Armed conflict and fisheries in the Lake Victoria basin

Civil conflict is the most prevalent form of armed conflict in the world today, but this significant driver of food and income security has been largely missing from studies of fisheries. Fisheries conflict is an example of complex dynamics operating in social-ecological systems. We theorize and document the existence of such a feedback loop between conflict in Uganda and fisheries in Lake Victoria. Civil war in northern Uganda resulted in mass human population displacement, which corresponded in time with increases in fishing effort in Lake Victoria. Subsequent changes in catch of Nile perch, the dominant commercial fishery, sparked armed conflict in the lake itself, at Migingo Island, between Uganda and Kenya. From this case study, we draw seven main conclusions. First, these correlation-based relationships are illustrative but not conclusive and we call for further empirical investigation. Second, the couplings between conflict and fishing subsystems are spatially asymmetric: conflict effects are diffuse in their links to broad changes in the fishery, whereas fishery effects may produce more localized conflict events. Third, and most relevant to conflict scholars, the drivers of fishing effort and catch may originate in different subsystems, but their changes and effects must be analyzed in concert. Fourth, the complex and path-dependent impacts of conflicts on natural resources in general, and fisheries in particular, highlights the urgent need for targeted surveys and more mechanistic understanding. Fifth, the open access nature of fisheries in Lake Victoria may exacerbate instabilities not present in other systems. Sixth, the diffuse and context-specific effects of conflicts on fisheries means models of fisheries management (e.g., stock assessment) should not incorporate conflict as a driver at this time. Finally, countries and their stakeholders should focus on diversification in employment for short term coping mechanisms during conflict as a means of short-circuiting the conflict-fisheries feedback loop.U.S. Army Research Office under the Minerva Initiative of the U.S. Department of Defense [W911NF-09-1-007]; National Science Foundation Dynamics of Coupled Natural and Human Systems [1358861]Open Access JournalThis item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at [email protected]

Mucus entrapment of particles by a suspension-feeding tilapia (Pisces: Cichlidae)

A miniature fiberoptic endoscope was used to observe the processes of particle encounter and retention inside the buccopharyngeal cavity of suspension-feeding tilapia. Small particles (38 µm to 1.0 mm in diameter) were trapped in strands and aggregates of mucus, which usually slid posteriorly on the ceratobranchials of arches I­IV towards the esophagus while the fish pumped water through the buccopharyngeal cavity. During stage 1 of periodic reversals of water flow inside the buccopharynx, mucus-bound particles usually lifted off the arch surfaces and travelled a short distance in an anterior or anterodorsal direction. During stage 2 of a reversal, the mucus usually resumed travel in a posterior or posteroventral direction and exited the field of view. Mucus was present less often during feeding on large particles (3­10 mm in diameter) than on small particles, and large particles were rarely observed to be attached to mucus. We discuss the advantages to suspension-feeding fishes of using aerosol filtration by mucus entrapment rather than sieving, and predict that many cichlid and cyprinid suspension feeders that consume bacteria and phytoplankton use mucus for aerosol filtration

Caribbean Corals in Crisis: Record Thermal Stress, Bleaching, and Mortality in 2005

BACKGROUND The rising temperature of the world's oceans has become a major threat to coral reefs globally as the severity and frequency of mass coral bleaching and mortality events increase. In 2005, high ocean temperatures in the tropical Atlantic and Caribbean resulted in the most severe bleaching event ever recorded in the basin. METHODOLOGY/PRINCIPAL FINDINGS Satellite-based tools provided warnings for coral reef managers and scientists, guiding both the timing and location of researchers' field observations as anomalously warm conditions developed and spread across the greater Caribbean region from June to October 2005. Field surveys of bleaching and mortality exceeded prior efforts in detail and extent, and provided a new standard for documenting the effects of bleaching and for testing nowcast and forecast products. Collaborators from 22 countries undertook the most comprehensive documentation of basin-scale bleaching to date and found that over 80% of corals bleached and over 40% died at many sites. The most severe bleaching coincided with waters nearest a western Atlantic warm pool that was centered off the northern end of the Lesser Antilles. CONCLUSIONS/SIGNIFICANCE Thermal stress during the 2005 event exceeded any observed from the Caribbean in the prior 20 years, and regionally-averaged temperatures were the warmest in over 150 years. Comparison of satellite data against field surveys demonstrated a significant predictive relationship between accumulated heat stress (measured using NOAA Coral Reef Watch's Degree Heating Weeks) and bleaching intensity. This severe, widespread bleaching and mortality will undoubtedly have long-term consequences for reef ecosystems and suggests a troubled future for tropical marine ecosystems under a warming climate.This work was partially supported by salaries from the NOAA Coral Reef Conservation Program to the NOAA Coral Reef Conservation Program authors. NOAA provided funding to Caribbean ReefCheck investigators to undertake surveys of bleaching and mortality. Otherwise, no funding from outside authors' institutions was necessary for the undertaking of this study. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript

Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis

<p>Abstract</p> <p>Background</p> <p>Motivated by the precarious state of the world's coral reefs, there is currently a keen interest in coral transcriptomics. By identifying changes in coral gene expression that are triggered by particular environmental stressors, we can begin to characterize coral stress responses at the molecular level, which should lead to the development of more powerful diagnostic tools for evaluating the health of corals in the field. Furthermore, the identification of genetic variants that are more or less resilient in the face of particular stressors will help us to develop more reliable prognoses for particular coral populations. Toward this end, we performed deep mRNA sequencing of the cauliflower coral, <it>Pocillopora damicornis</it>, a geographically widespread Indo-Pacific species that exhibits a great diversity of colony forms and is able to thrive in habitats subject to a wide range of human impacts. Importantly, <it>P. damicornis </it>is particularly amenable to laboratory culture. We collected specimens from three geographically isolated Hawaiian populations subjected to qualitatively different levels of human impact. We isolated RNA from colony fragments ("nubbins") exposed to four environmental stressors (heat, desiccation, peroxide, and hypo-saline conditions) or control conditions. The RNA was pooled and sequenced using the 454 platform.</p> <p>Description</p> <p>Both the raw reads (n = 1, 116, 551) and the assembled contigs (n = 70, 786; mean length = 836 nucleotides) were deposited in a new publicly available relational database called PocilloporaBase <url>http://www.PocilloporaBase.org</url>. Using BLASTX, 47.2% of the contigs were found to match a sequence in the NCBI database at an E-value threshold of ≤.001; 93.6% of those contigs with matches in the NCBI database appear to be of metazoan origin and 2.3% bacterial origin, while most of the remaining 4.1% match to other eukaryotes, including algae and amoebae.</p> <p>Conclusions</p> <p><it>P. damicornis </it>now joins the handful of coral species for which extensive transcriptomic data are publicly available. Through PocilloporaBase <url>http://www.PocilloporaBase.org</url>, one can obtain assembled contigs and raw reads and query the data according to a wide assortment of attributes including taxonomic origin, PFAM motif, KEGG pathway, and GO annotation.</p

Як уникнути підйому рівня води?

East Africa’s Lake Victoria provides resources and services to millions of people on the lake’s shores and abroad. In particular, the lake’s fisheries are an important source of protein, employment, and international economic connections for the whole region. Nonetheless, stock dynamics are poorly understood and currently unpredictable. Furthermore, fishery dynamics are intricately connected to other supporting services of the lake as well as to lakeshore societies and economies. Much research has been carried out piecemeal on different aspects of Lake Victoria’s system; e.g., societies, biodiversity, fisheries, and eutrophication. However, to disentangle drivers and dynamics of change in this complex system, we need to put these pieces together and analyze the system as a whole. We did so by first building a qualitative model of the lake’s social-ecological system. We then investigated the model system through a qualitative loop analysis, and finally examined effects of changes on the system state and structure. The model and its contextual analysis allowed us to investigate system-wide chain reactions resulting from disturbances. Importantly, we built a tool that can be used to analyze the cascading effects of management options and establish the requirements for their success. We found that high connectedness of the system at the exploitation level, through fisheries having multiple target stocks, can increase the stocks’ vulnerability to exploitation but reduce society’s vulnerability to variability in individual stocks. We describe how there are multiple pathways to any change in the system, which makes it difficult to identify the root cause of changes but also broadens the management toolkit. Also, we illustrate how nutrient enrichment is not a self-regulating process, and that explicit management is necessary to halt or reverse eutrophication. This model is simple and usable to assess system-wide effects of management policies, and can serve as a paving stone for future quantitative analyses of system dynamics at local scales

