Inter-comparison of phytoplankton functional type phenology metrics derived from ocean color algorithms and earth system models

Ocean color remote sensing of chlorophyll concentration has revolutionized our understanding of the biology of the oceans. However, a comprehensive understanding of the structure and function of oceanic ecosystems requires the characterization of the spatio-temporal variability of various phytoplankton functional types (PFTs), which have differing biogeochemical roles. Thus, recent bio-optical algorithm developments have focused on retrieval of various PFTs. It is important to validate and inter-compare the existing PFT algorithms; however direct comparison of retrieved variables is non-trivial because in those algorithms PFTs are defined differently. Thus, it is more plausible and potentially more informative to focus on emergent properties of PFTs, such as phenology. Furthermore, ocean color satellite PFT data sets can play a pivotal role in informing and/or validating the biogeochemical routines of Earth System models. Here, the phenological characteristics of 10 PFT satellite algorithms and 7 latest-generation climate models from the Coupled Model Inter-comparison Project (CMIP5) are inter-compared as part of the International Satellite PFT Algorithm Inter-comparison Project. The comparison is based on monthly satellite data (mostly SeaWiFS) for the 2003-2007 period. The phenological analysis is based on the fraction of microplankton or a similar variable for the satellite algorithms and on the carbon biomass due to diatoms for the climate models. The seasonal cycle is estimated on a per-pixel basis as a sum of sinusoidal harmonics, derived from the Discrete Fourier Transform of the variable time series. Peak analysis is then applied to the estimated seasonal signal and the following phenological parameters are quantified for each satellite algorithm and climate model: seasonal amplitude, percent seasonal variance, month of maximum, and bloom duration. Secondary/double blooms occur in many areas and are also quantified. The algorithms and the models are quantitatively compared based on these emergent phenological parameters. Results indicate that while algorithms agree to a first order on a global scale, large differences among them exist; differences are analyzed in detail for two Longhurst regions in the North Atlantic: North Atlantic Drift Region (NADR) and North Atlantic Subtropical Gyre West (NASW). Seasonal cycles explain the most variance in zonal bands in the seasonally-stratified subtropics at about 30 latitude in the satellite PFT data. The CMIP5 models do not reproduce this pattern, exhibiting higher seasonality in mid and high-latitudes and generally much more spatially homogeneous patterns in phenological indices compared to satellite data. Satellite data indicate a complex structure of double blooms in the Equatorial region and mid-latitudes, and single blooms on the poleward edges of the subtropical gyres. In contrast, the CMIP5 models show single annual blooms over most of the ocean except for the Equatorial band and Arabian Sea

Ocean Color Algorithm for the Retrieval of the Particle Size Distribution and Carbon-Based Phytoplankton Size Classes Using a Two-Component Coated-Spheres Backscattering Model

The particle size distribution (PSD) of suspended particles in near-surface seawater is a key property linking biogeochemical and ecosystem characteristics with optical properties that affect ocean color remote sensing. Phytoplankton size affects their physiological characteristics and ecosystem and biogeochemical roles, e.g. in the biological carbon pump, which has an important role in the global carbon cycle and thus climate. It is thus important to develop capabilities for measurement and predictive understanding of the structure and function of oceanic ecosystems, including the PSD, phytoplankton size classes (PSCs) and phytoplankton functional types (PFTs). Here, we present an ocean color satellite algorithm for the retrieval of the parameters of an assumed power-law PSD. The forward optical model considers two distinct particle populations (particle assemblage categories) &mdash; phytoplankton and non-algal particles (NAP). Phytoplankton are modeled as coated spheres following the Equivalent Algal Populations (EAP) framework, and NAP are modeled as homogeneous spheres. The forward model uses Mie and Aden-Kerker scattering computations, for homogeneous and coated spheres (for phytoplankton and NAP, respectively) to model the total particulate spectral backscattering coefficient as the sum of phytoplankton and NAP backscattering. The PSD retrieval is achieved via Spectral Angle Mapping (SAM) which uses backscattering end-members created by the forward model. The PSD is used to retrieve size-partitioned absolute and fractional phytoplankton carbon concentrations (i.e. carbon-based PSCs), as well as particulate organic carbon (POC), using allometric coefficients. The EAP-based formulation allows for the estimation of chlorophyll-a concentration via the retrieved PSD, as well as the estimation of the percent of backscattering due to NAP vs. phytoplankton. The PSD algorithm is operationally applied to the merged Ocean Colour Climate Change Initiative (OC-CCI) v5.0 ocean color data set. Results of an initial validation effort are also presented, using PSD, POC, and pico-phytoplankton carbon in-situ measurements. Validation results indicate the need for an empirical tuning for the absolute phytoplankton carbon concentrations; however these results and comparison with other phytoplankton carbon algorithms are ambiguous as to the need for the tuning. The latter finding illustrates the continued need for high-quality, consistent, large global data sets of phytoplankton carbon and related variables to facilitate future algorithm improvements.</p

