Automated Video Analysis of Animal Movements Using Gabor Orientation Filters

To quantify locomotory behavior, tools for determining the location and shape of an animal’s body are a first requirement. Video recording is a convenient technology to store raw movement data, but extracting body coordinates from video recordings is a nontrivial task. The algorithm described in this paper solves this task for videos of leeches or other quasi-linear animals in a manner inspired by the mammalian visual processing system: the video frames are fed through a bank of Gabor filters, which locally detect segments of the animal at a particular orientation. The algorithm assumes that the image location with maximal filter output lies on the animal’s body and traces its shape out in both directions from there. The algorithm successfully extracted location and shape information from video clips of swimming leeches, as well as from still photographs of swimming and crawling snakes. A Matlab implementation with a graphical user interface is available online, and should make this algorithm conveniently usable in many other contexts

Strategies to augment volitional and reflex function may improve locomotor capacity following incomplete spinal cord injury

Many studies highlight the remarkable plasticity demonstrated by spinal circuits following an incomplete spinal cord injury (SCI). Such plasticity can contribute to improvements in volitional motor recovery, such as walking function, although similar mechanisms underlying this recovery may also contribute to the manifestation of exaggerated responses to afferent input, or spastic behaviors. Rehabilitation interventions directed toward augmenting spinal excitability have shown some initial success in improving locomotor function. However, the potential effects of these strategies on involuntary motor behaviors may be of concern. In this article, we provide a brief review of the mechanisms underlying recovery of volitional function and exaggerated reflexes, and the potential overlap between these changes. We then highlight findings from studies that explore changes in spinal excitability during volitional movement in controlled conditions, as well as altered kinematic and behavioral performance during functional tasks. The initial focus will be directed toward recovery of reflex and volitional behaviors following incomplete SCI, followed by recent work elucidating neurophysiological mechanisms underlying patterns of static and dynamic muscle activation following chronic incomplete SCI during primarily single-joint movements. We will then transition to studies of locomotor function and the role of altered spinal integration following incomplete SCI, including enhanced excitability of specific spinal circuits with physical and pharmacological interventions that can modulate locomotor output. The effects of previous and newly developed strategies will need to focus on changes in both volitional function and involuntary spastic reflexes for the successful translation of effective therapies to the clinical setting

Stochastic Matrix Product States

The concept of stochastic matrix product states is introduced and a natural form for the states is derived. This allows to define the analogue of Schmidt coefficients for steady states of non-equilibrium stochastic processes. We discuss a new measure for correlations which is analogous to the entanglement entropy, the entropy cost $S_C$, and show that this measure quantifies the bond dimension needed to represent a steady state as a matrix product state. We illustrate these concepts on the hand of the asymmetric exclusion process

Last Settler’s Syndrome and Land Use Change in Southern Appalachia

In many rural areas land use patterns are shifting from agriculture or woodland to residential development. This is especially true in areas possessing significant natural amenities like the sweeping vistas, white-water rivers, and blue-ridged mountains of Southern Appalachia. As in-migration increases, decisions about land use can become heated as the “newcomers” square off with long-time residents. Understanding how various groups value both the land (as productive resource) and the landscape (as scenic amenity) can help address potential conflict when land use changes. Two independent projects in Watauga County, North Carolina, reflect attempts to understand perspectives on land use through an economic framework and to address land use change from an environmental perspective. Both projects reveal evidence of “last settler’s syndrome”—a tendency among individuals to place a high value on what initially attracted them to a specific place. Both also reveal situations of potential conflict when ideas about land use clash as well as situations for cooperation as various groups share values about land use. Key Words:

Fitness components and natural selection: why are there different patterns on the emergence of drug resistance in Plasmodium falciparum and Plasmodium vivax?

BACKGROUND: Considering the distinct biological characteristics of Plasmodium species is crucial for control and elimination efforts, in particular when facing the spread of drug resistance. Whereas the evolutionary fitness of all malarial species could be approximated by the probability of being taken by a mosquito and then infecting a new host, the actual steps in the malaria life cycle leading to a successful transmission event show differences among Plasmodium species. These “steps” are called fitness components. Differences in terms of fitness components may affect how selection imposed by interventions, e.g. drug treatments, differentially acts on each Plasmodium species. Thus, a successful malaria control or elimination programme should understand how differences in fitness components among different malaria species could affect adaptive evolution (e.g. the emergence of drug resistance). In this investigation, the interactions between some fitness components and natural selection are explored. METHODS: A population-genetic model is formulated that qualitatively explains how different fitness components (in particular gametocytogenesis and longevity of gametocytes) affect selection acting on merozoites during the erythrocytic cycle. By comparing Plasmodium falciparum and Plasmodium vivax, the interplay of parasitaemia and gametocytaemia dynamics in determining fitness is modelled under circumstances that allow contrasting solely the differences between these two parasites in terms of their fitness components. RESULTS: By simulating fitness components, it is shown that selection acting on merozoites (e.g., on drug resistant mutations or malaria antigens) is more efficient in P. falciparum than in P. vivax. These results could explain, at least in part, why resistance against drugs, such as chloroquine (CQ) is highly prevalent in P. falciparum worldwide, while CQ is still a successful treatment for P. vivax despite its massive use. Furthermore, these analyses are used to explore the importance of understanding the dynamic of gametocytaemia to ascertain the spreading of drug resistance. CONCLUSIONS: The strength of natural selection on mutations that express their advantage at the merozoite stage is different in P. vivax and P. falciparum. Species-specific differences in gametocytogenesis and longevity of gametocytes need to be accounted for when designing effective malaria control and elimination programmes. There is a need for reliable data on gametocytogenesis from field studies

