3,153 research outputs found
Experimental Model for Porcine Circovirus and Porcine Parvovirus Coinfection of Specific-Pathogen-Free Pigs
Porcine parvovirus (PPV) coinfection has been shown to increase the incidence and severity of porcine circovirus 2 (PCV2) associated disease in gnotobiotic and in colostrum-deprived pigs. PPV and PCV2 coinfection is also common in the grow-finish pigs in the field today. The objectives of this study were to determine the interactions between PCV2 and PPV in conventional SPF pigs and to determine whether PPV vaccine has an effect on the coinfection. Seventy-two, 6-week-old conventional pigs were inoculated either with PCV2, PPV, both PCV2 and PPV, or sham-inoculated. Before inoculation, 56 pigs were vaccinated twice with a PPV killed-virus vaccine. Clinical signs due to postweaning multisystemic wasting syndrome (PMWS) (fever, respiratory disease, jaundice, weight loss) were seen in both coinfected groups, vaccinated as well as nonvaccinated. The majority of pigs in the PCV2, and in the PCV2/PPV-inoculated groups had mild-to-severe lymphoid depletion with histiocytic replacement of follicles, and mild lymphohistiocytic interstitial pneumonia. The majority of pigs in the PCV2/PPV-coinfected groups also had mild-to-severe lymphoplasmacytic interstitial nephritis and hepatitis. There were no statistical differences between the two coinfected groups (vaccinated and non-vaccinated) in terms of clinical disease, and macroscopic and microscopic lesions. The results indicated that PPV and PCV2 coinfection resulted in increased severity of clinical disease and lymphoid lesions typical of PMWS and that a PPV-vaccination was not able to prevent PMWS in PCV2/PPV-coinfected pigs
A unique homologue of the eukaryotic protein-modifier ubiquitin present in the bacterium Bacteroides fragilis, a predominant resident of the human gastrointestinal tract
In the complete genome sequences of Bacteroides fragilis NCTC9343 and 638R, we have discovered a gene, ubb, the product of which has 63 % identity to human ubiquitin and cross-reacts with antibodies raised against bovine ubiquitin. The sequence of ubb is closest in identity (76 %) to the ubiquitin gene from a migratory grasshopper entomopoxvirus, suggesting acquisition by inter-kingdom horizontal gene transfer. We have screened clinical isolates of B. fragilis from diverse geographical regions and found that ubb is present in some, but not all, strains. The gene is transcribed and the mRNA is translated in B. fragilis, but deletion of ubb did not have a detrimental effect on growth. BfUbb has a predicted signal sequence; both full-length and processed forms were detected in whole-cell extracts, while the processed form was found in concentrated culture supernatants. Purified recombinant BfUbb inhibited in vitro ubiquitination and was able to covalently bind the human E1 activating enzyme, suggesting it could act as a suicide substrate in vivo. B. fragilis is one of the predominant members of the normal human gastrointestinal microbiota with estimates of up to >1011 cells per g faeces by culture. These data indicate that the gastro-intestinal tract of some individuals could contain a significant amount of aberrant ubiquitin with the potential to inappropriately activate the host immune system and/or interfere with eukaryotic ubiquitin activity. This discovery could have profound implications in relation to our understanding of human diseases such as inflammatory bowel and autoimmune diseases
The Sloan Digital Sky Survey Reverberation Mapping Project: Velocity Shifts of Quasar Emission Lines
Quasar emission lines are often shifted from the systemic velocity due to
various dynamical and radiative processes in the line-emitting region. The
level of these velocity shifts depends both on the line species and on quasar
properties. We study velocity shifts for the line peaks of various narrow and
broad quasar emission lines relative to systemic using a sample of 849 quasars
from the Sloan Digital Sky Survey Reverberation Mapping (SDSS-RM) project. The
coadded (from 32 epochs) spectra of individual quasars have sufficient
signal-to-noise ratio (SNR) to measure stellar absorption lines to provide
reliable systemic velocity estimates, as well as weak narrow emission lines.
The sample also covers a large dynamic range in quasar luminosity (~2 dex),
allowing us to explore potential luminosity dependence of the velocity shifts.
