Microbiology and Epidemiology of Escherichia albertii—An Emerging Elusive Foodborne Pathogen

Escherichia albertii, a close relative of E. coli, is an emerging zoonotic foodborne pathogen associated with watery diarrhea mainly in children and immunocompromised individuals. E. albertii was initially classified as eae-positive Hafnia alvei, however, as more genetic and biochemical information became available it was reassigned to its current novel taxonomy. Its infections are common under conditions of poor hygiene with confirmed transmission via contaminated water and food, mainly poultry-based products. This pathogen has been isolated from various domestic and wild animals, with most isolates being derived from birds, implying that birds among other wild animals might act as its reservoir. Due to the absence of standardized isolation and identification protocols, E. albertii can be misidentified as other Enterobacteriaceae. Exploiting phenotypes such as its inability to ferment rhamnose and xylose and PCR assays targeting E. albertii-specific genes such as the cytolethal distending toxin and the DNA-binding transcriptional activator of cysteine biosynthesis encoding genes can be used to accurately identify this pathogen. Several gaps exist in our knowledge of E. albertii and need to be bridged. A deeper understanding of E. albertii epidemiology and physiology is required to allow the development of effective measures to control its transmission and infections. Overall, current data suggest that E. albertii might play a more significant role in global infectious diarrhea cases than previously assumed and is often overlooked or misidentified. Therefore, simple, and efficient diagnostic tools that cover E. albertii biodiversity are required for effective isolation and identification of this elusive agent of diarrhea

Chemical composition of aquatic dissolved organic matter in five boreal forest catchments sampled in spring and fall seasons

The chemical composition and carbon isotope signature of aquatic dissolved organic matter (DOM) in five boreal forest catchments in Scandinavia were investigated. The DOM was isolated during spring and fall seasons using a reverse osmosis technique. The DOM samples were analyzed by elemental analysis, FT-IR, solid-state CP-MAS 13C-NMR, and C-1s NEXAFS spectroscopy. In addition, the relative abundance of carbon isotopes (12C, 13C, 14C) in the samples was measured. There were no significant differences in the chemical composition or carbon isotope signature of the DOM sampled in spring and fall seasons. Also, differences in DOM composition between the five catchments were minor. Compared to reference peat fulvic and humic acids, all DOM samples were richer in O-alkyl carbon and contained less aromatic and phenolic carbon, as shown by FT-IR, 13C-NMR, and C-1s NEXAFS spectroscopy. The DOM was clearly enriched in 14C relative to the NBS oxalic acid standard of 1950, indicating that the aquatic DOM contained considerable amounts of organic carbon younger than about 50years. The weight-based C:N ratios of 31 ± 6 and the $$\delta^{13}\hbox{C}$$ values of -29\pm2\permille indicate that the isolated DOM is of terrestrial rather than aquatic origin. We conclude that young, hydrophilic carbon compounds of terrestrial origin are predominant in the samples investigated, and that the composition of the aquatic DOM in the studied boreal forest catchments is rather stable during low to intermediate flow condition

High Spatial Resolution Quantitative Imaging by Cross-calibration Using Laser Ablation Inductively Coupled Plasma Mass Spectrometry and Synchrotron Micro-X-ray Fluorescence Technique

High spatial resolution, quantitative chemical imaging is of importance to various scientific communities, however high spatial resolution and robust quantification are not trivial to attain at the same time. In order to achieve microscopic chemical imaging with enhanced quantification capabilities, the current study links the independent and complementary advantages of two micro-analytical techniques – Synchrotron Radiation-based micro X-ray Fluorescence (SR-microXRF) and Laser Ablation Inductively Coupled Plasma Mass Spectrometry (LA-ICPMS). A cross-calibration approach is established between these two techniques and validated by one experimental demonstration. In the presented test case, the diffusion pattern of trace level Cs migrating into a heterogeneous geological medium is imaged quantitatively with high spatial resolution. The one-dimensional line scans and the two-dimensional chemical images reveal two distinct types of geochemical domains: calcium carbonate rich domains and clay rich domains. During the diffusion, Cs shows a much higher interfacial reactivity within the clay rich domain, and turns out to be nearly non-reactive in the calcium carbonate domains. Such information obtained on the micrometer scale improves our chemical knowledge concerning reactive solute transport mechanism in heterogeneous media. Related to the chosen demonstration study, the outcome of the quantitative, microscopic chemical imaging contributes to a refined safety assessment of potential host rock materials for deep-geological nuclear waste storage repositories

Isolation and purification of Cu-free methanobactin from Methylosinus trichosporium OB3b

<p>Abstract</p> <p>Background</p> <p>The isolation of highly pure copper-free methanobactin is a prerequisite for the investigation of the biogeochemical functions of this chalkophore molecule produced by methane oxidizing bacteria. Here, we report a purification method for methanobactin from <it>Methylosinus trichosporium </it>OB3b cultures based on reversed-phase HPLC fractionation used in combination with a previously reported resin extraction. HPLC eluent fractions of the resin extracted product were collected and characterized with UV-vis, FT-IR, and C-1s NEXAFS spectroscopy, as well as with elemental analysis and ESI-MS.</p> <p>Results</p> <p>The results showed that numerous compounds other than methanobactin were present in the isolate obtained with resin extraction. Molar C/N ratios, mass spectrometry measurements, and UV-vis spectra indicated that methanobactin was only present in one of the HPLC fractions. On a mass basis, methanobactin carbon contributed only 32% to the total organic carbon isolated with resin extraction. Our spectroscopic results implied that besides methanobactin, the organic compounds in the resin extract comprised breakdown products of methanobactin as well as polysaccharide-like substances.</p> <p>Conclusion</p> <p>Our results demonstrate that a purification step is indispensable in addition to resin extraction in order to obtain pure methanobactin. The proposed HPLC purification procedure is suitable for semi-preparative work and provides copper-free methanobactin.</p

