Species competition: coexistence, exclusion and clustering

We present properties of Lotka-Volterra equations describing ecological competition among a large number of competing species. First we extend to the case of a non-homogeneous niche space stability conditions for solutions representing species coexistence. Second, we discuss mechanisms leading to species clustering and obtain an analytical solution for a lumped state in a specific instance of the system. We also discuss how realistic ecological interactions may result in different types of competition coefficients.Comment: 9 pages, 4 figures. Replaced with published version. Freely available from the publisher site under the Creative Commons Attribution licens

Evolution of boldness and life-history in response to selective harvesting

Whether intensive harvesting alters the behavioural repertoire of exploited fishes is currently unknown, but plausible. We extend a fish life-history model to account for boldness as a personality trait that affects foraging intensity, which affects energy intake and risk from predation and fishing gear. We systematically investigate life-history and behavioral trait evolution along the boldness-timidity axis in response to the full range of common selectivity and exploitation patterns in fisheries. In agreement with previous studies we find that any type of harvesting selects for fast life histories and that merely elevated, yet unselective, fishing mortality favors boldness. We also find that timid-selective fishing (which can be expected in selected species targeted by active gear types) selects for increased boldness. By contrast, increased timidity is predicted when fishing targets bolder individuals common to passive gears, whether in combination with selection on size or not. Altered behavior caused by intensive harvesting should be commonplace in nature, which can have far-reaching ecological, evolutionary and managerial impacts. Evolution of timidity is expected to strongly erode catchability, which will negatively affect human well-being and influence the reliability of stock assessments that rely on fishery-dependent data.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author

Multispecies, trait and community size spectrum ecological modelling in R (mizer)

Size spectrum ecological models have emerged as a conceptually simple way to model a large community of individuals which grow and change trophic level during their lives. They are a subset of physiologically structured models where growth (and thus maturation) is food dependent, and processes are formulated in terms of individual level processes. A key feature is that of a size spectrum, where the total abundance of individuals at size scales negatively with size: there are more small things than big things. Mizer is a software package for implementing size spectrum ecological models using the R statistical programming environment. The package has been developed to model marine ecosystems that are subject to fishing.JRC.G.4-Maritime affair

Correction of Optical Aberrations in Elliptic Neutron Guides

Modern, nonlinear ballistic neutron guides are an attractive concept in neutron beam delivery and instrumentation, because they offer increased performance over straight or linearly tapered guides. However, like other ballistic geometries they have the potential to create significantly non-trivial instrumental resolution functions. We address the source of the most prominent optical aberration, namely coma, and we show that for extended sources the off-axis rays have a different focal length from on-axis rays, leading to multiple reflections in the guide system. We illustrate how the interplay between coma, sources of finite size, and mirrors with non-perfect reflectivity can therefore conspire to produce uneven distributions in the neutron beam divergence, the source of complicated resolution functions. To solve these problems, we propose a hybrid elliptic-parabolic guide geometry. Using this new kind of neutron guide shape, it is possible to condition the neutron beam and remove almost all of the aberrations, whilst providing the same performance in beam current as a standard elliptic neutron guide. We highlight the positive implications for a number of neutron scattering instrument types that this new shape can bring.Comment: Presented at NOP2010 Conference in Alpe d'Huez, France, in March 201

mizer: an R package for multispecies, trait-based and community size spectrum ecological modelling

1. Size spectrum ecological models are representations of a community of individuals which grow and change trophic level. A key emergent feature of these models is the size spectrum; the total abundance of all individuals that scales negatively with size. The models we focus on are designed to capture fish community dynamics useful for assessing the community impacts of fishing. 2. We present mizer, an R package for implementing dynamic size spectrum ecological models of an entire aquatic community subject to fishing. Multiple fishing gears can be defined and fishing mortality can change through time making it possible to simulate a range of exploitation strategies and management options. 3. mizer implements three versions of the size spectrum modelling framework: the community model, where individuals are only characterized by their size; the trait-based model, where individuals are further characterized by their asymptotic size; and the multispecies model where additional trait differences are resolved. 4. A range of plot, community indicator and summary methods are available to inspect the results of the simulations

The consequences of balanced harvesting of fish communities

Balanced harvesting, where species or individuals are exploited in accordance with their productivity, has been proposed as a way to minimize the effects of fishing on marine fish communities and ecosystems. This calls for a thorough examination of the consequences balanced harvesting has on fish community structure and yield. We use a size- and trait-based model that resolves individual interactions through competition and predation to compare balanced harvesting with traditional selective harvesting, which protects juvenile fish from fishing. Four different exploitation patterns, generated by combining selective or unselective harvesting with balanced or unbalanced fishing, are compared. We find that unselective balanced fishing, where individuals are exploited in proportion to their productivity, produces a slightly larger total maximum sustainable yield than the other exploitation patterns and, for a given yield, the least change in the relative biomass composition of the fish community. Because fishing reduces competition, predation and cannibalism within the community, the total maximum sustainable yield is achieved at high exploitation rates. The yield from unselective balanced fishing is dominated by small individuals, whereas selective fishing produces a much higher proportion of large individuals in the yield. Although unselective balanced fishing is predicted to produce the highest total maximum sustainable yield and the lowest impact on trophic structure, it is effectively a fishery predominantly targeting small forage fish