Minimalist AdaBoost for blemish identification in potatoes

We present a multi-class solution based on minimalist Ad- aBoost for identifying blemishes present in visual images of potatoes. Using training examples we use Real AdaBoost to rst reduce the fea- ture set by selecting ve features for each class, then train binary clas- siers for each class, classifying each testing example according to the binary classier with the highest certainty. Against hand-drawn ground truth data we achieve a pixel match of 83% accuracy in white potatoes and 82% in red potatoes. For the task of identifying which blemishes are present in each potato within typical industry dened criteria (10% coverage) we achieve accuracy rates of 93% and 94%, respectively

Direct Repeat 6 from Human Herpesvirus-6B Encodes a Nuclear Protein that Forms a Complex with the Viral DNA Processivity Factor p41

The SalI-L fragment from human herpesvirus 6A (HHV-6A) encodes a protein DR7 that has been reported to produce fibrosarcomas when injected into nude mice, to transform NIH3T3 cells, and to interact with and inhibit the function of p53. The homologous gene in HHV-6B is dr6. Since p53 is deregulated in both HHV-6A and -6B, we characterized the expression of dr6 mRNA and the localization of the translated protein during HHV-6B infection of HCT116 cells. Expression of mRNA from dr6 was inhibited by cycloheximide and partly by phosphonoacetic acid, a known characteristic of herpesvirus early/late genes. DR6 could be detected as a nuclear protein at 24 hpi and accumulated to high levels at 48 and 72 hpi. DR6 located in dots resembling viral replication compartments. Furthermore, a novel interaction between DR6 and the viral DNA processivity factor, p41, could be detected by confocal microscopy and by co-immunoprecipitation analysis. In contrast, DR6 and p53 were found at distinct subcellular locations. Together, our data imply a novel function of DR6 during HHV-6B replication

Orientation of Vortices in a Superconducting Thin-Film: Quantitative Comparison of Spin-Polarized Neutron Reflectivity and Magnetization

We present a quantitative comparison of the magnetization measured by spin-polarized neutron reflectivity (SPNR) and DC magnetometry on a 1370 \AA\ -thick Nb superconducting film. As a function of magnetic field applied in the film plane, SPNR exhibits reversible behavior whereas the DC magnetization shows substantial hysteresis. The difference between these measurements is attributed to a rotation of vortex magnetic field out of the film plane as the applied field is reduced. Since SPNR measures only the magnetization parallel to the film plane whereas DC magnetization is strongly influenced by the perpendicular component of magnetization when there is a slight sample tilt, combining the two techniques allows one to distinguish two components of magnetization in a thin film.Comment: 12 pages, 8 figures, It will be printed in PRB, Oct. 200

Effects of gap anisotropy upon the electronic structure around a superconducting vortex

An isolated single vortex is considered within the framework of the quasiclassical theory. The local density of states around a vortex is calculated in a clean type II superconductor with an anisotropy. The anisotropy of a superconducting energy gap is crucial for bound states around a vortex. A characteristic structure of the local density of states, observed in the layered hexagonal superconductor 2H-NbSe2 by scanning tunneling microscopy (STM), is well reproduced if one assumes an anisotropic s-wave gap in the hexagonal plane. The local density of states (or the bound states) around the vortex is interpreted in terms of quasiparticle trajectories to facilitate an understanding of the rich electronic structure observed in STM experiments. It is pointed out that further fine structures and extra peaks in the local density of states should be observed by STM.Comment: 11 pages, REVTeX; 20 PostScript figures; An Animated GIFS file for the star-shaped vortex bound states is available at http://mp.okayama-u.ac.jp/~hayashi/vortex.htm

Antibiotic activities of peptides, hydrogen peroxide and peroxynitrite in plant defence

Genes encoding plant antibiotic peptides show expression patterns that are consistent with a defence role. Transgenic over-expression of defence peptide genes is potentially useful to engineer resistance of plants to relevant pathogens. Pathogen mutants that are sensitive to plant peptides in vitro have been obtained and a decrease of their virulence in planta has been observed, which is consistent with their hypothetical defence role. A similar approach has been followed to elucidate the potential direct anti-microbial role of hydrogen peroxide. Additionally, a scavenger of peroxynitrite has been used to investigate its involvement in plant defenc

BtaE, an adhesin that belongs to the trimeric autotransporter family, is required for full virulence and defines a specific adhesive pole of Brucella suis

Brucella is responsible for brucellosis, one of the most common zoonoses worldwide that causes important economic losses in several countries. Increasing evidence indicates that adhesion of Brucella spp. to host cells is an important step to establish infection. We have previously shown that the BmaC unipolar monomeric autotransporter mediates the binding of Brucella suis to host cells through cell-associated fibronectin. Our genome analysis shows that the B. suis genome encodes several additional potential adhesins. In this work, we characterized a predicted trimeric autotransporter that we named BtaE. By expressing btaE in a nonadherent Escherichia coli strain and by phenotypic characterization of a B. suis ΔbtaE mutant, we showed that BtaE is involved in the binding of B. suis to hyaluronic acid. The B. suis ΔbtaE mutant exhibited a reduction in the adhesion to HeLa and A549 epithelial cells compared with the wild-type strain, and it was outcompeted by the wild-type strain in the binding to HeLa cells. The knockout btaE mutant showed an attenuated phenotype in the mouse model, indicating that BtaE is required for full virulence. BtaE was immunodetected on the bacterial surface at one cell pole. Using old and new pole markers, we observed that both the BmaC and BtaE adhesins are consistently associated with the new cell pole, suggesting that, in Brucella, the new pole is functionally differentiated for adhesion. This is consistent with the inherent polarization of this bacterium, and its role in the invasion process