A Cellular automaton model for crowd movement and egress simulation

Ein Zellularautomatenmodell zur Simulation von Fußgängerbewegung und Evakuierungen The movement of crowds is a field of research that attracts increasing interest. This is due to three major reasons: pattern formation and selforganization processes that occur in crowd dynamics, the advancement of simulation techniques, and its applications (planning of pedestrian facilities, crowd management, or evacuation analysis). In this thesis, a model for simulating crowd movement is developed and its characteristics investigated and compared to alternative approaches. Additionally, simulations of the evacuation of aircraft, buildings, and ships is presented

Soil morphology, depth and grapevine root frequency influence microbial communities in a Pinot noir vineyard

The composition of microbial communities responds to soil resource availability, and has been shown to vary with increasing depth in the soil profile. Soil microorganisms partly rely on root-derived carbon (C) for growth and activity. Roots in woody perennial systems like vineyards have a deeper vertical distribution than grasslands and annual agriculture. Thus, we hypothesized that vineyard soil microbial communities along a vertical soil profile would differ from those observed in grassland and annual agricultural systems. In a Pinot noir vineyard, soil pits were excavated to ca. 1.6–2.5m, and microbial community composition in ‘bulk’ (i.e., no roots) and ‘root’ (i.e., roots present) soil was described by phospholipid ester-linked fatty acids (PLFA). Utilization of soil taxonomy aided in understanding relationships between soil microbial communities, soil resources and other physical and chemical characteristics. Soil microbial communities in the Ap horizon were similar to each other, but greater variation in microbial communities was observed among the lower horizons. Soil resources (i.e., total PLFA, or labile C, soil C and nitrogen, and exchangeable potassium) were enriched in the surface horizons and significantly explained the distribution of soil microbial communities with depth. Soil chemical properties represented the secondary gradient explaining the differentiation between microbial communities in the B-horizons from the C-horizons. Relative abundance of Gram-positive bacteria and actinomycetes did not vary with depth, but were enriched in ‘root’ vs. ‘bulk’ soils. Fungal biomarkers increased with increasing depth in ‘root’ soils, differing from previous studies in grasslands and annual agricultural systems. This was dependent on the deep distribution of roots in the vineyard soil profile, suggesting that the distinct pattern in PLFA biomarkers may have been strongly affected by C derived from the grapevine roots. Gram-negative bacteria did not increase in concert with fungal abundance, suggesting that acidic pHs in lower soil horizons may have discouraged their growth. These results emphasize the importance of considering soil morphology and associated soil characteristics when investigating effects of depth and roots on soil microorganisms, and suggest that vineyard management practices and deep grapevine root distribution combine to cultivate a unique microbial community in these soil profiles

Volatile organic compounds (VOCs) in photochemically aged air from the Eastern and Western Mediterranean

Meeting Poster abstract given at EGU general assembly 2015.In summer 2014 a comprehensively instrumented measurement campaign (CYPHEX) was conducted in northwest Cyprus in order to investigate atmospheric oxidation chemistry in the Mediterranean region. The site was periodically influenced by the northerly Etesian winds advecting air from Eastern Europe (Turkey and Greece) and from westerly winds bringing more photochemically processed emissions from Western Europe (Spain and France). In this study the data from a Proton Transfer Reaction Time of Flight Mass Spectrometer (PTR-TOF-MS) are analyzed. Generally, oxidized volatile organic compounds (OVOCs) such as methanol and acetone were measured in high mixing ratios (max. 9.5 ppb, min. 1.3 ppb, average 3.2 ppb for methanol, max. 7.9 ppb, min. 1.3 ppb, average 2.4 ppb for acetone ) while precursors like propane showed low values (max. 500 ppt). This demonstrates that the air measured was oxidized to a high degree over the Mediterranean Sea. Low values of acetonitrile throughout the campaign indicated no significant influence of biomass burning on the data. Temporal variations in VOC mixing ratios and precursor/product ratios over the campaign can be explained by using the HYSPLIT backward trajectory model which delineated air masses originating from Eastern and Western Europe. Diel variations of reactive VOCs such as isoprene and terpenes were also observed at the site. A sharp increase in isoprene and monoterpenes at circa 9:00 local time indicated that the 600 m hilltop site was influenced by ascending boundary layer air at this time. In this study, particular emphasis is placed on acetic (ethanoic) acid measured by PTR- TOF-MS and calibrated by a permeation source. Acetic acid is an atmospheric oxidation product of multiple volatile organic compounds, emitted directly from vegetation, and found in abundance in the Mediterranean region (max. 2.7 ppb, min. 0.2 ppb, average 0.8 ppb). Acetic acid contributes to the acidity of precipitation in remote areas, can be incorporated into aerosols by adsorption on the surface and thereby alter the activity due to their high polarity. Correlations of acetic acid with peracetic acid, humidity and ozone have been investigated in order to better understand the sources influencing acetic acid at the site and to assess its potential as a marker for Criegee radical chemistry.Max Planck Societ

