Impact assessment for the improved four boundary conditions (at bed, free-surface, land-boundary and offshore-boundary) on coastal hydrodynamics and particulate transport

The FIELD_AC project aims at providing an improved operational service for coastal areas and at generating added value for shelf and regional scale predictions. Coastal-zone oceanographic predictions seldom appraise the land discharge as a boundary condition. River fluxes are sometimes considered, but neglecting their 3D character, while the "distributed" continental run-off is not taken into consideration. Moreover, many coastal scale processes, particularly those relevant in geographically restricted domains (coast with harbors or river mouth areas), are not well parametrized in present simulations.Work package 3 dedicated to Boundary Fluxes aims to establish and use the best possible boundary conditions for coastal water quality modelling. On this scale, all boundaries become important. For the land boundary side the needed products are distributed and point wise run-off both quantitatively and qualitatively. For the offshore boundary condition, 3D current, water quality field, and wave spectra will be used. For the atmospheric boundary, products from local scale meteorological models (wind, atmospheric pressure and rainfall) are needed. For the seabed, boundary information on sediment composition, bedforms and bathymetry and bio-geo-chemical parameters is essential.This report addresses the impact assessment for improvements in the four boundary conditions (boundary fluxes from land, free-surface boundary condition, seabed boundary condition and open boundary fluxes) on coastal hydrodynamics and particulate transport. The description of the improved four boundary conditions is followed by examples of concrete impact assessment of the theory into the Catalan coast, Liverpool Bay, German Bight and Gulf of Venice

Early onset of ground-state deformation in the neutron-deficient polonium isotopes

In-source resonant ionization laser spectroscopy of the even-$A$ polonium isotopes $^{192-210,216,218}$Po has been performed using the $6p^37s$ $^5S_2$ to $6p^37p$ $^5P_2$ ($\lambda=843.38$ nm) transition in the polonium atom (Po-I) at the CERN ISOLDE facility. The comparison of the measured isotope shifts in $^{200-210}$Po with a previous data set allows to test for the first time recent large-scale atomic calculations that are essential to extract the changes in the mean-square charge radius of the atomic nucleus. When going to lighter masses, a surprisingly large and early departure from sphericity is observed, which is only partly reproduced by Beyond Mean Field calculations.Comment: As submitted to PR

Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment

BACKGROUND: Given the high heterogeneity among breast tumors, associations between common germline genetic variants and survival that may exist within specific subgroups could go undetected in an unstratified set of breast cancer patients. METHODS: We performed genome-wide association analyses within 15 subgroups of breast cancer patients based on prognostic factors, including hormone receptors, tumor grade, age, and type of systemic treatment. Analyses were based on 91,686 female patients of European ancestry from the Breast Cancer Association Consortium, including 7531 breast cancer-specific deaths over a median follow-up of 8.1 years. Cox regression was used to assess associations of common germline variants with 15-year and 5-year breast cancer-specific survival. We assessed the probability of these associations being true positives via the Bayesian false discovery probability (BFDP < 0.15). RESULTS: Evidence of associations with breast cancer-specific survival was observed in three patient subgroups, with variant rs5934618 in patients with grade 3 tumors (15-year-hazard ratio (HR) [95% confidence interval (CI)] 1.32 [1.20, 1.45], P = 1.4E-08, BFDP = 0.01, per G allele); variant rs4679741 in patients with ER-positive tumors treated with endocrine therapy (15-year-HR [95% CI] 1.18 [1.11, 1.26], P = 1.6E-07, BFDP = 0.09, per G allele); variants rs1106333 (15-year-HR [95% CI] 1.68 [1.39,2.03], P = 5.6E-08, BFDP = 0.12, per A allele) and rs78754389 (5-year-HR [95% CI] 1.79 [1.46,2.20], P = 1.7E-08, BFDP = 0.07, per A allele), in patients with ER-negative tumors treated with chemotherapy. CONCLUSIONS: We found evidence of four loci associated with breast cancer-specific survival within three patient subgroups. There was limited evidence for the existence of associations in other patient subgroups. However, the power for many subgroups is limited due to the low number of events. Even so, our results suggest that the impact of common germline genetic variants on breast cancer-specific survival might be limited

Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment

BACKGROUND: Given the high heterogeneity among breast tumors, associations between common germline genetic variants and survival that may exist within specific subgroups could go undetected in an unstratified set of breast cancer patients. METHODS: We performed genome-wide association analyses within 15 subgroups of breast cancer patients based on prognostic factors, including hormone receptors, tumor grade, age, and type of systemic treatment. Analyses were based on 91,686 female patients of European ancestry from the Breast Cancer Association Consortium, including 7531 breast cancer-specific deaths over a median follow-up of 8.1 years. Cox regression was used to assess associations of common germline variants with 15-year and 5-year breast cancer-specific survival. We assessed the probability of these associations being true positives via the Bayesian false discovery probability (BFDP &lt; 0.15). RESULTS: Evidence of associations with breast cancer-specific survival was observed in three patient subgroups, with variant rs5934618 in patients with grade 3 tumors (15-year-hazard ratio (HR) [95% confidence interval (CI)] 1.32 [1.20, 1.45], P = 1.4E-08, BFDP = 0.01, per G allele); variant rs4679741 in patients with ER-positive tumors treated with endocrine therapy (15-year-HR [95% CI] 1.18 [1.11, 1.26], P = 1.6E-07, BFDP = 0.09, per G allele); variants rs1106333 (15-year-HR [95% CI] 1.68 [1.39,2.03], P = 5.6E-08, BFDP = 0.12, per A allele) and rs78754389 (5-year-HR [95% CI] 1.79 [1.46,2.20], P = 1.7E-08, BFDP = 0.07, per A allele), in patients with ER-negative tumors treated with chemotherapy. CONCLUSIONS: We found evidence of four loci associated with breast cancer-specific survival within three patient subgroups. There was limited evidence for the existence of associations in other patient subgroups. However, the power for many subgroups is limited due to the low number of events. Even so, our results suggest that the impact of common germline genetic variants on breast cancer-specific survival might be limited

