The origin of seed photons for Comptonization in the black hole binary Swift J1753.5-0127

Aims. The black hole binary SWIFT J1753.5-0127 is providing a unique data set to study accretion flows. Various investigations of this system and of other black holes have not, however, led to an agreement on the accretion flow geometry or on the seed photon source for Comptonization during different stages of X-ray outbursts. We place constraints on these accretion flow properties by studying long-term spectral variations of this source. Methods. We performed phenomenological and self-consistent broad band spectral modeling of Swift J1753.5-0127 using quasi-simultaneous archived data from INTEGRAL/ISGRI, Swift/UVOT/XRT/BAT, RXTE/PCA/HEXTE and MAXI/GSC instruments. Results. We identify a critical flux limit, F \sim 1.5 \times 10^{-8} erg/cm^2/s, and show that the spectral properties of SWIFT J1753.5-0127 are markedly different above and below this value. Above the limit, during the outburst peak, the hot medium seems to intercept roughly 50 percent of the disk emission. Below it, in the outburst tail, the contribution of the disk photons reduces significantly and the entire spectrum from the optical to X-rays can be produced by a synchrotron-self-Compton mechanism. The long-term variations in the hard X-ray spectra are caused by erratic changes of the electron temperatures in the hot medium. Thermal Comptonization models indicate unreasonably low hot medium optical depths during the short incursions into the soft state after 2010, suggesting that non-thermal electrons produce the Comptonized tail in this state. The soft X-ray excess, likely produced by the accretion disk, shows peculiarly stable temperatures for over an order of magnitude changes in flux. Conclusions. The long-term spectral trends of SWIFT J1753.5-0127 are likely set by variations of the truncation radius and a formation of a hot, quasi-spherical inner flow in the vicinity of the black hole. (abridged)Comment: 16 pages, 8 figures, published in A&

Sentimentator : Gamifying Fine-grained Sentiment Annotation

Peer reviewe

Searching for X-ray sources in nearby late-type galaxies with low star formation rates

Late type non-starburst galaxies have been shown to contain X-ray emitting objects, some being ultraluminous X-ray sources. We report on XMM-Newton observations of 11 nearby, late-type galaxies previously observed with the Hubble Space Telescope (HST) in order to find such objects. We found 18 X-ray sources in or near the optical extent of the galaxies, most being point-like. If associated with the corresponding galaxies, the source luminosities range from $2 \times 10^{37}$ erg s$^{-1}$ to $6 \times 10^{39}$ erg s$^{-1}$. We found one ultraluminous X-ray source, which is in the galaxy IC 5052, and one source coincident with the galaxy IC 4662 with a blackbody temperature of $0.166 \pm 0.015$ keV that could be a quasi-soft source or a quiescent neutron star X-ray binary in the Milky Way. One X-ray source, XMMU J205206.0$-$691316, is extended and coincident with a galaxy cluster visible on an HST image. The X-ray spectrum of the cluster reveals a redshift of $z = 0.25 \pm 0.02$ and a temperature of 3.6$\pm$0.4 keV. The redshift was mainly determined by a cluster of Fe XXIV lines between the observed energy range $0.8-1.0$ keV.Comment: 8 pages, to appear in MNRA

Expanding hot flow in the black hole binary SWIFT J1753.5-0127: evidence from optical timing

We describe the evolution of optical and X-ray temporal characteristics during the outburst decline of the black hole X-ray binary SWIFT J1753.5-0127. The optical/X-ray cross-correlation function demonstrates a single positive correlation at the outburst peak, then it has multiple dips and peaks during the decline stage, which are then replaced by the precognition dip plus peak structure in the outburst tail. Power spectral densities and phase lags show a complex evolution, revealing the presence of intrinsically connected optical and X-ray quasi-periodic oscillations. For the first time, we quantitatively explain the evolution of these timing properties during the entire outburst within one model, the essence of which is the expansion of the hot accretion flow towards the tail of the outburst. The pivoting of the spectrum produced by synchrotron Comptonization in the hot flow is responsible for the appearance of the anti-correlation with the X-rays and for the optical quasi-periodic oscillations. Our model reproduces well the cross-correlation and phase lag spectrum during the decline stage, which could not be understood with any model proposed before.Comment: 13 pages, 11 figures, MNRAS submitte

REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform

Motivation: Proteins with solenoid repeats evolve more quickly than non-repetitive ones and their periodicity may be rapidly hidden at sequence level, while still evident in structure. In order to identify these repeats, we propose here a novel method based on a metric characterizing amino-acid properties (polarity, secondary structure, molecular volume, codon diversity, electric charge) using five previously derived numerical functions

