Overcoming the data crisis in biodiversity conservation

How can we track population trends when monitoring data are sparse? Population declines can go undetected, despite ongoing threats. For example, only one of every 200 harvested species are monitored. This gap leads to uncertainty about the seriousness of declines and hampers effective conservation. Collecting more data is important, but we can also make better use of existing information. Prior knowledge of physiology, life history, and community ecology can be used to inform population models. Additionally, in multispecies models, information can be shared among taxa based on phylogenetic, spatial, or temporal proximity. By exploiting generalities across species that share evolutionary or ecological characteristics within Bayesian hierarchical models, we can fill crucial gaps in the assessment of species’ status with unparalleled quantitative rigor

Maximum Intrinsic Rate of Population Increase in Sharks, Rays, and Chimaeras: The Importance of Survival to Maturity

The maximum intrinsic rate of population increase rmax  is a commonly estimated demographic parameter used in assessments of extinction risk. In teleosts, rmax can be calculated using an estimate of spawners per spawner, but for chondrichthyans, most studies have used annual reproductive output b instead. This is problematic as it effectively assumes all juveniles survive to maturity. Here, we propose an updated rmax equation that uses a simple mortality estimator which also accounts for survival to  maturity: the reciprocal of average lifespan. For 94 chondrichthyans, we now estimate that rmax values are on average 10% lower than previously published. Our updated rmax estimates are lower than previously published for species that mature later relative to maximum age and those with high annual fecundity. The most extreme discrepancies in rmax values occur in species with low age at maturity and low annual reproductive output. Our results indicate that chondrichthyans that mature relatively later in life, and to a lesser extent those that are highly fecund, are less resilient to fishing than previously thought

Sharkipedia: Elasmobranch Traits and Trends Global Database

Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone. Originally inspired by FishBase, our databases are modelled after Coral Traits database and the RAM legacy database. The key aspects of our initiative were established with the central tenet of facilitating research on chondrichthyans, and are built on three main principles: (1) being completely web-based open- access and queryable for use by all researchers, (2) quality control and assurance by experts in the field and traceability of every measurement to its original references, and (3) regular updates association with International Union for the Conservation of Nature (IUCN) Red List Assessment workshops of focal species

Multispecies colour polymorphisms associated with contrasting microhabitats in two Mediterranean wrasse radiations.

Intraspecific colour polymorphisms (CPs) present unique opportunities to study fundamental evolutionary questions, such as the link between ecology and phenotype, mechanisms maintaining genetic diversity and their putative role in speciation. Wrasses are highly diverse in ecology and morphology and harbour a variety of colour-polymorphic species. In the Mediterranean Sea, wrasses of the tribe Labrini evolved two species radiations each harbouring several species with a brown and a green morph. The colour morphs occur in complete sympatry in mosaic habitats with rocky outcrops and Neptune grass patches. Morph-specific differences had not been characterized yet and the evolutionary forces maintaining them remained unknown. With genome-wide data for almost all Labrini species, we show that species with CPs are distributed across the phylogeny, but show evidence of hybridization. This suggests that the colour morphs are either ancient and have been lost repeatedly, that they have evolved repeatedly or have been shared via hybridization. Focusing on two polymorphic species, we find that each colour morph is more common in the microhabitat providing the best colour match and that the morphs exhibit additional behavioural and morphological differences further improving crypsis in their respective microhabitats. We find little evidence for genetic differentiation between the morphs in either species. Therefore, we propose that these colour morphs represent a multi-niche polymorphism as an adaptation to the highly heterogeneous habitat. Our study highlights how colour polymorphism (CP) can be advantageous in mosaic habitats and that Mediterranean wrasses are an ideal system to study trans-species polymorphisms, i.e. polymorphisms maintained across several species, in adaptive radiations

Multispecies colour polymorphisms associated with contrasting microhabitats in two Mediterranean wrasse radiations.

Intraspecific colour polymorphisms (CPs) present unique opportunities to study fundamental evolutionary questions, such as the link between ecology and phenotype, mechanisms maintaining genetic diversity and their putative role in speciation. Wrasses are highly diverse in ecology and morphology and harbour a variety of colour-polymorphic species. In the Mediterranean Sea, wrasses of the tribe Labrini evolved two species radiations each harbouring several species with a brown and a green morph. The colour morphs occur in complete sympatry in mosaic habitats with rocky outcrops and Neptune grass patches. Morph-specific differences had not been characterized yet and the evolutionary forces maintaining them remained unknown. With genome-wide data for almost all Labrini species, we show that species with CPs are distributed across the phylogeny, but show evidence of hybridization. This suggests that the colour morphs are either ancient and have been lost repeatedly, that they have evolved repeatedly or have been shared via hybridization. Focusing on two polymorphic species, we find that each colour morph is more common in the microhabitat providing the best colour match and that the morphs exhibit additional behavioural and morphological differences further improving crypsis in their respective microhabitats. We find little evidence for genetic differentiation between the morphs in either species. Therefore, we propose that these colour morphs represent a multi-niche polymorphism as an adaptation to the highly heterogeneous habitat. Our study highlights how colour polymorphism (CP) can be advantageous in mosaic habitats and that Mediterranean wrasses are an ideal system to study trans-species polymorphisms, i.e. polymorphisms maintained across several species, in adaptive radiations

