field from various star-forming environments are lower than for CO. Rates vary between $10^{-3}$ and $10^{-2}$ photodesorbed molecules per incoming photon.Astronom

Biomarkers of Methylmercury Exposure Immunotoxicity among Fish Consumers in Amazonian Brazil

Background: Mercury (Hg) is a ubiquitous environmental contaminant with neurodevelopmental and immune system effects. An informative biomarker of Hg-induced immunotoxicity could aid studies on the potential contribution to immune-related health effects

Critical flow prediction by system codes – Recent analyses made within the FONESYS network

A benchmark activity on Two-Phase Critical Flow (TPCF) prediction was conducted in the framework of the Forum &amp; Network of System Thermal-Hydraulics Nuclear Reactor Thermal-Hydraulics (FONESYS). FONESYS is a network among code developers who share the common objective to strengthen current technology. The aim of the FONESYS Network is to highlight the capabilities and the robustness as well as the limitations of current SYSTH codes to predict the main phenomena during transient scenarios in nuclear reactors for safety issues. Six separate effect test facilities, more than 90 tests, both in steady and transient conditions, were considered for the activity. Moreover, two ideal tests were designed for code to code comparison in clearly defined conditions. Overall eight System Thermal-Hydraulic (SYS-TH) codes were adopted, mostly by the developers themselves, ensuring the minimization of the user effect. Results from selected tests were also compared against Delayed Equilibrium Model, not yet implemented in industrial version of SYS-TH codes. Generally, the results of the benchmark show an improvement of the capability of SYS-TH codes to predict TPCF in the last three decades. However, predicting break flowrate remains a major source of uncertainty in accidental transient simulations of Water-Cooled Nuclear Reactors (WCNR). A set of possible actions is proposed to go beyond the current limitations of choked flow models. More detailed guidelines for using 0-D choked flow models is possible by using the experience gained by the benchmark results as well as all available validation results. Progress in understanding and 1-D modelling of flashing and choked flow might be achieved by a deeper physical analysis leading to more mechanistic models based on specific flow regime maps for high speed flow. Also the use of advanced 3-D numerical tools may help to understand and predict the complex 3-D geometrical effect