We derive average line peak velocity shifts as a function of quasar luminosity
for different lines, and quantify their intrinsic scatter. We further quantify
how well the peak velocity can be measured for various lines as a function of
continuum SNR, and demonstrate there is no systematic bias in the line peak
measurements when the spectral quality is degraded to as low as SNR~3 per SDSS
pixel. Based on the observed line shifts, we provide empirical guidelines on
redshift estimation from [OII]3728, [OIII]5008, [NeV]3426, MgII, CIII],
HeII1640, broad Hbeta, CIV, and SiIV, which are calibrated to provide unbiased
systemic redshifts in the mean, but with increasing intrinsic uncertainties of
46, 56, 119, 205, 233, 242, 400, 415, and 477 km/s, in addition to the
measurement uncertainties. These more realistic redshift uncertainties are
generally much larger than the formal uncertainties reported by the redshift
pipelines for spectroscopic quasar surveys, and demonstrate the infeasibility
of measuring quasar redshifts to better than ~200 km/s with only broad lines.Comment: matched to the published version; minor changes and conclusions
unchange
Robust Weak-lensing Mass Calibration of Planck Galaxy Clusters
In light of the tension in cosmological constraints reported by the Planck
team between their SZ-selected cluster counts and Cosmic Microwave Background
(CMB) temperature anisotropies, we compare the Planck cluster mass estimates
with robust, weak-lensing mass measurements from the Weighing the Giants (WtG)
project. For the 22 clusters in common between the Planck cosmology sample and
WtG, we find an overall mass ratio of \left =
0.688 \pm 0.072. Extending the sample to clusters not used in the Planck
cosmology analysis yields a consistent value of from 38 clusters in common. Identifying the
weak-lensing masses as proxies for the true cluster mass (on average), these
ratios are lower than the default mass bias of 0.8 assumed in
the Planck cluster analysis. Adopting the WtG weak-lensing-based mass
calibration would substantially reduce the tension found between the Planck
cluster count cosmology results and those from CMB temperature anisotropies,
thereby dispensing of the need for "new physics" such as uncomfortably large
neutrino masses (in the context of the measured Planck temperature anisotropies
and other data). We also find modest evidence (at 95 per cent confidence) for a
mass dependence of the calibration ratio and discuss its potential origin in
light of systematic uncertainties in the temperature calibration of the X-ray
measurements used to calibrate the Planck cluster masses. Our results exemplify
the critical role that robust absolute mass calibration plays in cluster
cosmology, and the invaluable role of accurate weak-lensing mass measurements
in this regard.Comment: 5 pages, 2 figure
The Sloan Digital Sky Survey Reverberation Mapping Project: Ensemble Spectroscopic Variability of Quasar Broad Emission Lines
We explore the variability of quasars in the MgII and Hbeta broad emission
lines and UV/optical continuum emission using the Sloan Digital Sky Survey
Reverberation Mapping project (SDSS-RM). This is the largest spectroscopic
study of quasar variability to date: our study includes 29 spectroscopic epochs
from SDSS-RM over months, containing 357 quasars with MgII and 41 quasars
with Hbeta . On longer timescales, the study is also supplemented with
two-epoch data from SDSS-I/II. The SDSS-I/II data include an additional
quasars with MgII and 572 quasars with Hbeta. The MgII emission line is
significantly variable ( 10% on 100-day timescales), a necessary
prerequisite for its use for reverberation mapping studies. The data also
confirm that continuum variability increases with timescale and decreases with
luminosity, and the continuum light curves are consistent with a damped
random-walk model on rest-frame timescales of days. We compare the
emission-line and continuum variability to investigate the structure of the
broad-line region. Broad-line variability shows a shallower increase with
timescale compared to the continuum emission, demonstrating that the broad-line
transfer function is not a -function. Hbeta is more variable than MgII
(roughly by a factor of ), suggesting different excitation mechanisms,
optical depths and/or geometrical configuration for each emission line. The
ensemble spectroscopic variability measurements enabled by the SDSS-RM project
have important consequences for future studies of reverberation mapping and
black hole mass estimation of quasars.Comment: 20 pages, 25 figures. ApJ accepted: minor revisions following referee
repor
Cognitive representations of disability behaviours in people with mobility limitations : consistency with theoretical constructs
Disability is conceptualised as behaviour by psychological theory and as a result of bodily impairment by medical models. However, how people with disabilities conceptualise those disabilities is unclear. The purpose of this study was to examine disability representations in people with mobility disabilities. Thirteen people with mobility disabilities completed personal repertory grids (using the method of triads) applied to activities used to measure disabilities. Ten judges with expertise in health psychology then examined the correspondence between the elicited disability constructs and psychological and medical models of disability. Participants with mobility disabilities generated 73 personal constructs ofdisability. These constructs were judged consistent with the content of two psychological models, namely the theory of planned behaviour and social cognitive theory and with the main medical model of disability, the International Classification of Functioning Disability and Health.Individuals with activity limitations conceptualise activities in a manner that is compatible with both psychological and medical models. This ensures adequate communication in contexts where the medical model is relevant, e.g. clinical contexts, as well as in everyday conversation about activities and behaviours. Finally, integrated models of disability may be of value for theory driven interdisciplinary approaches to disability and rehabilitation
Projections of Ebola outbreak size and duration with and without vaccine use in Équateur, Democratic Republic of Congo, as of May 27, 2018.