Rhodolith Beds Are Major CaCO3 Bio-Factories in the Tropical South West Atlantic

Rhodoliths are nodules of non-geniculate coralline algae that occur in shallow waters (<150 m depth) subjected to episodic disturbance. Rhodolith beds stand with kelp beds, seagrass meadows, and coralline algal reefs as one of the world's four largest macrophyte-dominated benthic communities. Geographic distribution of rhodolith beds is discontinuous, with large concentrations off Japan, Australia and the Gulf of California, as well as in the Mediterranean, North Atlantic, eastern Caribbean and Brazil. Although there are major gaps in terms of seabed habitat mapping, the largest rhodolith beds are purported to occur off Brazil, where these communities are recorded across a wide latitudinal range (2°N - 27°S). To quantify their extent, we carried out an inter-reefal seabed habitat survey on the Abrolhos Shelf (16°50′ - 19°45′S) off eastern Brazil, and confirmed the most expansive and contiguous rhodolith bed in the world, covering about 20,900 km2. Distribution, extent, composition and structure of this bed were assessed with side scan sonar, remotely operated vehicles, and SCUBA. The mean rate of CaCO3 production was estimated from in situ growth assays at 1.07 kg m−2 yr−1, with a total production rate of 0.025 Gt yr−1, comparable to those of the world's largest biogenic CaCO3 deposits. These gigantic rhodolith beds, of areal extent equivalent to the Great Barrier Reef, Australia, are a critical, yet poorly understood component of the tropical South Atlantic Ocean. Based on the relatively high vulnerability of coralline algae to ocean acidification, these beds are likely to experience a profound restructuring in the coming decades

Some aspects of perturbation in the structure and biodiversity of the ecosystem of Lake Victoria (East Africa)

Dramatic changes in the Lake Victoria (East Africa) environment were observed after the introduction of the Nile perch (Lates niloticus) in the 1950s. An extraordinary spectrum of endemic haplochromine fishes, a result of intralacustrine adaptive radiation was reduced by massive species extinctions (ca. 65%) due in part to predation by Nile Perch. Such an abrupt destruction of natural diversity has never before been documented by scientists. Lake Victoria's haplochromine species flock comprised upwards of 400 species (5% of the world's known freshwater fishes), encompassing a remarkably wide trophic spectrum and constituting 83% of the lake's total fish biomass. The lot evolved in an isolated part of the Nile system since the formation of the lake basin about 750 × 103 years ago, but quite possibly as recently as 14 × 103 years ago, when most of the lake dried up. More than 50% of the haplochromine species (by number) were phytoplankton-zooplankton-detritus consumers; 55% of their biomass were detritivores and 27% zooplanktivores. The piscivore Nile perch (Lates niloticus) was first introduced into Lake Victoria in 1954. It underwent rapid population expansion in the 1980s, accompanied by haplochromine decline. Consequently, phytoplankton and detritus consumption by fishes was reduced. The biomass of the endemic Cyprinidae Rastrineobola argentea increased, as did its fishery, and predation pressure on zooplankton was therefore intensified. The population of the prawn Caridina niloticus became very dense, mostly in deep waters. The fishery and fish industry were altered fundamentally. Limnological changes suggesting eutrophication have been observed since 1960: hypolimnetic anoxia increased and the period of extensive vertical mixing was restricted to about one month per year; phytoplankton productivity increased and shifts from diatom to blue-green dominance occurred. Increased inputs of N (from the 1920s) and P (from the 1950s), induced through precipitation and human activity in the catchment area (agricultural and urban developments, deforestation, etc.) and high water levels accompanied by decline of available silicon, have persisted. Both top-down (Nile perch piscivory) and bottom-up (nutrient changes) influences enhanced eutrophication. The concurrent system changes in nutrient dynamics may have contributed an additional impact to the extinctions of haplochromine fishes

Species data

A listing of species found within all plot

Data from: Habitat patterns in tropical rain forests: a comparison of 105 plots in northwest Borneo

Understanding the maintenance of high tropical tree species diversity requires disentangling the effects of habitat vs. geographic distance. Using floristic, topographic, and soil nutrient data from 105 0.6-ha plots in mixed dipterocarp forest throughout Sarawak, Malaysian Borneo, we explore the degree to which floristic patterns are habitat-driven from local to landscape scales. We assess how the floristic influence of geographic distance vs. abiotic factors varies from local to regional scales. We employ several multivariate analytical techniques and perform a hierarchical clustering of the research plots using the Steinhaus index of floristic dissimilarity, as well as Mantel analyses on matrices of floristic, habitat, and geographic distance. These analyses indicate that floristic variation is more strongly correlated with habitat than with geographic distance on the regional scale. On the local-landscape to community scale, we find evidence of a resource threshold above which habitat effects weaken; that is, below the resource threshold floristic similarity between sites is dominated by habitat effects, while above the threshold floristic similarity between sites is dominated by geographic-distance effects. We also find evidence that topography and soil nutrients correlate in part independently with floristics. These results, together with previous studies in the Neotropics, emphasize that tree species distribution and community composition are variously influenced by the interplay of both habitat and dispersal-driven effects