63 research outputs found
Majority versus minority dynamics: Phase transition in an interacting two-state spin system
We introduce a simple model of opinion dynamics in which binary-state agents
evolve due to the influence of agents in a local neighborhood. In a single
update step, a fixed-size group is defined and all agents in the group adopt
the state of the local majority with probability p or that of the local
minority with probability 1-p. For group size G=3, there is a phase transition
at p_c=2/3 in all spatial dimensions. For p>p_c, the global majority quickly
predominates, while for p<p_c, the system is driven to a mixed state in which
the densities of agents in each state are equal. For p=p_c, the average
magnetization (the difference in the density of agents in the two states) is
conserved and the system obeys classical voter model dynamics. In one dimension
and within a Kirkwood decoupling scheme, the final magnetization in a
finite-length system has a non-trivial dependence on the initial magnetization
for all p.ne.p_c, in agreement with numerical results. At p_c, the exact 2-spin
correlation functions decay algebraically toward the value 1 and the system
coarsens as in the classical voter model.Comment: 11 pages, 3 figures, revtex4 2-column format; minor revisions for
publication in PR
Defects and glassy dynamics in solid He-4: Perspectives and current status
We review the anomalous behavior of solid He-4 at low temperatures with
particular attention to the role of structural defects present in solid. The
discussion centers around the possible role of two level systems and structural
glassy components for inducing the observed anomalies. We propose that the
origin of glassy behavior is due to the dynamics of defects like dislocations
formed in He-4. Within the developed framework of glassy components in a solid,
we give a summary of the results and predictions for the effects that cover the
mechanical, thermodynamic, viscoelastic, and electro-elastic contributions of
the glassy response of solid He-4. Our proposed glass model for solid He-4 has
several implications: (1) The anomalous properties of He-4 can be accounted for
by allowing defects to freeze out at lowest temperatures. The dynamics of solid
He-4 is governed by glasslike (glassy) relaxation processes and the
distribution of relaxation times varies significantly between different
torsional oscillator, shear modulus, and dielectric function experiments. (2)
Any defect freeze-out will be accompanied by thermodynamic signatures
consistent with entropy contributions from defects. It follows that such
entropy contribution is much smaller than the required superfluid fraction, yet
it is sufficient to account for excess entropy at lowest temperatures. (3) We
predict a Cole-Cole type relation between the real and imaginary part of the
response functions for rotational and planar shear that is occurring due to the
dynamics of defects. Similar results apply for other response functions. (4)
Using the framework of glassy dynamics, we predict low-frequency yet to be
measured electro-elastic features in defect rich He-4 crystals. These
predictions allow one to directly test the ideas and very presence of glassy
contributions in He-4.Comment: 33 pages, 13 figure
In-vivo T-cell depleted reduced-intensity conditioned allogeneic haematopoietic stem-cell transplantation for patients with acute lymphoblastic leukaemia in first remission: results from the prospective, single-arm evaluation of the UKALL14 trial
Background
The outcome of chemotherapy in patients older than 40 years with acute lymphoblastic leukaemia is poor and myeloablative allogeneic haematopoietic stem-cell transplantation (HSCT) has a high transplant-related mortality (TRM) in this age cohort. The aim of this study was to assess the activity and safety of reduced-intensity conditioned allogeneic HSCT in this patient population.
Methods
This was a single-arm, prospective study within the UKALL14 trial done in 46 centres in the UK, which recruited patients to the transplantation substudy. Participants in UKALL14 had B-cell or T-cell acute lymphoblastic leukaemia, were aged 25â65 years (BCR-ABL1-negative) or 18â65 years (BCR-ABL1-positive), and for this subcohort had a fit, matched sibling donor or an 8 out of 8 allelic matched unrelated donor (HLA-A, HLA-B, HLA-C, and HLA-DR). On June 20, 2014, the protocol was amended to allow 7 out of 8 matched unrelated donors if the patient had high risk cytogenetics or was minimal residual disease (MRD)-positive after the second induction course. Patients were given fludarabine, melphalan, and alemtuzumab (FMA; intravenous fludarabine 30 mg/m2 on days â6 to â2, melphalan 140 mg/m2 on day â2, and alemtuzumab 30 mg on day â1 [sibling donor] and days â2 and â1 [unrelated donor]) before allogeneic HSCT (aged â„41 years patient pathway). Donor lymphocyte infusions were given from 6 months for mixed chimerism or MRD. The primary endpoint was event-free survival and secondary and transplantation-specific endpoints included overall survival, relapse incidence, TRM, and acute and chronic graft-versus-host disease (GVHD). This study is registered with ClinicalTrials.gov, NCT01085617.