Shifts in Soil Bacterial Communities as a Function of Carbon Source Used During Anaerobic Soil Disinfestation

Anaerobic soil disinfestation (ASD) is an organic amendment-based management practice for controlling soil-borne plant pathogens. Pathogen suppression appears to be carbon source-dependent and mediated by bacteria that proliferate and produce volatile organic compounds, as well as physico-chemical changes (i.e., elevated temperature, lowered redox potential and pH, release of metal ions) in soil. ASD is under study for adoption in tree crops as a replacement for chemical-fumigation, but its widespread use is limited by incomplete understanding of its suppression mechanisms and high economic costs. The carbon substrate is one component of the ASD process that can be optimized to enhance effectiveness and affordability. While rice bran is currently the standard carbon source used for ASD, we identified three alternative substrates (molasses, mustard seed meal, and tomato pomace) that are similar in efficacy to rice bran at generating and sustaining soil anoxia and reducing populations of introduced plant pathogens. Here, we used replicated ASD field trials to determine if rice bran and the alternative carbon substrates would elicit similar soil bacterial communities (characterized via amplicon sequencing of the 16S rRNA gene v4 region) and to assess if any observed community shifts were consistent across repeated trials. We found significant, but minimal differences in community composition between ASD carbon treatments (F4, 30 = 2.80, P < 0.001, R2 = 0.22) and trials (F1, 30 = 5.24, P < 0.001, R2 = 0.10). In both trials, the abundances of Bacteroidales, Clostridiales, Selenomonadales, and Enterobacteriales increased significantly (>5 log2 fold change) in all ASD treatments compared to untreated controls. A group of shared core genera belonging to the Clostridiales and Selenomonadales were identified in both trials and constituted 22.6 and 21.5% of the communities. Bacterial taxa that were most responsive to ASD treatments had the genomic potential for denitrification, nitrogen fixation, and fermentation reactions that produce organic acids (such as acetate and butyrate) known to inhibit in vitro growth of plant pathogens based on predicted metagenomes. Together, these results indicate that reproducible and effective implementation of ASD is achievable with alternative carbon substrates to rice bran

Site-directed mutagenesis of conserved inverted repeat sequences in the xylanase C promoter region from Streptomyces sp EC3

Streptomyces sp. EC3, a strain which was originally isolated from cattle manure compost, was shown to possess a strong xylanolytic activity. One of the genes responsible for this activity, xlnC, encodes a secreted xylanase. In the native strain, as in the heterologous host S. lividans, expression of xlnC was detectable in the presence of xylan but not in the presence of glucose. Induction by xylan was shown to take place at the transcriptional level. The transcriptional start site of xlnC was mapped and likely -35 (5'-TTGACA-3') and -10 (5'-GAGAAC-3') motifs were identified. In order to localise putative conserved regulatory sequences, the promoter regions of xylanase-encoding genes from various Streptomyces species were aligned. This alignment revealed the existence of three sets of quite well conserved palindromic AT rich sequences called boxes 1, 2 and 3. Box 3 (5'-CGAAA N TTTCG-3') is the farthest away from the promoter region (150-200 bp). A shorter version of this palindrome (5'-GAAA NN TTTC-3') or (5'-CGAAA-3') constitutes box 1, which is located just upstream of the putative -35 promoter sequence. Box 2, located 5-7 bp upstream of box 1, comprises a shorter palindrome than box 3, with inverted polarity [5'-(G/C)TTTC (N) GAAA(G/C)-3']. The putative regulatory role of the conserved inverted repeats in boxes 2 and 3 in the promoter region of the xlnC gene from Streptomyces sp. EC3, was assessed. These boxes were modified by site-directed mutagenesis, and the mutant promoter regions, as well as the wild-type promoter region, were separately fused to a beta-lactamase reporter gene. Analysis of the expression patterns of these fusions in cultures grown in the presence of glucose, xylan or both carbon sources demonstrated that these motifs were cis -acting negative regulatory elements, each playing a specific role in the regulation of xlnC expression. Box 3 was shown to be critical for the establishment of repression of xlnC expression by glucose, whereas box 2 was shown to play an important role in the induction of xlnC expression by xylan.Peer reviewe