Quantum-mechanical calculations of the stabilities of fluxional isomers of C_4H_7^+ in solution

Although numerous quantum calculations have been made over the years of the stabilities of the fluxional isomers of C4H7+, none have been reported for other than the gas phase (which is unrealistic for these ionic species) that exhibit exceptional fluxional properties in solution. To be sure, quantum-mechanical calculations for solutions are subject to substantial uncertainties, but nonetheless it is important to see whether the trends seen for the gas-phase C4H7+ species are also found in calculations for polar solutions. Of the C4H7+ species, commonly designated bisected-cyclopropylcarbinyl 1, unsym-bicyclobutonium-2, sym-bicyclobutonium 3, allylcarbinyl 4, and pyramidal structure 6, the most advanced gas-phase calculations available thus far suggest that the order of stability is 1 ≥ 2 ≥ 3 >> 4 >> 6 with barriers of only ~1 kcal/mol for interconversions among 1, 2, and 3. We report here that, when account is taken of solvation, 2 turns out to be slightly more stable than 1 or 3 in polar solvents. The pattern of the overall results is unexpected, in that despite substantial differences in structures and charge distributions between the primary players in the C4H7+ equilibria and the large differences in solvation energies calculated for the solvents considered, the differential solvent effects from species to species are rather small

A theoretical study of the conversion of gas phase methanediol to formaldehyde

Methanediol, or methylene glycol, is a product of the liquid phase reaction of water and formaldehyde and is a predicted interstellar grain surface species. Detection of this molecule in a hot core environment would advance the understanding of complex organic chemistry in the interstellar medium, but its laboratory spectroscopic characterization is a prerequisite for such observational searches. This theoretical study investigates the unimolecular decomposition of methanediol, specifically the thermodynamic and kinetic stability of the molecule under typical laboratory and interstellar conditions. Methanediol was found to be thermodynamically stable at temperatures of <100 K, which is the characteristic temperature range for interstellar grain mantles. The infinite-pressure RRKM unimolecular decomposition rate was found to be <10^(−18) s^(−1) at 300 K, indicating gas phase kinetic stability for typical laboratory and hot core temperatures. Therefore, both laboratory studies of and observational searches for this molecule should be feasible

Aminomethanol water elimination: Theoretical examination

The mechanism for the formation of hexamethylenetetraamine predicts the formation of aminomethanol from the addition of ammonia to formaldehyde. This molecule subsequently undergoes unimolecular decomposition to form methanimine and water. Aminomethanol is the predicted precursor to interstellar glycine, and is therefore of great interest for laboratory spectroscopic study, which would serve as the basis for observational searches. The height of the water loss barrier is therefore useful in the determination of an appropriate experimental approach for spectroscopic characterization of aminomethanol. We have determined the height of this barrier to be 55 kcal/mol at ambient temperatures. In addition, we have determined the infinite-pressure Rice-Ramsperger-Kassel-Marcus unimolecular decomposition rate to be < 10^(-25) s^(-1) at 300 K, indicating gas-phase kinetic stability for typical laboratory and hot core temperatures. Therefore, spectroscopic characterization of and observational searches for this molecule should be straightforward provided an efficient formation mechanism can be found

An NMR and Quantum Mechanical Investigation of Solvent Effects on Conformational Equilibria of Butanedinitrile

Vicinal proton−proton NMR couplings and ab initio quantum mechanics have been used to investigate solvent effects on conformational equilibria of butanedinitrile. The trans and gauche conformations are about equally favored at room temperature in solvents of low dielectric constant while the equilibrium is essentially the statistical proportions of one-third trans and two-thirds gauche in water with a high dielectric constant. The coupling assignments were confirmed with the aid of stereospecific deuterium-labeled (R,R or S,S)-1,2-dideuteriobutanedinitrile. The calculations support the observed trends. Similar results were observed for 1,2-dibromo- and dichloroethanes

