4,004 research outputs found
The Chemical and Dynamical Evolution of Isolated Dwarf Galaxies
Using a suite of simulations (Governato et al. 2010) which successfully
produce bulgeless (dwarf) disk galaxies, we provide an analysis of their
associated cold interstellar media (ISM) and stellar chemical abundance
patterns. A preliminary comparison with observations is undertaken, in order to
assess whether the properties of the cold gas and chemistry of the stellar
components are recovered successfully. To this end, we have extracted the
radial and vertical gas density profiles, neutral hydrogen velocity dispersion,
and the power spectrum of structure within the ISM. We complement this analysis
of the cold gas with a brief examination of the simulations' metallicity
distribution functions and the distribution of alpha-elements-to-iron.Comment: To appear in the proceedings of the JENAM 2010 Symposium "Dwarf
Galaxies: Keys to Galaxy Formation and Evolution" (Lisbon, 9-10 September
2010), P. Papaderos, S. Recchi, G. Hensler (eds.), Springer Verlag (2011), in
pres
Effective Field Theory for Few-Nucleon Systems
We review the effective field theories (EFTs) developed for few-nucleon
systems. These EFTs are controlled expansions in momenta, where certain
(leading-order) interactions are summed to all orders. At low energies, an EFT
with only contact interactions allows a detailed analysis of renormalization in
a non-perturbative context and uncovers novel asymptotic behavior. Manifestly
model-independent calculations can be carried out to high orders, leading to
high precision. At higher energies, an EFT that includes pion fields justifies
and extends the traditional framework of phenomenological potentials. The
correct treatment of QCD symmetries ensures a connection with lattice QCD.
Several tests and prospects of these EFTs are discussed.Comment: 55 pages, 18 figures, to appear in Ann. Rev. Nucl. Part. Sci. 52
(2002
Pharmacokinetic Characterisation and Comparison of Bioavailability of Intranasal Fentanyl, Transmucosal, and Intravenous Administration through a Three-Way Crossover Study in 24 Healthy Volunteers
Background. For more than 60 years, the synthetic opioid fentanyl has been widely used in anaesthesia and analgesia. While the intravenous formulation is primarily used for general anaesthesia and intensive care settings, the drug’s high lipophilic properties also allow various noninvasive routes of administration. Published data suggest that intranasal administration is also attractive for use as intranasal patient-controlled analgesia (PCA). A newly developed intranasal fentanyl formulation containing 47 μg fentanyl, intravenous fentanyl, and oral transmucosal fentanyl citrate were characterised, and bioavailability was compared to assess the suitability of the intranasal formulation for an intranasal PCA product. Methods. 27 healthy volunteers were enrolled in a single-centre, open-label, randomised (order of treatments), single-dose study in a three-period crossover design. The pharmacokinetics of one intranasal puff of fentanyl formulation (47 μg, 140 mL per puff), one short intravenous infusion of 50 μg fentanyl, and one lozenge with an integrated applicator (200 μg fentanyl) were studied, and bioavailability was calculated. Blood samples were collected over 12 hours, and plasma concentrations of fentanyl were determined by HPLC with MS/MS detection. Results. 24 volunteers completed the study. The geometric mean of AUC0-tlast was the highest with oral transmucosal administration (1106 h pg/ml, CV% = 32.86), followed by intravenous (672 h pg/ml, CV% = 32.18) and intranasal administration (515 h pg/ml, CV% = 30.10). Cmax was 886 pg/ml (CV% = 59.38) for intravenous, 338 pg/ml (CV% = 45.61) for intranasal, and 310 pg/ml (CV% = 29.58) for oral transmucosal administration. tmax was shortest for intravenous administration (0.06 h, SD = 0.056), followed by intranasal (0.21 h, SD = 0.078) and oral transmucosal administration (1.20 h, SD = 0.763). Dose-adjusted absolute bioavailability was determined to be 74.70% for the intranasal formulation and 41.25% for the oral transmucosal product. In total, 38 adverse events (AEs) occurred. Fourteen AEs were potentially related to the investigational items. No serious AE occurred. Conclusion. Pharmacokinetic parameters and bioavailability of the investigated intranasal fentanyl indicated suitability for its intended use as an intranasal PCA option
Transferability of Deep Learning Algorithms for Malignancy Detection in Confocal Laser Endomicroscopy Images from Different Anatomical Locations of the Upper Gastrointestinal Tract
Squamous Cell Carcinoma (SCC) is the most common cancer type of the
epithelium and is often detected at a late stage. Besides invasive diagnosis of
SCC by means of biopsy and histo-pathologic assessment, Confocal Laser
Endomicroscopy (CLE) has emerged as noninvasive method that was successfully
used to diagnose SCC in vivo. For interpretation of CLE images, however,
extensive training is required, which limits its applicability and use in
clinical practice of the method. To aid diagnosis of SCC in a broader scope,
automatic detection methods have been proposed. This work compares two methods
with regard to their applicability in a transfer learning sense, i.e. training
on one tissue type (from one clinical team) and applying the learnt
classification system to another entity (different anatomy, different clinical
team). Besides a previously proposed, patch-based method based on convolutional
neural networks, a novel classification method on image level (based on a
pre-trained Inception V.3 network with dedicated preprocessing and
interpretation of class activation maps) is proposed and evaluated. The newly
presented approach improves recognition performance, yielding accuracies of
91.63% on the first data set (oral cavity) and 92.63% on a joint data set. The
generalization from oral cavity to the second data set (vocal folds) lead to
similar area-under-the-ROC curve values than a direct training on the vocal
folds data set, indicating good generalization.Comment: Erratum for version 1, correcting the number of CLE image sequences
used in one data se
Complex exon-intron marking by histone modifications is not determined solely by nucleosome distribution
