Annual report on health monitoring of wild anadromous salmonids in Norway 2018 - Screening of migrating Atlantic salmon (Salmo salar) postsmolts from the Trondheim fjord for viral infections

Very few virus infections found in migrating postsmolts from the Trondheim Fjord Commissioned by the Norwegian Food Safety Authority, the Institute of Marine Research has studied the occurrence of several potential disease-causing viruses that are common in salmon farming in imigrating postsmolts from Trondheim fjord in 2016. The postsmolts were caught in the mouth of the fjord, which is a national salmon fjord without fish farming activity, and therefore it is unlikely that this fish is exposed to infections from salmon farming. The incidence of SAV, PRV1, ILAV and PMCV infections was tested using the real-time RT-PCR method. SAV, PRV1, ILAV were not detected in any of the postsmolts. Low concentration of PMCV was detected in a single fish. The results show that the occurrence of these viruses is very low in wild salmon postsmolts in this area of the fjord.publishedVersio

First identification of mycobacteriosis in Atlantic mackerel (Scomber scombrus)

Mycobacterium infection in fish is a well-known disease problem globally, mainly in the farming of ornamental fish or fish for food. Less is known about the prevalence, distribution and the effects such infections have on wild fish species. Presumptive mycobacteriosis has previously been observed in Atlantic mackerel (Scomber scombrus). Since 2018, there has been an increase in reports of granulomatous kidney disease in Atlantic mackerel with the suspicion of this being mycobacteriosis. A total of six individuals were sent to the Institute of Marine Research for further examination. They were caught in the Nordic Sea by either commercial fishing vessels or during the International Ecosystem Summer Survey in the Nordic Seas (IESSNS research cruise) between 2018 and 2020. Samples for both histological and molecular analysis were collected. Here, we detect a likely novel Mycobacterium species in tissue samples from Atlantic mackerel with this condition, on the basis of rDNA and protein gene sequences. The same unnamed bacterium seems to have been found in some Pacific marine fishes. The macroscopic and histological manifestation of the disease is described. Over the past years, there has been an increase in reports of mycobacteriosis worldwide and climate change has been suggested as one of the driving forces as these bacteria prefer warm water.publishedVersio

Making the best of lousy circumstances: The impact of salmon louse Lepeophtheirus salmonis on depth preference of sea trout Salmo trutta

Sea trout are known for seeking out sources of freshwater to rid themselves of salmon lice. However, the effect of natural haloclines in fjords on parasite dynamics is not well understood. We tagged 48 naturally infested wild sea trout with acoustic depth sensors. The fish were kept inside a small net-pen (4 × 4 × 5 m), 12 at a time, in western Norway during 4 separate time periods in spring 2017. The sea trout were relatively highly infested with sea lice (prevalence: 100%, mean ± SD: 68 ± 58 lice fish-1), and a relatively large proportion of the individuals did not survive the trials (25% mortality). The results show that temperature and light were the 2 most important factors explaining the vertical behaviour of the surviving trout. Mobile lice also had a significant effect on depth distribution, where fish with higher abundances of lice were observed at shallower depths. During the 7 d periods in the net-pen, total sea louse abundance decreased from a mean of 68 to 35 fish-1. Surface salinity explained this reduction better than the experienced salinity of the individual fish, suggesting that short-time exposure to very low salinities, rather than long-term exposure to moderate salinities, is the driving force behind the effect of haloclines on reduction in sea lice numbers.publishedVersio

Molecular tools for the detection and identification of Ichthyobodo spp. (Kinetoplastida), important fish parasites

