Self-organized current transport through low angle grain boundaries in YBa2_2Cu3_3O7−δ_{7-\delta} thin films, studied magnetometrically

The critical current density flowing across low angle grain boundaries in YBa$_2$Cu$_3$O$_{7-\delta}$ thin films has been studied magnetometrically. Films (200 nm thickness) were deposited on SrTiO$_3$ bicrystal substrates containing a single [001] tilt boundary, with angles of 2, 3, 5, and 7 degrees, and the films were patterned into rings. Their magnetic moments were measured in applied magnetic fields up to 30 kOe at temperatures of 5 - 95 K; current densities of rings with or without grain boundaries were obtained from a modified critical state model. For rings containing 5 and 7 degree boundaries, the magnetic response depends strongly on the field history, which arises in large part from self-field effects acting on the grain boundary.Comment: 8 pages, including 7 figure

Chiral Baryon Fields in the QCD Sum Rule

We study the structure of local baryon fields using the method of QCD sum rule. We only consider the single baryon fields and calculate their operator product expansions. We find that the octet baryon fields belonging to the chiral representations [(3,3*)+(3*,3)] and [(8,1)+(1,8)] and the decuplet baryon fields belonging to the chiral representations [(3,6)+(6,3)] lead to the baryon masses which are consistent with the experimental data of ground baryon masses. We also calculate their decay constants, check our normalizations for baryon fields in PRD81:054002(2010) and find that they are well-defined.Comment: 12 pages, 6 figure, 1 table, accepted by EPJ

The transition form factors for semi-leptonic weak decays of J/ψJ/\psi in QCD sum rules

Within the Standard Model, we investigate the semi-leptonic weak decays of $J/\psi$. The various form factors of $J/\psi$ transiting to a single charmed meson ($D^{(*)}_{(d,s)}$) are studied in the framework of the QCD sum rules. These form factors fully determine the rates of the weak semi-leptonic decays of $J/\psi$ and provide valuable information about the non-perturbative QCD effects. Our results indicate that the decay rate of the semi-leptonic weak decay mode $J/\psi \to D^{(*)-}_{s}+e^{+}+\nu_{e}$ is at order of $10^{-10}$.Comment: 28 pages, 6 figures, revised version to be published in Eur.Phys.J.

HI in the Outskirts of Nearby Galaxies

The HI in disk galaxies frequently extends beyond the optical image, and can trace the dark matter there. I briefly highlight the history of high spatial resolution HI imaging, the contribution it made to the dark matter problem, and the current tension between several dynamical methods to break the disk-halo degeneracy. I then turn to the flaring problem, which could in principle probe the shape of the dark halo. Instead, however, a lot of attention is now devoted to understanding the role of gas accretion via galactic fountains. The current $\rm \Lambda$ cold dark matter theory has problems on galactic scales, such as the core-cusp problem, which can be addressed with HI observations of dwarf galaxies. For a similar range in rotation velocities, galaxies of type Sd have thin disks, while those of type Im are much thicker. After a few comments on modified Newtonian dynamics and on irregular galaxies, I close with statistics on the HI extent of galaxies.Comment: 38 pages, 17 figures, invited review, book chapter in "Outskirts of Galaxies", Eds. J. H. Knapen, J. C. Lee and A. Gil de Paz, Astrophysics and Space Science Library, Springer, in pres

A Method for Assaying Deubiquitinating Enzymes

A general method for the assay of deubiquitinating enzymes was described in detail using (125)I-labeled ubiquitin-fused αNH-MHISPPEPESEEEEEHYC (referred to as Ub-PESTc) as a substrate. Since the tyrosine residue in the PESTc portion of the fusion protein was almost exclusively radioiodinated under a mild labeling condition, such as using IODO-BEADS, the enzymes could be assayed directly by simple measurement of the radioactivity released into acid soluble products. Using this assay protocol, we could purify six deubiquitinating enzymes from chick skeletal muscle and yeast and compare their specific activities. Since the extracts of E. coli showed little or no activity against the substrate, the assay protocol should be useful for identification and purification of eukaryotic deubiquitinating enzymes cloned and expressed in the cells

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

We describe MIP-1 and MIP-2, novel paralogous C. elegans germ granule components that interact with the intrinsically disordered MEG-3 protein. These proteins promote P granule condensation, form granules independently of MEG-3 in the postembryonic germ line, and balance each other in regulating P granule growth and localization. MIP-1 and MIP-2 each contain two LOTUS domains and intrinsically disordered regions and form homo- and heterodimers. They bind and anchor the Vasa homolog GLH-1 within P granules and are jointly required for coalescence of MEG-3, GLH-1, and PGL proteins. Animals lacking MIP-1 and MIP-2 show temperature-sensitive embryonic lethality, sterility, and mortal germ lines. Germline phenotypes include defects in stem cell self-renewal, meiotic progression, and gamete differentiation. We propose that these proteins serve as scaffolds and organizing centers for ribonucleoprotein networks within P granules that help recruit and balance essential RNA processing machinery to regulate key developmental transitions in the germ line

Landslide susceptibility mapping in North-East Wales

This is an Accepted Manuscript of an article published by Taylor & Francis in Geomatics, Natural Hazards and Risk on 4th October 2011, available online: https://doi.org/10.1080/19475705.2011.600778In North-East Wales, United Kingdom, slope instability is a known environmental hazard which has caused significant damage to the built environment in the recent past. This paper reports on the creation of a digital landslide inventory for North-East Wales and the use of a Geographical Information System (GIS) to create landslide susceptibility models that are applicable to landslide hazard management in the area. The research undertaken has resulted in the most comprehensive landslide inventory of North-East Wales to date, documenting 430 landslides within the area. Landslide susceptibility models created within a GIS using a statistical (multiple logistic regression) approach, divide the landscape of North-East Wales into areas of ‘low’, ‘moderate’ and ‘high’ landslide susceptibility using calculated probability values. These models indicate that 8% of the surface exposure of drift deposits and 12% of the area of solid geology is of high or very high susceptibility to slope instability. Validation tests have demonstrated the accuracy of these models and their potential value in a predictive sense. The digital landslide database and susceptibility models created are readily available to interested stakeholders, and may be useful tools in land-use planning, development of civil contingency plans and as guidance for the insurance industry

Evidence of Color Coherence Effects in W+jets Events from ppbar Collisions at sqrt(s) = 1.8 TeV

We report the results of a study of color coherence effects in ppbar collisions based on data collected by the D0 detector during the 1994-1995 run of the Fermilab Tevatron Collider, at a center of mass energy sqrt(s) = 1.8 TeV. Initial-to-final state color interference effects are studied by examining particle distribution patterns in events with a W boson and at least one jet. The data are compared to Monte Carlo simulations with different color coherence implementations and to an analytic modified-leading-logarithm perturbative calculation based on the local parton-hadron duality hypothesis.Comment: 13 pages, 6 figures. Submitted to Physics Letters

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types