121 research outputs found

    Repair of \u3cem\u3eO\u3c/em\u3e\u3csup\u3e6\u3c/sup\u3e-Methylguanine Adducts in Human Telomeric G-Quadruplex DNA by \u3cem\u3eO\u3c/em\u3e\u3csup\u3e6\u3c/sup\u3e-Alkylguanine-DNA Alkyltransferase

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    O6-alkylguanine-DNA alkyltransferase (AGT) is a single-cycle DNA repair enzyme that removes pro-mutagenic O6-alkylguanine adducts from DNA. Its functions with short single-stranded and duplex substrates have been characterized, but its ability to act on other DNA structures remains poorly understood. Here, we examine the functions of this enzyme on O6-methylguanine (6mG) adducts in the four-stranded structure of the human telomeric G-quadruplex. On a folded 22-nt G-quadruplex substrate, binding saturated at 2 AGT:DNA, significantly less than the ~ 5 AGT:DNA found with linear single-stranded DNAs of similar length, and less than the value found with the telomere sequence under conditions that inhibit quadruplex formation (4 AGT:DNA). Despite these differences, AGT repaired 6mG adducts located within folded G-quadruplexes, at rates that were comparable to those found for a duplex DNA substrate under analogous conditions. Repair was kinetically biphasic with the amplitudes of rapid and slow phases dependent on the position of the adduct within the G-quadruplex: in general, adducts located in the top or bottom tetrads of a quadruplex stack exhibited more rapid-phase repair than did adducts located in the inner tetrad. This distinction may reflect differences in the conformational dynamics of 6mG residues in G-quadruplex DNAs

    Spacecraft Materials in the Space Flight Environment: International Space Station - May 2002 to May 2007

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    The performance of ISS spacecraft materials and systems on prolonged exposure to the low-Earth orbit (LEO) space flight is reported in this paper. In-flight data, flight crew observations, and the results of ground-based test and analysis directly supporting programmatic and operational decision-making are presented. The space flight environments definitions (both natural and induced) used for ISS design, material selection, and verification testing are shown, in most cases, to be more severe than the actual flight environment accounting for the outstanding performance of ISS as a long mission duration spacecraft. No significant ISS material or system failures have been attributed to spacecraft-environments interactions. Nonetheless, ISS materials and systems performance data is contributing to our understanding of spacecraft material interactions in the spaceflight environment so as to reduce cost and risk for future spaceflight projects and programs. Orbital inclination (51.6o) and altitude (nominally near 360 km) determine the set of natural environment factors affecting the functional life of materials and systems on ISS. ISS operates in an electrically conducting environment (the F2 region of Earth s ionosphere) with well-defined fluxes of atomic oxygen, other charged and neutral ionospheric plasma species, solar UV, VUV, and x-ray radiation as well as galactic cosmic rays, trapped radiation, and solar cosmic rays (1-4). The LEO micrometeoroid and orbital debris environment is an especially important determinant of spacecraft design and operations (5, 6). The magnitude of several environmental factors varies dramatically with latitude and longitude as ISS orbits the Earth (1-4). The high latitude orbital environment also exposes ISS to higher fluences of trapped energetic electrons, auroral electrons, solar cosmic rays, and galactic cosmic rays (1-4) than would be the case in lower inclination orbits, largely as a result of the overall shape and magnitude of the geomagnetic field (1-4). As a result, ISS exposure to many environmental factors can vary dramatically along a particular orbital ground track, and from one ground track to the next, during any 24-hour period

    Warner-Bratzler shear force values and ranges of steaks from cattle of known sires

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    Carcass data and Warner-Bratzler shear force (WBSF) data on strip loin steaks were collected from nearly 8,500 cattle in contemporary groups of progeny from the more popular sires in 14 different beef cattle breeds in the Carcass Merit Traits project funded by Beef Checkoff dollars, the breed associations, and MMI Genomics. In addition, trained sensory panel evaluations were conducted on over 2,500 strip loin steaks from contemporary groups of progeny from five sires included in the DNA marker validation component of the project. The correlation between WBSF and tenderness scored by the trained sensory panel was -0.82, indicating that as WBSF increased, tenderness scored by the sensory panel decreased. Our results showed that a WBSF value of ≥ 11.0 lb generally results in a sensory score of slightly tough or tougher. In this study, 22.8% of the cattle had WBSF values ≥ 11.0 lb and 26.3% had sensory scores of slightly tough or tougher. The phenotypic range of WBSF means for sires within breeds ranged from 1.9 to 6.6 lb. The phenotypic range of WBSF means across breeds was 8.9 lb, whereas the range among sires across breeds was a dramatic 14.4 lb. The phenotypic range for flavor intensity scores among sires within and across breeds was much smaller than for tenderness, with juiciness scores being intermediate. The 40 widely used sires that produced progeny with steaks that were unacceptable in tenderness in this study might be expected to be sires of several thousand bulls used in commercial herds. This demonstrates that seedstock producers should aggressively utilize sires that have genetics for tender meat

    Expanding the Y Dwarf Census with Spitzer Follow-up of the Coldest CatWISE Solar Neighborhood Discoveries