Estimating IUCN Red List Population Reduction: JARA—A Decision-Support Tool Applied to Pelagic Sharks

The International Union for Conservation of Nature\u27s (IUCN) Red List is the global standard for quantifying extinction risk but assessing population reduction (criterion A) of wide‐ranging, long‐lived marine taxa remains difficult and controversial. We show how Bayesian state–space models (BSSM), coupled with expert knowledge at IUCN Red List workshops, can combine regional abundance data into indices of global population change. To illustrate our approach, we provide examples of the process to assess four circumglobal sharks with differing temporal and spatial data‐deficiency: Blue Shark (Prionace glauca), Shortfin Mako (Isurus oxyrinchus), Dusky Shark (Carcharhinus obscurus), and Great Hammerhead (Sphyrna mokarran). For each species, the BSSM provided global population change estimates over three generation lengths bounded by uncertainty levels in intuitive outputs, enabling informed decisions on the status of each species. Integrating similar analyses into future workshops would help conservation practitioners ensure robust, consistent, and transparent Red List assessments for other long‐lived, wide‐ranging species

Conservation successes and challenges for wide-ranging sharks and rays

Overfishing is the most significant threat facing sharks and rays. Given the growth in consumption of seafood, combined with the compounding effects of habitat loss, climate change, and pollution, there is a need to identify recovery paths, particularly in poorly managed and poorly monitored fisheries. Here, we document conservation through fisheries management success for 11 coastal sharks in US waters by comparing population trends through a Bayesian state-space model before and after the implementation of the 1993 Fisheries Management Plan for Sharks. We took advantage of the spatial and temporal gradients in fishing exposure and fisheries management in the Western Atlantic to analyze the effect on the Red List status of all 26 wide-ranging coastal sharks and rays. We show that extinction risk was greater where fishing pressure was higher, but this was offset by the strength of management engagement (indicated by strength of National and Regional Plan of Action for sharks and rays). The regional Red List Index (which tracks changes in extinction risk through time) declined in all regions until the 1980s but then improved in the North and Central Atlantic such that the average extinction risk is currently half that in the Southwest. Many sharks and rays are wide ranging, and successful fisheries management in one country can be undone by poorly regulated or unregulated fishing elsewhere. Our study underscores that well-enforced, science-based management of carefully monitored fisheries can achieve conservation success, even for slow-growing species

X. birchmanni life history data

Life history data from samples collected from wild populations of sheepshead swordtail, X. birchmanni, in Hidalgo, Mexico. NAs indicate missing data. Embryo staging was based on the methods described in Reznick DN, Endler JA. (1982) Evolution 86: 160-177, which in turn were based on the PhD thesis of SC Stearns. The embryo stage codes are as follows: VEE: Very early eyed EE: Early eyed LE: Late eyed VLE: Very late eye VY: Vitellogenic yol

Data from: Maternal size and age shape offspring size in a live-bearing fish, Xiphophorus birchmanni

Many studies of offspring size focus on differences in maternal investment that arise from ecological factors such as predation or competition. Classic theory predicts that these ecological factors will select for an optimal offspring size, and therefore that variation in a given environment will be minimized. Yet recent evidence suggests maternal traits such as size or age could also drive meaningful variation in offspring size. The generality of this pattern is unclear, as some studies suggest that it may represent non-adaptive variation or be an artifact of temporal or spatial differences in maternal environments. To clarify this pattern, we asked how maternal size, age and condition are related to each other in several populations of the swordtail Xiphophorus birchmanni. We then determined how these traits are related to offspring size, and whether they could resolve unexplained intra-population variation in this trait. We found that female size, age, and condition are correlated within populations; at some of these sites, older, larger females produce larger offspring than do younger females. The pattern was robust to differences among most, but not all, sites. Our results document a pattern that is consistent with recent theory predicting adaptive age- and size-dependence in maternal investment. Further work is needed to rule out non-adaptive explanations for this variation. Our results suggest that female size and age could play an under-appreciated role in population growth and evolution