Modeling and observation of freshwater and sediment plumes at the Catalan Coast

Coastal ocean regions are dynamic and complex environments that are driven by an intricate interaction between atmospheric, oceanographic, estuarine/riverine and land–sea processes [Smith et al., 2010]. Specifically, freshwater discharge from rivers and urban outflows to the ocean water has profound effects on the physical, chemical, and biological processes in coastal waters. It induces circulation patterns and modifies mixing processes [Milliman and Farnsworth, 2011]. In addition, the coastal plume formed by the buoyant inflow is a highly dynamic region with significant salinity gradients and constitutes an important dynamical component of the coastal circulation [Morris et al., 1981]. Due to their ecological and dynamical importance, a good understanding of the mixing and transport processes in river plumes is required for the maintenance of coastal ecosystems and their resources. The combination of satellite ocean data, in situ coastal ocean measurements and use of numerical models offer exciting opportunities to improve our knowledge of the ocean dynamics,in coastal areas.In this paper results from a coastal circulation model for the Catalan coast (will be compared with data from dedicated campaigns and satellite observations. The simulation incorporate river and urban discharges into the sea. The combination of local topography with torrential rain fall can produce considerable local run-off on a short time with a large impact on the receiving coastal waters. This can be captured by satellite data (Figure 1) and campaign data.Methodology and aimFor the coastal circulation model, version 3.0 of the Regional Ocean Modeling System (ROMS, Details on [Haidvogel et al., 2000]) has been implemented for a small portion of the Catalan coast. ROMS uses sigma coordinates and solves the 3-D Reynolds-Averaged Navier-Stokes equations. The code design is modular, so that different choices for advection and mixing, for example, may be applied by simply modifying preprocessor flags. Nested increasing-resolution domains have been used in order to reproduce with enough resolution the coastal circulation. The boundary conditions are obtained from the MyOcean project [http://www.myocean.eu.org./].River and urban run-off are estimated based on rainfall (predictions) form the contributing catchments areas. Conceptual models based on a reservoir-type schematization of the river and sewer network have been set up to allow the fast prediction of the different point source boundary conditions [Keupers et al., 2011].Model output for selected events will be compared to satellite data from My-Ocean project [http://www.myocean.eu.org./], to data from dedicated campaigns during the Field AC project [http://lim050.upc.es/field ac/index.html] and to data from operational buoys in the Catalan coastal area

Cancer Surveillance in Healthy Carriers of Germline Pathogenic Variants in BRCA1/2: A Review of Secondary Prevention Guidelines

Germline pathogenic alterations in the breast cancer susceptibility genes 1 (BRCA1) and 2 (BRCA2) are the most prevalent causes of hereditary breast and ovarian cancer. The increasing trend in proportion of cancer patients undergoing genetic testing, followed by predictive testing in families of new index patients, results in a significant increase of healthy germline BRCA1/2 mutation carriers who are at increased risk for breast, ovarian, and other BRCA-related cancers. This review aims to give an overview of available screening guidelines for female and male carriers of pathogenic or likely pathogenic germline BRCA1/2 variants per cancer type, incorporating malignancies that are more or less recently well correlated with BRCA1/2. We selected guidelines from national/international organizations and/or professional associations that were published or updated between January 1, 2015, and February 1, 2020. In total, 12 guidelines were included. This review reveals several significant discordances between the different guidelines. Optimal surveillance strategies depend on accurate age-specific cancer risk estimates, which are not reliably available for all BRCA-related cancers. Up-to-date national or international consensus guidelines are of utmost importance to harmonize counseling and proposed surveillance strategies for BRCA1/2 carriers

Charge radii of odd-A 191–211Po isotopes

Isotope shifts have been measured for the odd-A polonium isotopes 191–211Po and changes in the nuclear mean square charge radii δr2 have been deduced. The measurements were performed at CERN-ISOLDE using the in-source resonance-ionization spectroscopy technique. The combined analysis of these data and our recent results for even-A polonium isotopes indicates an onset of deformation already at 197,198Po, when going away from stability. This is significantly earlier than was suggested by previous theoretical and experimental studies of the polonium isotopes. Moreover and in contrast to the mercury isotopes, where a strong odd–even staggering of the charge radii of the ground states was observed by approaching the neutron mid-shell at N = 104, no such effect is present in polonium down to 191Po. Consequently the charge radii of both isomeric and ground states of the odd-A polonium isotopes follow the same trend as the even-A isotopes.status: publishe

Electromagnetic moments of odd-A 193-203,211Po isotopes

Hyperfine splitting parameters have been measured for the neutron-deficient odd-mass polonium isotopes and isomers Po193-203g,m, Po209,211. The measurement was performed at the ISOLDE (CERN) online mass separator using the in-source resonance ionization spectroscopy technique. The magnetic dipole moments Î and spectroscopic electric quadrupole moments QS have been deduced. Their implication for the understanding of nuclear structure in the vicinity of the closed proton shell at Z=82 and the neutron mid-shell at N=104 is discussed. For the most neutron-deficient nuclei (A=193,195,197), a deviation of Î and QS from the nearly constant values for heavier polonium nuclei was observed. Particle-plus-rotor calculations with static oblate deformation describe the electromagnetic moments for these nuclei well, provided a gradual increase of a mean deformation when going to lighter masses is assumed for the polonium nuclei with