Ocean carbon from space: Current status and priorities for the next decade

The ocean plays a central role in modulating the Earth\u27s carbon cycle. Monitoring how the ocean carbon cycle is changing is fundamental to managing climate change. Satellite remote sensing is currently our best tool for viewing the ocean surface globally and systematically, at high spatial and temporal resolutions, and the past few decades have seen an exponential growth in studies utilising satellite data for ocean carbon research. Satellite-based observations must be combined with in-situ observations and models, to obtain a comprehensive view of ocean carbon pools and fluxes. To help prioritise future research in this area, a workshop was organised that assembled leading experts working on the topic, from around the world, including remote-sensing scientists, field scientists and modellers, with the goal to articulate a collective view of the current status of ocean carbon research, identify gaps in knowledge, and formulate a scientific roadmap for the next decade, with an emphasis on evaluating where satellite remote sensing may contribute. A total of 449 scientists and stakeholders participated (with balanced gender representation), from North and South America, Europe, Asia, Africa, and Oceania. Sessions targeted both inorganic and organic pools of carbon in the ocean, in both dissolved and particulate form, as well as major fluxes of carbon between reservoirs (e.g., primary production) and at interfaces (e.g., air-sea and land–ocean). Extreme events, blue carbon and carbon budgeting were also key topics discussed. Emerging priorities identified include: expanding the networks and quality of in-situ observations; improved satellite retrievals; improved uncertainty quantification; improved understanding of vertical distributions; integration with models; improved techniques to bridge spatial and temporal scales of the different data sources; and improved fundamental understanding of the ocean carbon cycle, and of the interactions among pools of carbon and light. We also report on priorities for the specific pools and fluxes studied, and highlight issues and concerns that arose during discussions, such as the need to consider the environmental impact of satellites or space activities; the role satellites can play in monitoring ocean carbon dioxide removal approaches; economic valuation of the satellite based information; to consider how satellites can contribute to monitoring cycles of other important climatically-relevant compounds and elements; to promote diversity and inclusivity in ocean carbon research; to bring together communities working on different aspects of planetary carbon; maximising use of international bodies; to follow an open science approach; to explore new and innovative ways to remotely monitor ocean carbon; and to harness quantum computing. Overall, this paper provides a comprehensive scientific roadmap for the next decade on how satellite remote sensing could help monitor the ocean carbon cycle, and its links to the other domains, such as terrestrial and atmosphere

Graded bandgap semiconductor thin film photoelectrodes

The differences among phytoplankton carbon (Cphy) predictions from six ocean color algorithms are investigated by comparison with in situ estimates of phytoplankton carbon. The common satellite data used as input for the algorithms is the Ocean Color Climate Change Initiative merged product. The matching in situ data are derived from flow cytometric cell counts and per-cell carbon estimates for different types of pico-phytoplankton. This combination of satellite and in situ data provides a relatively large matching dataset (N &gt; 500), which is independent from most of the algorithms tested and spans almost two orders of magnitude in Cphy. Results show that not a single algorithm outperforms any of the other when using all matching data. Concentrating on the oligotrophic regions (Chlorophyll-a concentration, B, less than 0.15 mg Chl m−3), where flow cytometric analysis captures most of the phytoplankton biomass, reveals significant differences in algorithm performance. The bias ranges from −35 to +150% and unbiased root mean squared difference from 5 to 10 mg C m−3 among algorithms, with chlorophyll-based algorithms performing better than the rest. The backscattering-based algorithms produce different results at the clearest waters and these differences are discussed in terms of the different algorithms used for optical particle backscattering coefficient (bbp) retrieval

Particle Size Distribution and Size-partitioned Phytoplankton Carbon Using a Two-Component Coated-Spheres Bio-optical Model: Monthly Global 4 km Imagery Based on the OC-CCI v5.0 Merged Ocean Color Satellite Data Set