-Ichthyobodo spp. are ectoparasitic flagellates of fish that may cause disease (ichthyobodosis), a common problem affecting the aquaculture industry worldwide. Ichthyobodosis in farmed fish is often associated with a range of other infectious agents and diagnosis in for example gill disease may be difficult. Sensitive and effective methods for detection and identification of Ichthyobodo spp. are needed to aid diagnosis of ichthyobodosis and epizootiological studies on Ichthyobodo spp. We have designed a specific quantitative real-time PCR assay targeting SSU rDNA for the detection of Ichthyobodo spp. infections. Also, several novel primer sets are presented for use in identification of Ichthyobodo spp. through PCR and sequencing. These PCR methods have been optimized and tested on samples from wild caught and farmed fish from different geographical areas in Norway. The real-time PCR assay has been tested for sensitivity and efficiency, and we present data demonstrating its use for absolute quantification of Ichthyobodo salmonis in tissue samples through RT-qPCR and qPCR. We demonstrate the use of the described set of molecular tools for the detection and sequencing of Ichthyobodo spp. from farmed and wild fish, and also show that they may aid the discovery of new Ichthyobodo species. The detection of light Ichthyobodo spp. infections through microscopy is time consuming and less sensitive compared to PCR methods. Initial real-time PCR testing and subsequent sequencing of positive samples is a powerful method that will increase diagnostic precision, aid carrier detection and promote species discoveries in the Ichthyobodonidae. Our preliminary observations indicate a high Ichthyobodo spp. diversity

Prevalence and genotypes of infectious salmon anaemia virus (ISAV) in returning wild Atlantic salmon (Salmo salar L.) in northern Norway

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Resurrection of genus Phocanema Myers, 1959, as a genus independent from Pseudoterranova Mozgovoĭ, 1953, for nematode species (Anisakidae) parasitic in pinnipeds and cetaceans, respectively

Species of the genus Pseudoterranova, infect kogiid cetaceans and pinnipeds. However, there is mounting molecular evidence that those from cetaceans and pinnipeds are not congeneric. Here, we provide further evidence of the non-monophyly of members of Pseudoterranova from phylogenetic analyses of the conserved nuclear LSU rDNA gene, entire ITS rDNA region and mtDNA cox2 gene, and identify morphological characters that may be used to distinguish the members of the two clades. We propose the resurrection of the genus Phocanema, with Ph. decipiens (sensu stricto) as the type species, to encompass Ph. decipiens, Ph. azarasi, Ph. bulbosa, Ph. cattani and Ph. krabbei, all parasites of pinnipeds. We propose to restrict the conception of genus Pseudoterranova, which now harbours two species infecting kogiid whales; Ps. kogiae (type species) and Ps. ceticola. Members of the genera Phocanema and Pseudoterranova differ by the shape and orientation of the lips, relative tail lengths, adult size, type of final host (pinniped vs. cetacean) and phylogenetic placement based on nuclear rDNA and mtDNA cox2 sequences.publishedVersio

A novel protist parasite, Salmoxcellia vastator n. gen., n. sp. (Xcelliidae, Perkinsozoa), infecting farmed salmonids in Norway

Background In Norway, x-cell parasites associated with disease in farmed salmonids have been known as a rare phenomenon for two decades. These parasites cause systemic infections in farmed rainbow trout (Oncorhynchus mykiss) and Atlantic salmon (Salmo salar), but have so far not been characterized and described. Methods The x-cells from several cases of diseased fish were studied using light and electron microscopy, and by phylogenetic analysis based on small subunit ribosomal RNA (SSU rRNA) gene sequences. Results We describe here the x-cell parasite as a new species in a new genus, Salmoxcellia vastator n. gen., n. sp. Phylogenetic analyses placed Salmoxcellia n. gen. together with Gadixcellia among the xcelliids, a group of perkinsozoan alveolates. The new genus and species were found to have vacuolate plasmodial x-cells filled with lipid droplets, and an electron-dense alveolar pellicle. Electron-dense cytoplasmic inclusions, which are characteristic of the other xcelliid genera Xcellia and Gadixcellia, are lacking in Salmoxcellia n. gen. These x-cell plasmodia divide by plasmotomy and occur as aggregates in the host tissues, particularly in blood-rich tissues such as those of the kidney, red musculature, heart and liver. Host reaction and the refractive lipid droplets in the x-cells result in S. vastator n. gen., n. sp. aggregates appearing as white patches in the tissues. Conclusions We describe a new genus and species of xcelliid protist parasites from two very important farmed fish species and provide molecular methods for detection. The new parasite is associated with disease, but more importantly it has a spoiling effect on farmed salmonid fillets, rendering them unsuitable for sale. Consequently, this parasite represents a threat to the aquaculture industry.publishedVersio

Redescription and phylogenetic position of Myxobolus ‘eglefini’ and Myxobolus platessae n. comb. (Myxosporea), parasites in the cartilage of some North Atlantic marine fishes, with notes on the phylogeny and classification of the Platysporina

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