Microbiology and Epidemiology of Escherichia albertii&mdash;An Emerging Elusive Foodborne Pathogen

Escherichia albertii, a close relative of E. coli, is an emerging zoonotic foodborne pathogen associated with watery diarrhea mainly in children and immunocompromised individuals. E. albertii was initially classified as eae-positive Hafnia alvei, however, as more genetic and biochemical information became available it was reassigned to its current novel taxonomy. Its infections are common under conditions of poor hygiene with confirmed transmission via contaminated water and food, mainly poultry-based products. This pathogen has been isolated from various domestic and wild animals, with most isolates being derived from birds, implying that birds among other wild animals might act as its reservoir. Due to the absence of standardized isolation and identification protocols, E. albertii can be misidentified as other Enterobacteriaceae. Exploiting phenotypes such as its inability to ferment rhamnose and xylose and PCR assays targeting E. albertii-specific genes such as the cytolethal distending toxin and the DNA-binding transcriptional activator of cysteine biosynthesis encoding genes can be used to accurately identify this pathogen. Several gaps exist in our knowledge of E. albertii and need to be bridged. A deeper understanding of E. albertii epidemiology and physiology is required to allow the development of effective measures to control its transmission and infections. Overall, current data suggest that E. albertii might play a more significant role in global infectious diarrhea cases than previously assumed and is often overlooked or misidentified. Therefore, simple, and efficient diagnostic tools that cover E. albertii biodiversity are required for effective isolation and identification of this elusive agent of diarrhea

Chemical composition of aquatic dissolved organic matter in five boreal forest catchments sampled in spring and fall seasons

ISSN:0168-2563ISSN:1573-515

Speciation of Zn in Blast Furnace Sludge from Former Sedimentation Ponds Using Synchrotron X-ray Diffraction, Fluorescence, and Absorption Spectroscopy

Blast furnace sludge (BFS), an industrial waste generated in pig iron production, typically contains high contents of iron and various trace metals of environmental concern, including Zn, Pb, and Cd. The chemical speciation of these metals in BPS is largely unknown. Here, we used a combination of synchrotron X-ray diffraction, micro-X-ray fluorescence, and X-ray absorption spectroscopy at the Zn K-edge for solid-phase Zn speciation in 12 BPS samples collected on a former BFS sedimentation pond site. Additionally, one fresh BPS was analyzed for comparison. We identified five major types of Zn species in the BFS, which occurred in variable amounts: (1) Zn in the octahedral sheets of phyllosilicates, (2) Zn sulfide minerals (ZnS, sphalerite, or wurtzite), (3) Zn in a KZn-ferrocyanide phase (K2Zn3[Fe-(CN)(6)](2)center dot 9H(2)O), (4) hydrozincite (Zn-5(OH)(6)(CO3)(2)), and (5) tetrahedrally coordinated adsorbed Zn. The minerals franklinite (ZnFe2O4) and smithsonite (ZnCO3) were not detected, and zincite (ZnO) was detected only in traces. The contents of ZnS were positively correlated with the total S contents of the BPS. Similarly, the abundance of the KZn-ferrocyanide phase was closely correlated with the total CN contents, with the stoichiometry suggesting this as cyanide phase. This study provides the first quantitative Zn speciation in BFS deposits, which is of great relevance environmental risk assessment, the development of new methods for recovering Zn and Fe from BPS, and potential applications of BFS as sorbent materials in wastewater treatment

Organomineralization processes in freshwater stromatolites: A living example from eastern Patagonia

Living stromatolites have been mostly described within shallow marine and (hyper)saline lacustrine environments. Southernmost South America lacks detailed investigations of these (organo)sedimentary buildups, particularly in regions experiencing extreme and variable environmental conditions. Here, we report and describe living freshwater stromatolites in the Maquinchao region, north-western Patagonia, Argentina. Fossil stromatolites characterized by globular and cauliflower shapes are also present in a continuous palaeoshoreline of a former lake at an altitude of 830 m, whereas their living counterparts only occur in the calm waters of sheltered or meandering sections of the Maquinchao River

Speciation and mobility of mercury in soils contaminated by legacy emissions from a chemical factory in the Rhone Valley in Canton of Valais, Switzerland

Legacy contamination of soils and sediments with mercury (Hg) can pose serious threats to the environment and to human health. Assessing risks and possible remediation strategies must consider the chemical forms of Hg, as different Hg species exhibit vastly different environmental behaviors and toxicities. Here, we present a study on Hg speciation and potential mobility in sediments from a chemical factory site, and soils from nearby settlement areas in the canton of Valais, Switzerland. Total Hg ranged from 0.5 to 28.4 mg/kg in the soils, and 3.5 to 174.7 mg/kg in the sediments, respectively. Elemental Hg(0) was not detectable in the soils by thermal desorption analysis. Methylmercury, the most toxic form of Hg, was present at low levels in all soils (<0.010 mg/kg; <0.8% of total Hg). Sequential extractions and thermal desorption analyses suggested that most of the Hg in the soils was present as “matrix-bound Hg(II)”, most likely associated with soil organic matter. For factory sediments, which contained less organic matter, the results suggested a higher fraction of sulfide-bound Hg. Batch extractions in different CaCl2 solutions revealed that Hg solubility was low overall, and there was no Hg-mobilizing effects of Ca2+ or Cl− in solution. Only in some of the factory sediments did high CaCl2 concentrations result in increased extractability of Hg, due to the formation of Hg-chloride complexes. Additional experiments with soil redox reactors showed that even mildly reducing conditions led to a sharp release of Hg into solution, which may be highly relevant in soils that are prone to periodic water saturation of flooding