Findings
From Feb 22, 2011, to July 26, 2018, 249 patients (236 aged â„41 years and 13 younger than 41 years) considered unfit for a myeloablative allograft received an FMA reduced-intensity conditioned HSCT. 138 (55%) patients were male and 111 (45%) were female. 88 (35%) participants received transplantations from a sibling donor and 160 (64%) received transplantations from unrelated donors. 211 (85%) participants had B-precursor acute lymphoblastic leukaemia. High-risk cytogenetics were present in 43 (22%) and another 63 (25%) participants were BCR-ABL1-positive. At median follow-up of 49 months (IQR 36â70), 4-year event-free survival was 46·8% (95% CI 40·1â53·2) and 4-year overall survival was 54·8% (48·0â61·2). 4-year cumulative incidence of relapse was 33·6% (27·9â40·2) and 4-year TRM was 19·6% (15·1â25·3). 27 (56%) of 48 patients with TRM had infection as the named cause of death. Seven (15%) of 48 patients had fungal infections, 13 (27%) patients had bacterial infections (six gram-negative), and 11 (23%) had viral infections (three cytomegalovirus and two Epstein-Barr virus). Acute GVHD grade 2â4 occurred in 29 (12%) of 247 patients and grade 3â4 occurred in 12 (5%) patients. Chronic GVHD incidence was 84 (37%) of 228 patients (50 [22%] had extensive chronic GVHD). 49 (30%) of 162 patients had detectable end-of-induction MRD, which portended worse outcomes with event-free survival (HR 2·40 [95% CI 1·46â3·93]) and time-to-relapse (HR 2·41 [1·29â4·48]).
Interpretation
FMA reduced-intensity conditioned allogeneic HSCT in older patients with acute lymphoblastic leukaemia in first complete remission provided good disease control with moderate GVHD, resulting in better-than-expected event-free survival and overall survival in this high-risk population. Strategies to reduce infection-related TRM will further improve outcomes.
Funding
Cancer Research UK
Genetic and genomic analysis of acute lymphoblastic leukaemia in older adults reveals a distinct profile of abnormalities: analysis of 210 patients from the UKALL14 and UKALL60+ clinical trials
Despite being predominantly a childhood disease, the incidence of ALL has a second peak in adults aged 60 years and over. These older adults fare extremely poorly with existing treatment strategies and very few studies have undertaken a comprehensive genetic and genomic characterisation to improve prognosis in this age group.
We performed cytogenetic, single nucleotide polymorphism (SNP) array and next generation sequencing (NGS) analyses on samples from 210 patients aged â„60 years from the UKALL14 and UKALL60+ clinical trials. BCR-ABL1 positive disease was present in 26% (55/210) of patients, followed by low hypodiploidy/near triploidy in 13% (28/210). Cytogenetically cryptic rearrangements in CRLF2, ZNF384 and MEF2D were detected in 5%, 1% and 1% of patients respectively. Copy number abnormalities were common and deletions in ALL driver genes were seen in 77% of cases. IKZF1 deletion was present in 51% (40/78) of samples tested and the IKZF1plus profile identified in over a third (28/77) of BCP-ALL cases. The genetic good risk abnormalities high hyperdiploidy (n=2), ETV6-RUNX1 (no cases) and ERG deletion (no cases) were exceptionally rare in this cohort. RAS pathway mutations were seen in 17% (4/23) of screened samples. KDM6A abnormalities, including biallelic deletions, were discovered in 5% (4/78) of SNP array and 9% (2/23) of NGS samples, and represent a novel, potentially therapeutically actionable lesions using EZH2 inhibitors.