Creating a Dataset for Multilingual Fine-grained Emotion-detection Using Gamification-based Annotation

This paper introduces a gamified framework for fine-grained sentiment analysis and emotion detection. We present a flexible tool, Sentimentator, that can be used for efficient annotation based on crowd sourcing and a selfperpetuating gold standard. We also present a novel dataset with multi-dimensional annotations of emotions and sentiments in movie subtitles that enables research on sentiment preservation across languages and the creation of robust multilingual emotion detection tools. The tools and datasets are public and opensource and can easily be extended and applied for various purposes.Peer reviewe

The December 2015 re-brightening of V404 Cyg: Variable absorption from the accretion disc outflow

In December 2015 the black hole binary V404 Cyg underwent a secondary outburst after the main June 2015 event. We monitored this re-brightening with the INTEGRAL and Swift satellites, and in this paper we report the results of the time-resolved spectral analysis of these data. The December outburst shared similar characteristics with the June one. The well sampled INTEGRAL light curve shows up to 10 Crab flares, which are separated by relatively weak non-flaring emission phases when compared to the June outburst. The spectra are well described by absorbed Comptonization models, with hard photon indices, $\Gamma \lesssim 2$, and significant detections of a high-energy cut-off only during the bright flares. This is in contrast to the June outburst, where the Comptonization models gave electron temperatures mostly in the 30--50 keV range, while some spectra were soft ($\Gamma \sim 2.5$) without signs of any spectral cut-off. Similarly to the June outburst, we see clear sings of a variable local absorber in the soft energy band covered by Swift/XRT and INTEGRAL/JEM-X, which causes rapid spectral variations observed during the flares. During one flare, both Swift and INTEGRAL captured V404 Cyg in a state where the absorber was nearly Compton thick, $N_\textrm{H} \approx 10^{24}\,\textrm{cm}^{-2}$, and the broad band spectrum was similar to obscured AGN spectra, as seen during the "plateaus" in the June outburst. We conclude that the spectral behaviour of V404 Cyg during the December outburst was analogous with the first few days of the June outburst, both having hard X-ray flares that were intermittently influenced by obscuration due to nearly Compton-thick outflows launched from the accretion disc.Comment: 9 pages, 6 figures, accepted to A&

Rapid spectral transition of the black hole binary V404 Cyg

During the June 2015 outburst of the black hole binary V404 Cyg, rapid changes in the X-ray brightness and spectra were common. The INTEGRAL monitoring campaign detected spectacular Eddington-limited X-ray flares, but also rapid variations at much lower flux levels. On 2015 June 21 at 20 h 50 min, the 3-10 keV JEM-X data as well as simultaneous optical data started to display a gradual brightening from one of these low-flux states. This was followed 15 min later by an order-of-magnitude increase of flux in the 20-40 keV IBIS/ISGRI light curve in just 15 s. The best-fitting model for both the pre- and post-transition spectra required a Compton-thick partially covering absorber. The absorber parameters remained constant, but the spectral slope varied significantly during the event, with the photon index decreasing from $\Gamma \approx 3.7$ to $\Gamma \approx 2.3$. We propose that the rapid 20-40 keV flux increase was either caused by a spectral state transition that was hidden from our direct view, or that there was a sudden reduction in the amount of Compton down-scattering of the primary X-ray emission in the disk outflow.Comment: 6 pages, 2 figures, accepted to A&

The repetitive structure of DNA clamps: An overlooked protein tandem repeat

Structured tandem repeats proteins (STRPs) are a specific kind of tandem repeat proteins characterized by a modular and repetitive three-dimensional structure arrangement. The majority of STRPs adopt solenoid structures, but with the increasing availability of experimental structures and high-quality predicted structural models, more STRP folds can be characterized. Here, we describe “Box repeats”, an overlooked STRP fold present in the DNA sliding clamp processivity factors, which has eluded classification although structural data has been available since the late 1990s. Each Box repeat is a β⍺βββ module of about 60 residues, which forms a class V “beads-on-a-string” type STRP. The number of repeats present in processivity factors is organism dependent. Monomers of PCNA proteins in both Archaea and Eukarya have 4 repeats, while the monomers of bacterial beta-sliding clamps have 6 repeats. This new repeat fold has been added to the RepeatsDB database, which now provides structural annotation for 66 Box repeat proteins belonging to different organisms, including viruses