It has recently been shown that nucleosome distribution, histone modifications and RNA polymerase II (Pol II) occupancy show preferential association with exons (“exon-intron marking”), linking chromatin structure and function to co-transcriptional splicing in a variety of eukaryotes. Previous ChIP-sequencing studies suggested that these marking patterns reflect the nucleosomal landscape. By analyzing ChIP-chip datasets across the human genome in three cell types, we have found that this marking system is far more complex than previously observed. We show here that a range of histone modifications and Pol II are preferentially associated with exons. However, there is noticeable cell-type specificity in the degree of exon marking by histone modifications and, surprisingly, this is also reflected in some histone modifications patterns showing biases towards introns. Exon-intron marking is laid down in the absence of transcription on silent genes, with some marking biases changing or becoming reversed for genes expressed at different levels. Furthermore, the relationship of this marking system with splicing is not simple, with only some histone modifications reflecting exon usage/inclusion, while others mirror patterns of exon exclusion. By examining nucleosomal distributions in all three cell types, we demonstrate that these histone modification patterns cannot solely be accounted for by differences in nucleosome levels between exons and introns. In addition, because of inherent differences between ChIP-chip array and ChIP-sequencing approaches, these platforms report different nucleosome distribution patterns across the human genome. Our findings confound existing views and point to active cellular mechanisms which dynamically regulate histone modification levels and account for exon-intron marking. We believe that these histone modification patterns provide links between chromatin accessibility, Pol II movement and co-transcriptional splicing
Integrated information increases with fitness in the evolution of animats
One of the hallmarks of biological organisms is their ability to integrate
disparate information sources to optimize their behavior in complex
environments. How this capability can be quantified and related to the
functional complexity of an organism remains a challenging problem, in
particular since organismal functional complexity is not well-defined. We
present here several candidate measures that quantify information and
integration, and study their dependence on fitness as an artificial agent
("animat") evolves over thousands of generations to solve a navigation task in
a simple, simulated environment. We compare the ability of these measures to
predict high fitness with more conventional information-theoretic processing
measures. As the animat adapts by increasing its "fit" to the world,
information integration and processing increase commensurately along the
evolutionary line of descent. We suggest that the correlation of fitness with
information integration and with processing measures implies that high fitness
requires both information processing as well as integration, but that
information integration may be a better measure when the task requires memory.
A correlation of measures of information integration (but also information
processing) and fitness strongly suggests that these measures reflect the
functional complexity of the animat, and that such measures can be used to
quantify functional complexity even in the absence of fitness data.Comment: 27 pages, 8 figures, one supplementary figure. Three supplementary
video files available on request. Version commensurate with published text in
PLoS Comput. Bio
Salience-based selection: attentional capture by distractors less salient than the target
Current accounts of attentional capture predict the most salient stimulus to be invariably selected first. However, existing salience and visual search models assume noise in the map computation or selection process. Consequently, they predict the first selection to be stochastically dependent on salience, implying that attention could even be captured first by the second most salient (instead of the most salient) stimulus in the field. Yet, capture by less salient distractors has not been reported and salience-based selection accounts claim that the distractor has to be more salient in order to capture attention. We tested this prediction using an empirical and modeling approach of the visual search distractor paradigm. For the empirical part, we manipulated salience of target and distractor parametrically and measured reaction time interference when a distractor was present compared to absent. Reaction time interference was strongly correlated with distractor salience relative to the target. Moreover, even distractors less salient than the target captured attention, as measured by reaction time interference and oculomotor capture. In the modeling part, we simulated first selection in the distractor paradigm using behavioral measures of salience and considering the time course of selection including noise. We were able to replicate the result pattern we obtained in the empirical part. We conclude that each salience value follows a specific selection time distribution and attentional capture occurs when the selection time distributions of target and distractor overlap. Hence, selection is stochastic in nature and attentional capture occurs with a certain probability depending on relative salience
Dynamics of direct inter-pack encounters in endangered African wild dogs
Aggressive encounters may have important life history consequences due to the potential for injury and death, disease transmission, dispersal opportunities or exclusion from key areas of the home range. Despite this, little is known of their detailed dynamics, mainly due to the difficulties of directly observing encounters in detail. Here, we describe detailed spatial dynamics of inter-pack encounters in African wild dogs (Lycaon pictus), using data from custom-built high-resolution GPS collars in 11 free-ranging packs. On average, each pack encountered another pack approximately every 7 weeks and met each neighbour twice each year. Surprisingly, intruders were more likely to win encounters (winning 78.6% of encounters by remaining closer to the site in the short term). However, intruders did tend to move farther than residents toward their own range core in the short-term (1 h) post-encounter, and if this were used to indicate losing an encounter, then the majority (73.3%) of encounters were won by residents. Surprisingly, relative pack size had little effect on encounter outcome, and injuries were rare (<15% of encounters). These results highlight the difficulty of remotely scoring encounters involving mobile participants away from static defendable food resources. Although inter-pack range overlap was reduced following an encounter, encounter outcome did not seem to drive this, as both packs shifted their ranges post-encounter. Our results indicate that inter-pack encounters may be lower risk than previously suggested and do not appear to influence long-term movement and ranging
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