Monthly global 4km satellite products spanning September 1997 to December 2020. The data contains Particle Size Distribution (PSD) parameters of an assumed power-law PSD, absolute and fractional size-partitioned phytoplankton carbon and associated variables such as particulate organic carbon (POC) and Chlorophyll-a as derived from the PSD algorithm. The retrieval is based on a backscattering bio-optical model using two particle populations and coated spheres for phytoplankton inherent optical properties (IOP) modeling, and a retrieval using spectral angle mapping (SAM - where satellite spectra are classified using a comparison to a collection of modeled end-member spectra, by treating spectra as vectors and using their dot product). Partial uncertainties are given as standard deviation and are estimated using a combination of Monte Carlo simulations and analytical error propagation. An empirical tuning factor is given for attaining more realistic estimated model concentrations of POC and Chlorophyll-a. The tuning factor is multiplicative, to be applied in linear space. This tuning factor has not been applied to the monthly data, users can choose whether or not to apply it to absolute carbon and Chlorophyll-a concentrations. The factor does not affect retrievals of fractional contributions of phytoplankton size classes to total phytoplankton carbon. Monthly climatologies files and an overall climatology file are also provided, and in those files, both untuned (tuning factor not applied) and tuned (tuning factor applied) variables are provided, for user convenience. Input remote-sensing reflectance data are v5.0 of the Ocean Colour -Climate Change Initiative (OC-CCI) of the European Space Agency. The OC-CCI general reference is Sathyendranath et al. (2019; doi:10.3390/s19194285), and for v5.0 of the dataset, the reference is Sathyendranath et al. (2021; doi:10.5285/1dbe7a109c0244aaad713e078fd3059a). More detailed metadata, including geospatial metadata, are given in the netCDF files. Variable names should be self-explanatory. Quick browse images are provided as well. Coastlines in these quick browse images are from v2.3.7 of the GSHHS data set - see Wessel and Smith (1996) (doi:10.1029/96JB00104). Modeling and data processing was done in MATLAB ®

Ocean color algorithm for the retrieval of the particle size distribution and carbon-based phytoplankton size classes using a two-component coated-spheres backscattering model

The particle size distribution (PSD) of suspended particles in near-surface seawater is a key property linking biogeochemical and ecosystem characteristics with optical properties that affect ocean color remote sensing. Phytoplankton size affects their physiological characteristics and ecosystem and biogeochemical roles, e.g. in the biological carbon pump, which has an important role in the global carbon cycle and thus climate. It is thus important to develop capabilities for measurement and predictive understanding of the structure and function of oceanic ecosystems, including the PSD, phytoplankton size classes (PSCs) and phytoplankton functional types (PFTs). Here, we present an ocean color satellite algorithm for the retrieval of the parameters of an assumed power-law PSD. The forward optical model considers two distinct particle populations - phytoplankton and non-algal particles (NAP). Phytoplankton are modeled as coated spheres following the Equivalent Algal Populations (EAP) framework, and NAP are modeled as homogeneous spheres. The forward model uses Mie and Aden-Kerker scattering computations, for homogeneous and coated spheres, respectively, to model the total particulate spectral backscattering coefficient as the sum of phytoplankton and NAP backscattering. The PSD retrieval is achieved via Spectral Angle Mapping (SAM) which uses backscattering end-members created by the forward model. The PSD is used to retrieve size-partitioned absolute and fractional phytoplankton carbon concentrations (i.e. carbon-based PSCs), as well as particulate organic carbon (POC), using allometric coefficients. This model formulation also allows the estimation of chlorophyll-a concentration via the retrieved PSD, as well as percent of backscattering due to NAP vs. phytoplankton. The PSD algorithm is operationally applied to the merged Ocean Colour Climate Change Initiative (OC-CCI) v5.0 ocean color data set. Results of an initial validation effort are also presented, using PSD, POC, and pico-phytoplankton carbon in-situ measurements. Validation results indicate the need for an empirical tuning for the absolute phytoplankton carbon concentrations; however these results and comparison with other phytoplankton carbon algorithms are ambiguous as to the need for the tuning. The latter finding illustrates the continued need for high-quality, consistent, large global data sets of PSD, phytoplankton carbon and related variables to facilitate future algorithm improvements

Sensing the ocean biological carbon pump from space: A review of capabilities, concepts, research gaps and future developments

The element carbon plays a central role in climate and life on Earth. It is capable of moving among the geosphere, cryosphere, atmosphere, biosphere and hydrosphere. This flow of carbon is referred to as the Earth's carbon cycle. It is also intimately linked to the cycling of other elements and compounds. The ocean plays a fundamental role in Earth's carbon cycle, helping to regulate atmospheric CO2 concentration. The ocean biological carbon pump (OBCP), defined as a set of processes that transfer organic carbon from the surface to the deep ocean, is at the heart of the ocean carbon cycle. Monitoring the OBCP is critical to understanding how the Earth's carbon cycle is changing. At present, satellite remote sensing is the only tool available for viewing the entire surface ocean at high temporal and spatial scales. In this paper, we review methods for monitoring the OBCP with a focus on satellites. We begin by providing an overview of the OBCP, defining and describing the pools of carbon in the ocean, and the processes controlling fluxes of carbon between the pools, from the surface to the deep ocean, and among ocean, land and atmosphere. We then examine how field measurements, from ship and autonomous platforms, complement satellite observations, provide validation points for satellite products and lead to a more complete view of the OBCP than would be possible from satellite observations alone. A thorough analysis is then provided on methods used for monitoring the OBCP from satellite platforms, covering current capabilities, concepts and gaps, and the requirement for uncertainties in satellite products. We finish by discussing the potential for producing a satellite-based carbon budget for the oceans, the advantages of integrating satellite-based observations with ecosystem models and field measurements, and future opportunities in space, all with a view towards bringing satellite observations into the limelight of ocean carbon research