Outcome remained poor with five-year event-free (EFS) and overall survival (OS) rates of 17% and 24% respectively across the cohort indicating a need for novel therapeutic strategies
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Energetic particle influence on the Earth's atmosphere
This manuscript gives an up-to-date and comprehensive overview of the effects of energetic particle precipitation (EPP) onto the whole atmosphere, from the lower thermosphere/mesosphere through the stratosphere and troposphere, to the surface. The paper summarizes the different sources and energies of particles, principally
galactic cosmic rays (GCRs), solar energetic particles (SEPs) and energetic electron precipitation (EEP). All the proposed mechanisms by which EPP can affect the atmosphere
are discussed, including chemical changes in the upper atmosphere and lower thermosphere, chemistry-dynamics feedbacks, the global electric circuit and cloud formation. The role of energetic particles in Earthâs atmosphere is a multi-disciplinary problem that requires expertise from a range of scientific backgrounds. To assist with this synergy, summary tables are provided, which are intended to evaluate the level of current knowledge of the effects of energetic particles on processes in the entire atmosphere
IFN-α in the treatment of melanoma
Among the IFNs, IFN-α2 has been the most broadly evaluated clinically. At the molecular level, IFN-α has multiple effects in a variety of malignancies that range from antiangiogenic to potent immunoregulatory, differentiation-inducing, antiproliferative, and proapoptotic effects. A multitude of IFN-α2 regimens that may be classified as low dose, intermediate dose, and high dose have been evaluated as adjuvant therapy in melanoma. A durable impact on both relapse-free and overall survival was seen only with the regimen utilizing high-dose IFN-α2b tested in the Eastern Cooperative Oncology Group and intergroup trials E1684, E1690, and E1694 as adjuvant therapy for high-risk surgically resected melanoma (stage IIB or III). Adjuvant pegylated IFN-α2b has also been evaluated at maximally tolerable doses compared with the observation group in the European Organization for Research and Treatment of Cancer trial 18991 and has shown relapse-free survival benefits in patients with microscopic nodal disease. Copyright © 2012 by The American Association of Immunologists, Inc
Stock assessment and the provision of management advice for the short fin squid fishery in Falkland Islands waters
The scientific basis for managing the short fin squid, Illex argentinus, Stock around the Falkland Islands is presented. A target proportional escapement policy is used which permits a level of fishing effort compatible with conservation targets to be set each year. This policy is intimately related to the method of assessing stock size and the rate of fishing mortality presented in a related paper.
The results of applying this management procedure for the 1987 and 1988 fishing seasons, the first 2 years of regulated fishing in Falkland Islands waters, are described. The policy has the considerable benefit that the data requirements and monitoring procedures are straightforward, and can be implemented by the limited manpower resources of the islands
The assessment of stocks of annual squid species
Methodology for assessing squid fisheries is presented focusing on the estimation of exploitation rate, stock size and the fishing power of the vessels. The assessment is designed to provide input into management decisions for effort limited fisheries. The fishery for Illex argentinus around the Falkland Islands is used as an example for the methods. The development of a management policy for this fishery is described more fully in a related paper.
The methods are based on modifications to standard Leslie-Delury analysis. Various regression methods are utilized depending on the number of fleets for which detailed data are available. The statistical procedures also yield estimates of the standard errors of the estimates for evaluating the assessment advice
Effect of dietary patterns on muscle strength and physical performance in the very old: findings from the Newcastle 85+ Study
BackgroundHealthy diet has been associated with better muscle strength and physical performance in cross-sectional studies of older adults but the effect of dietary patterns (DP) on subsequent decline, particularly in the very old (aged 85+), has not been determined.ObjectiveWe investigated the association between previously established DP and decline in muscle strength and physical performance in the very old.Design791 participants (61.8% women) from the Newcastle 85+ Study were followed-up for change in hand grip strength (HGS) and Timed Up-and Go (TUG) test over 5 years (four waves 1.5 years apart). Mixed models were used to determine the effects of DP on muscle strength and physical performance in the entire cohort and separately by sex.ResultsPreviously we have established three DP that varied in intake of red meats, potato, gravy and butter and differed with key health and social factors. HGS declined linearly by 1.59 kgF in men and 1.08 kgF in women (both pConclusionsDP high in red meats, potato and gravy (DP1), or butter (DP3) may adversely affect muscle strength and physical performance in later life, independently of important covariates and cognitive status
Initial level and rate of change in grip strength predict all-cause mortality in very old adults
Objectiveto investigate the associations between initial level and rate of change in grip strength (GS) and all-cause mortality in very old adults (â„85 years) over a 9.6-year follow-up.Methodsprospective mortality data from 845 participants in the Newcastle 85+ Study were analysed for survival in relation to GS (kg, baseline and 5-year mean change) using Cox proportional hazards models.Resultsduring the follow-up, 636 (75.3%) participants died. Higher baseline GS was associated with a decreased risk of mortality in all participants [hazard ratio (HR) = 0.95, 95% confidence interval (CI): 0.93â0.98, P < 0.001], men (HR = 0.97, 95% CI: 0.95â0.99, P = 0.009) and women (HR = 0.96, 95% CI: 0.94â0.99, P = 0.007) after adjustment for health, lifestyle and anthropometric factors. Overall GS slope had a downward trajectory and was determined in 602 participants: 451 experienced constant decline (negative slope) and 151 had increasing GS (positive slope) over time. Men and women with a negative slope had a 16 and 33% increased risk of mortality, respectively, with every kg/year decline in GS (P †0.005), and participants with a positive slope had a 31% decreased risk of mortality (P = 0.03) irrespective of baseline GS and key covariates.Conclusionhigher baseline GS and 5-year increase in GS were protective of mortality, whilst GS decline was associated with an increased risk of mortality in the very old over 9.6 years, especially in women. These results add to the biological and clinical importance of GS as a powerful predictor of long-term survival in late life.</p
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