Observing low elevation sky and the CMB Cold Spot with BICEP3 at the South Pole

BICEP3 is a 520 mm aperture on-axis refracting telescope at the South Pole, which observes the polarization of the cosmic microwave background (CMB) at 95 GHz to search for the B-mode signal from inflationary gravitational waves. In addition to this main target, we have developed a low-elevation observation strategy to extend coverage of the Southern sky at the South Pole, where BICEP3 can quickly achieve degree-scale E-mode measurements over a large area. An interesting E-mode measurement is probing a potential polarization anomaly around the CMB Cold Spot. During the austral summer seasons of 2018-19 and 2019-20, BICEP3 observed the sky with a flat mirror to redirect the beams to various low elevation ranges. The preliminary data analysis shows degree-scale E-modes measured with high signal-to-noise ratio

Observing low elevation sky and the CMB Cold Spot with BICEP3 at the South Pole

BICEP3 is a 520 mm aperture on-axis refracting telescope at the South Pole, which observes the polarization of the cosmic microwave background (CMB) at 95 GHz to search for the B-mode signal from inflationary gravitational waves. In addition to this main target, we have developed a low-elevation observation strategy to extend coverage of the Southern sky at the South Pole, where BICEP3 can quickly achieve degree-scale E-mode measurements over a large area. An interesting E-mode measurement is probing a potential polarization anomaly around the CMB Cold Spot. During the austral summer seasons of 2018-19 and 2019-20, BICEP3 observed the sky with a flat mirror to redirect the beams to various low elevation ranges. The preliminary data analysis shows degree-scale E-modes measured with high signal-to-noise ratio

Probabilistic Inference of Transcription Factor Binding from Multiple Data Sources

An important problem in molecular biology is to build a complete understanding of transcriptional regulatory processes in the cell. We have developed a flexible, probabilistic framework to predict TF binding from multiple data sources that differs from the standard hypothesis testing (scanning) methods in several ways. Our probabilistic modeling framework estimates the probability of binding and, thus, naturally reflects our degree of belief in binding. Probabilistic modeling also allows for easy and systematic integration of our binding predictions into other probabilistic modeling methods, such as expression-based gene network inference. The method answers the question of whether the whole analyzed promoter has a binding site, but can also be extended to estimate the binding probability at each nucleotide position. Further, we introduce an extension to model combinatorial regulation by several TFs. Most importantly, the proposed methods can make principled probabilistic inference from multiple evidence sources, such as, multiple statistical models (motifs) of the TFs, evolutionary conservation, regulatory potential, CpG islands, nucleosome positioning, DNase hypersensitive sites, ChIP-chip binding segments and other (prior) sequence-based biological knowledge. We developed both a likelihood and a Bayesian method, where the latter is implemented with a Markov chain Monte Carlo algorithm. Results on a carefully constructed test set from the mouse genome demonstrate that principled data fusion can significantly improve the performance of TF binding prediction methods. We also applied the probabilistic modeling framework to all promoters in the mouse genome and the results indicate a sparse connectivity between transcriptional regulators and their target promoters. To facilitate analysis of other sequences and additional data, we have developed an on-line web tool, ProbTF, which implements our probabilistic TF binding prediction method using multiple data sources. Test data set, a web tool, source codes and supplementary data are available at: http://www.probtf.org

WSES guidelines for management of Clostridium difficile infection in surgical patients

In the last two decades there have been dramatic changes in the epidemiology of Clostridium difficile infection (CDI), with increases in incidence and severity of disease in many countries worldwide. The incidence of CDI has also increased in surgical patients. Optimization of management of C difficile, has therefore become increasingly urgent. An international multidisciplinary panel of experts prepared evidenced-based World Society of Emergency Surgery (WSES) guidelines for management of CDI in surgical patients.Peer reviewe

New Quantum Monte Carlo Algorithms to Efficiently Utilize Massively Parallel Computers

iii This work is dedicated to my wife, parents, grandparents, and brother. They have supported me in every way possible and have been a constant encouragement during my education. Special recognition is given to my grandparents, Joe and LaNell Lanning, who taught me that there are many things much more important than work. They did not live to see me graduate. iv We are perhaps not far removed from the time when we shall be able to submit the bulk of chemical phenomena to calculation. [1