Non-equilibrium dynamics of a Bose-Einstein condensate in an optical lattice

The dynamical evolution of a Bose-Einstein condensate trapped in a one-dimensional lattice potential is investigated theoretically in the framework of the Bose-Hubbard model. The emphasis is set on the far-from-equilibrium evolution in a case where the gas is strongly interacting. This is realized by an appropriate choice of the parameters in the Hamiltonian, and by starting with an initial state, where one lattice well contains a Bose-Einstein condensate while all other wells are empty. Oscillations of the condensate as well as non-condensate fractions of the gas between the different sites of the lattice are found to be damped as a consequence of the collisional interactions between the atoms. Functional integral techniques involving self-consistently determined mean fields as well as two-point correlation functions are used to derive the two-particle-irreducible (2PI) effective action. The action is expanded in inverse powers of the number of field components N, and the dynamic equations are derived from it to next-to-leading order in this expansion. This approach reaches considerably beyond the Hartree-Fock-Bogoliubov mean-field theory, and its results are compared to the exact quantum dynamics obtained by A.M. Rey et al., Phys. Rev. A 69, 033610 (2004) for small atom numbers.Comment: 9 pages RevTeX, 3 figure

Quantities that frequency-dependent selection maximizes

We consider a model of frequency-dependent selection, to which we refer as the Wildcard Model, that accommodates as particular cases a number of diverse models of biologically specific situations. Two very different particular models (Lessard, 1984; Bürger, 2005; Schneider, 2006), subsumed by the Wildcard Model, have been shown in the past to have a Lyapunov functions (LF) under appropriate genetic assumptions. We show that the Wildcard Model: (i) in continuous time is a generalized gradient system for one locus, multiple alleles and for multiple loci, assuming linkage equilibrium, and its potential is a Lyapunov function; (ii) the LF of the particular models are special cases of the Wildcard Model's LF; (iii) the LF of the Wildcard Model can be derived from a LF previously identified for a model of density- and frequency- dependent selection due to Lotka-Volterra competition, with one locus, multiple alleles, multiple species and continuous-time dynamics (Matessi and Jayakar, 1981). We extend the LF with density and frequency dependence to a multilocus, linkage equilibrium dynamics

Fluorescence measurements of expanding strongly-coupled neutral plasmas

We report new detailed density profile measurements in expanding strongly-coupled neutral plasmas. Using laser-induced fluorescence techniques, we determine plasma densities in the range of 10^5 to 10^9/cm^3 with a time resolution limit as small as 7 ns. Strong-coupling in the plasma ions is inferred directly from the fluorescence signals. Evidence for strong-coupling at late times is presented, confirming a recent theoretical result.Comment: submitted to PR

Macroeconomic trends and practice models impacting acute care surgery

Acute care surgery (ACS) diagnoses are responsible for approximately a quarter of the costs of inpatient care in the US government, and individuals will be responsible for a larger share of the costs of this healthcare as the population ages. ACS as a specialty thus has the opportunity to meet a significant healthcare need, and by optimizing care delivery models do so in a way that improves both quality and value. ACS practice models that have maintained or added emergency general surgery (EGS) and even elective surgery have realized more operative case volume and surgeon satisfaction. However, vulnerabilities exist in the ACS model. Payer mix in a practice varies by geography and distribution of EGS, trauma, critical care, and elective surgery. Critical care codes constitute approximately 25% of all billing by acute care surgeons, so even small changes in reimbursement in critical care can have significant impact on professional revenue. Staffing an ACS practice can be challenging depending on reimbursement and due to uneven geographic distribution of available surgeons. Empowered by an understanding of economics, using team-oriented leadership inherent to trauma surgeons, and in partnership with healthcare organizations and regulatory bodies, ACS surgeons are positioned to significantly influence the future of healthcare in the USA

Effect of environmental variables and kdr resistance genotype on survival probability and infection rates in Anopheles gambiae (s.s.).

BACKGROUND: Environmental factors, especially ambient temperature and relative humidity affect both mosquitoes and malaria parasites. The early part of sporogony is most sensitive and is affected by high temperatures and temperature fluctuation immediately following ingestion of an infectious blood meal. The aim of this study was to explore whether environmental variables such as temperature, together with the presence of the kdr insecticide resistance mutations, have an impact on survival probability and infection rates in wild Anopheles gambiae (s.s.) exposed and unexposed to a pyrethroid insecticide. METHODS: Anopheles gambiae (s.s.) were collected as larvae, reared to adults, and fed on blood samples from 42 Plasmodium falciparum-infected local patients at a health facility in mid-western Uganda, then exposed either to nets treated with sub-lethal doses of deltamethrin or to untreated nets. After seven days, surviving mosquitoes were dissected and their midguts examined for oocysts. Prevalence (proportion infected) and intensity of infection (number of oocysts per infected mosquito) were recorded for each group. Mosquito mortality was recorded daily. Temperature and humidity were recorded every 30 minutes throughout the experiments. RESULTS: Our findings indicate that apart from the effect of deltamethrin exposure, mean daily temperature during the incubation period, temperature range during the first 24 hours and on day 4 post-infectious feed had a highly significant effect on the risk of infection. Deltamethrin exposure still significantly impaired survival of kdr homozygous mosquitoes, while mean daily temperature and relative humidity during the incubation period independently affected mosquito mortality. Significant differences in survival of resistant genotypes were detected, with the lowest survival recorded in mosquitoes with heterozygote L1014S/L1014F genotype. CONCLUSIONS: This study confirmed that the early part of sporogony is most affected by temperature fluctuations, while environmental factors affect mosquito survival. The impact of insecticide resistance on malaria infection and vector survival needs to be assessed separately for mosquitoes with different resistance mechanisms to fully understand its implications for currently available vector control tools and malaria transmission