Feature Identification in Time Series Data Sets

We present a computationally inexpensive, flexible feature identification method which uses a comparison of time series to identify a rank-ordered set of features in geophysically-sourced data sets. Many physical phenomena perturb multiple physical variables nearly simultaneously, and so features are identified as time periods in which there are local maxima of absolute deviation in all time series. Unlike other available methods, this method allows the analyst to tune the method using their knowledge of the physical context. The method is applied to a data set from a moored array of instruments deployed in the coastal environment of Monterey Bay, California, and a data set from sensors placed within the submerged Yax Chen Cave System in Tulum, Quintana Roo, Mexico. These example data sets demonstrate that the method allows for the automated identification of features which are worthy of further study

Observations of nonlinear internal waves at a persistent coastal upwelling front

We collected high-resolution observations of nonlinear internal waves (NLIWs) at a persistent upwelling front in the shallow coastal environment (~20 m) of northern Monterey Bay, CA. The coastal upwelling front forms between recently upwelled waters and warmer stratified waters that are trapped in the bay (upwelling shadow). The front propagates up and down the coast in the along-shore direction as a buoyant plume front due to modulation by strong diurnal wind forcing. The evolution of the coastal upwelling front, and the subsequent modulation of background environmental conditions, is examined using both individual events and composite day averages. We demonstrate that regional-scale upwelling and local diurnal wind forcing are key components controlling local stratification and the formation of internal wave guides that allow for high-frequency internal wave activity. Finally, we discuss the ability of theoretical models to describe particularly large-amplitude internal waves that exist in the presence of a strong background shear and test a fully nonlinear model (i.e., the Dubreil–Jacotin–Long equation)

Interaction of a mode-2 internal solitary wave with narrow isolated topography

This research was supported by the Natural Sciences and Engineering Research Council of Canada through a Discovery Grant (MS), and the Government of Ontario through a Queen Elizabeth II Graduate Scholarship in Science and Technology (DD). The experimental work was conducted at The University of Dundee by DD and MC with the aid of grants provided by The University of Dundee, the University of St Andrews, and the University of Waterloo.Numerical and experimental studies of the transit of a mode-2 internal solitary wave over an isolated ridge are presented. All studies used a quasi-two-layer fluid with a pycnocline centred at the mid-depth. The wave amplitude and total fluid depth were both varied, while the topography remained fixed. The strength of the interaction between the internal solitary waves and the hill was found to be characterized by three regimes: weak, moderate, and strong interactions. The weak interaction exhibited negligible wave modulation and bottom surface stress. The moderate interaction generated weak and persistent vorticity in the lower layer, in addition to negligible wave modulation. The strong interaction clearly showed material from the trapped core of the mode-2 wave extracted in the form of a thin filament while generating a strong vortex at the hill. A criterion for the strength of the interaction was found by non-dimensionalizing the wave amplitude by the lower layer depth, a/ℓ. A passive tracer was used to measure the conditions for resuspension of boundary material due to the interaction. The speed and prevalence of cross boundary layer transport increased with a/ℓ.PostprintPeer reviewe

Nonlinear interfacial waves in a constant-vorticity planar flow over variable depth

Exact Lagrangian in compact form is derived for planar internal waves in a two-fluid system with a relatively small density jump (the Boussinesq limit taking place in real oceanic conditions), in the presence of a background shear current of constant vorticity, and over arbitrary bottom profile. Long-wave asymptotic approximations of higher orders are derived from the exact Hamiltonian functional in a remarkably simple way, for two different parametrizations of the interface shape.Comment: revtex, 4.5 pages, minor corrections, summary added, accepted to JETP Letter

Block of NMDA receptor channels by endogenous neurosteroids: implications for the agonist induced conformational states of the channel vestibule

N-methyl-D-aspartate receptors (NMDARs) mediate synaptic plasticity, and their dysfunction is implicated in multiple brain disorders. NMDARs can be allosterically modulated by numerous compounds, including endogenous neurosteroid pregnanolone sulfate. Here, we identify the molecular basis of the use-dependent and voltage-independent inhibitory effect of neurosteroids on NMDAR responses. The site of action is located at the extracellular vestibule of the receptor's ion channel pore and is accessible after receptor activation. Mutations in the extracellular vestibule in the SYTANLAAF motif disrupt the inhibitory effect of negatively charged steroids. In contrast, positively charged steroids inhibit mutated NMDAR responses in a voltage-dependent manner. These results, in combination with molecular modeling, characterize structure details of the open configuration of the NMDAR channel. Our results provide a unique opportunity for the development of new therapeutic neurosteroid-based ligands to treat diseases associated with dysfunction of the glutamate system