Ocean carbon from space: Current status and priorities for the next decade

This work is a contribution to the Ocean Colour Radiometry Virtual Constellation (OCR-VC) of the Committee on Earth Observation Satellites (CEOS), through the International Ocean Colour Coordinating Group. This paper is also a contribution towards the preparation of the Aquatic Carbon Roadmap of CEOS over the next couple of years.-- 41 pages, 3 figures, 10 tables.-- Data availability: Data for Fig. 1a were generated from a free Scopus (https://www.scopus.com/) search of the terms "Ocean carbon satellite" (using All fields) in March 2022. Data from Fig. 1b and 1c were generated from the workshop registration and are available within the figure (participation number, geographical representation and gender split)The ocean plays a central role in modulating the Earth’s carbon cycle. Monitoring how the ocean carbon cycle is changing is fundamental to managing climate change. Satellite remote sensing is currently our best tool for viewing the ocean surface globally and systematically, at high spatial and temporal resolutions, and the past few decades have seen an exponential growth in studies utilising satellite data for ocean carbon research. Satellite-based observations must be combined with in-situ observations and models, to obtain a comprehensive view of ocean carbon pools and fluxes. To help prioritise future research in this area, a workshop was organised that assembled leading experts working on the topic, from around the world, including remote-sensing scientists, field scientists and modellers, with the goal to articulate a collective view of the current status of ocean carbon research, identify gaps in knowledge, and formulate a scientific roadmap for the next decade, with an emphasis on evaluating where satellite remote sensing may contribute. A total of 449 scientists and stakeholders participated (with balanced gender representation), from North and South America, Europe, Asia, Africa, and Oceania. Sessions targeted both inorganic and organic pools of carbon in the ocean, in both dissolved and particulate form, as well as major fluxes of carbon between reservoirs (e.g., primary production) and at interfaces (e.g., air-sea and land–ocean). Extreme events, blue carbon and carbon budgeting were also key topics discussed. Emerging priorities identified include: expanding the networks and quality of in-situ observations; improved satellite retrievals; improved uncertainty quantification; improved understanding of vertical distributions; integration with models; improved techniques to bridge spatial and temporal scales of the different data sources; and improved fundamental understanding of the ocean carbon cycle, and of the interactions among pools of carbon and light. We also report on priorities for the specific pools and fluxes studied, and highlight issues and concerns that arose during discussions, such as the need to consider the environmental impact of satellites or space activities; the role satellites can play in monitoring ocean carbon dioxide removal approaches; economic valuation of the satellite based information; to consider how satellites can contribute to monitoring cycles of other important climatically-relevant compounds and elements; to promote diversity and inclusivity in ocean carbon research; to bring together communities working on different aspects of planetary carbon; maximising use of international bodies; to follow an open science approach; to explore new and innovative ways to remotely monitor ocean carbon; and to harness quantum computing. Overall, this paper provides a comprehensive scientific roadmap for the next decade on how satellite remote sensing could help monitor the ocean carbon cycle, and its links to the other domains, such as terrestrial and atmosphereThis work was funded through a European Space Agency (ESA) project “Biological Pump and Carbon Exchange Processes (BICEP)” and by the Simons Foundation Project “Collaboration on Computational Biogeochemical Modeling of Marine Ecosystems (CBIOMES)” (549947, SS). It was also supported by the UK National Centre for Earth Observation (NCEO). Additional support from the Ocean Colour Component of the Climate Change Initiative of the European Space Agency (ESA) is gratefully acknowledged. Robert J. W. Brewin is supported by a UKRI Future Leader Fellowship (MR/V022792/1). Robert J. W. Brewin, Giorgio Dall'Olmo and Gavin H. Tilstone were supported by the Atlantic Meridional Transect Programme. Thomas Frölicher was supported by the Swiss National Science Foundation (Grant No. PP00P2_198897). Astrid Bracher’s contribution is funded by the ESA 656 708 S5P + Innovation Theme 7 Ocean Colour (S5POC) project (No 4000127533/19/I-NS). Jamie Shutler acknowledges support from the ESA Ocean Health Ocean Acidification project (No. AO/1-10757/21/I-DT)With the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S)Peer reviewe