As of May 27, 2018, 6 suspected, 13 probable and 35 confirmed cases of Ebola virus disease (EVD) had been reported in Équateur Province, Democratic Republic of Congo. We used reported case counts and time series from prior outbreaks to estimate the total outbreak size and duration with and without vaccine use. We modeled Ebola virus transmission using a stochastic branching process model that included reproduction numbers from past Ebola outbreaks and a particle filtering method to generate a probabilistic projection of the outbreak size and duration conditioned on its reported trajectory to date; modeled using high (62%), low (44%), and zero (0%) estimates of vaccination coverage (after deployment). Additionally, we used the time series for 18 prior Ebola outbreaks from 1976 to 2016 to parameterize the Thiel-Sen regression model predicting the outbreak size from the number of observed cases from April 4 to May 27. We used these techniques on probable and confirmed case counts with and without inclusion of suspected cases. Probabilistic projections were scored against the actual outbreak size of 54 EVD cases, using a log-likelihood score. With the stochastic model, using high, low, and zero estimates of vaccination coverage, the median outbreak sizes for probable and confirmed cases were 82 cases (95% prediction interval [PI]: 55, 156), 104 cases (95% PI: 58, 271), and 213 cases (95% PI: 64, 1450), respectively. With the Thiel-Sen regression model, the median outbreak size was estimated to be 65.0 probable and confirmed cases (95% PI: 48.8, 119.7). Among our three mathematical models, the stochastic model with suspected cases and high vaccine coverage predicted total outbreak sizes closest to the true outcome. Relatively simple mathematical models updated in real time may inform outbreak response teams with projections of total outbreak size and duration
Optical and ultraviolet spectroscopic analysis of SN 2011fe at late times
We present optical spectra of the nearby Type Ia supernova SN 2011fe at 100,
205, 311, 349, and 578 days post-maximum light, as well as an ultraviolet
spectrum obtained with Hubble Space Telescope at 360 days post-maximum light.
We compare these observations with synthetic spectra produced with the
radiative transfer code PHOENIX. The day +100 spectrum can be well fit with
models which neglect collisional and radiative data for forbidden lines.
Curiously, including this data and recomputing the fit yields a quite similar
spectrum, but with different combinations of lines forming some of the stronger
features. At day +205 and later epochs, forbidden lines dominate much of the
optical spectrum formation; however, our results indicate that recombination,
not collisional excitation, is the most influential physical process driving
spectrum formation at these late times. Consequently, our synthetic optical and
UV spectra at all epochs presented here are formed almost exclusively through
recombination-driven fluorescence. Furthermore, our models suggest that the
ultraviolet spectrum even as late as day +360 is optically thick and consists
of permitted lines from several iron-peak species. These results indicate that
the transition to the "nebular" phase in Type Ia supernovae is complex and
highly wavelength-dependent.Comment: 22 pages, 21 figuress, 1 table, submitted to MNRA
Bartonella quintana Endocarditis in Dogs
TOC summary line: PCR and sequencing provide the first evidence that B. quintana can be pathogenic in dogs
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