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    We present Spitzer 3.6 and 4.5 μm follow-up of 170 candidate extremely cool brown dwarfs newly discovered via the combination of Wide-field Infrared Survey Explorer (WISE) and NEOWISE imaging at 3–5 μm. CatWISE, a joint analysis of archival WISE and NEOWISE data, has improved upon the motion measurements of AllWISE by leveraging a >10× time baseline enhancement, from 0.5 yr (AllWISE) to 6.5 yr (CatWISE). As a result, CatWISE motion selection has yielded a large sample of previously unrecognized brown dwarf candidates, many of which have archival detections exclusively in the WISE 4.6 μm (W2) channel, suggesting that they could be both exceptionally cold and nearby. Where these objects go undetected in WISE W1 (3.4 μm), Spitzer can provide critically informative detections at 3.6 μm. Of our motion-confirmed discoveries, 17 have a best-fit Spitzer [3.6]–[4.5] color most consistent with spectral type Y. It is likely that CWISEP J144606.62–231717.8 (μ ≈ 1.”3 yr⁻¹) is the reddest, and therefore potentially coldest, member of our sample with a very uncertain [3.6]–[4.5] color of 3.71 ± 0.44 mag. We also highlight our highest proper-motion discovery, WISEA J153429.75–104303.3, with μ ≈ 2.”7 yr⁻¹. Given that the prior list of confirmed and presumed Y dwarfs consists of just 27 objects, the Spitzer follow-up presented in this work has substantially expanded the sample of identified Y dwarfs. Our new discoveries thus represent significant progress toward understanding the bottom of the substellar mass function, investigating the diversity of the Y dwarf population, and selecting optimal brown dwarf targets for James Webb Space Telescope spectroscopy

    The CatWISE Preliminary Catalog: Motions from WISE{\it WISE} and NEOWISE{\it NEOWISE} Data

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    CatWISE is a program to catalog sources selected from combined WISE{\it WISE} and NEOWISE{\it NEOWISE} all-sky survey data at 3.4 and 4.6 μ\mum (W1 and W2). The CatWISE Preliminary Catalog consists of 900,849,014 sources measured in data collected from 2010 to 2016. This dataset represents four times as many exposures and spans over ten times as large a time baseline as that used for the AllWISE Catalog. CatWISE adapts AllWISE software to measure the sources in coadded images created from six-month subsets of these data, each representing one coverage of the inertial sky, or epoch. The catalog includes the measured motion of sources in 8 epochs over the 6.5 year span of the data. From comparison to Spitzer{\it Spitzer}, the SNR=5 limits in magnitudes in the Vega system are W1=17.67 and W2=16.47, compared to W1=16.96 and W2=16.02 for AllWISE. From comparison to Gaia{\it Gaia}, CatWISE positions have typical accuracies of 50 mas for stars at W1=10 mag and 275 mas for stars at W1=15.5 mag. Proper motions have typical accuracies of 10 mas yr1^{-1} and 30 mas yr1^{-1} for stars with these brightnesses, an order of magnitude better than from AllWISE. The catalog is available in the WISE/NEOWISE Enhanced and Contributed Products area of the NASA/IPAC Infrared Science Archive.Comment: 53 pages, 20 figures, 5 tables. Accepted by ApJ

    The CatWISE2020 Catalog

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    The CatWISE2020 Catalog consists of 1,890,715,640 sources over the entire sky selected from WISE and NEOWISE survey data at 3.4 and 4.6 μ\mum (W1 and W2) collected from 2010 Jan. 7 to 2018 Dec. 13. This dataset adds two years to that used for the CatWISE Preliminary Catalog (Eisenhardt et al., 2020), bringing the total to six times as many exposures spanning over sixteen times as large a time baseline as the AllWISE catalog. The other major change from the CatWISE Preliminary Catalog is that the detection list for the CatWISE2020 Catalog was generated using crowdsource{\it crowdsource} (Schlafly et al. 2019), while the CatWISE Preliminary Catalog used the detection software used for AllWISE. These two factors result in roughly twice as many sources in the CatWISE2020 Catalog. The scatter with respect to Spitzer{\it Spitzer} photometry at faint magnitudes in the COSMOS field, which is out of the Galactic plane and at low ecliptic latitude (corresponding to lower WISE coverage depth) is similar to that for the CatWISE Preliminary Catalog. The 90% completeness depth for the CatWISE2020 Catalog is at W1=17.7 mag and W2=17.5 mag, 1.7 mag deeper than in the CatWISE Preliminary Catalog. From comparison to Gaia{\it Gaia}, CatWISE2020 motions are accurate at the 20 mas yr1^{-1} level for W1\sim15 mag sources, and at the 100\sim100 mas yr1^{-1} level for W1\sim17 mag sources. This level of precision represents a 12×\times improvement over AllWISE. The CatWISE catalogs are available in the WISE/NEOWISE Enhanced and Contributed Products area of the NASA/IPAC Infrared Science Archive.Comment: 27 pages, 24 figure, 2 tables. Accepted for publication in ApJS. arXiv admin note: text overlap with arXiv:1908.0890
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