Pervasive gaps in Amazonian ecological research

Biodiversity loss is one of the main challenges of our time,1,2 and attempts to address it require a clear un derstanding of how ecological communities respond to environmental change across time and space.3,4 While the increasing availability of global databases on ecological communities has advanced our knowledge of biodiversity sensitivity to environmental changes,5–7 vast areas of the tropics remain understudied.8–11 In the American tropics, Amazonia stands out as the world’s most diverse rainforest and the primary source of Neotropical biodiversity,12 but it remains among the least known forests in America and is often underrepre sented in biodiversity databases.13–15 To worsen this situation, human-induced modifications16,17 may elim inate pieces of the Amazon’s biodiversity puzzle before we can use them to understand how ecological com munities are responding. To increase generalization and applicability of biodiversity knowledge,18,19 it is thus crucial to reduce biases in ecological research, particularly in regions projected to face the most pronounced environmental changes. We integrate ecological community metadata of 7,694 sampling sites for multiple or ganism groups in a machine learning model framework to map the research probability across the Brazilian Amazonia, while identifying the region’s vulnerability to environmental change. 15%–18% of the most ne glected areas in ecological research are expected to experience severe climate or land use changes by 2050. This means that unless we take immediate action, we will not be able to establish their current status, much less monitor how it is changing and what is being lostinfo:eu-repo/semantics/publishedVersio

Genome of Herbaspirillum seropedicae Strain SmR1, a Specialized Diazotrophic Endophyte of Tropical Grasses

The molecular mechanisms of plant recognition, colonization, and nutrient exchange between diazotrophic endophytes and plants are scarcely known. Herbaspirillum seropedicae is an endophytic bacterium capable of colonizing intercellular spaces of grasses such as rice and sugar cane. The genome of H. seropedicae strain SmR1 was sequenced and annotated by The Paraná State Genome Programme—GENOPAR. The genome is composed of a circular chromosome of 5,513,887 bp and contains a total of 4,804 genes. The genome sequence revealed that H. seropedicae is a highly versatile microorganism with capacity to metabolize a wide range of carbon and nitrogen sources and with possession of four distinct terminal oxidases. The genome contains a multitude of protein secretion systems, including type I, type II, type III, type V, and type VI secretion systems, and type IV pili, suggesting a high potential to interact with host plants. H. seropedicae is able to synthesize indole acetic acid as reflected by the four IAA biosynthetic pathways present. A gene coding for ACC deaminase, which may be involved in modulating the associated plant ethylene-signaling pathway, is also present. Genes for hemagglutinins/hemolysins/adhesins were found and may play a role in plant cell surface adhesion. These features may endow H. seropedicae with the ability to establish an endophytic life-style in a large number of plant species

Pervasive gaps in Amazonian ecological research

Biodiversity loss is one of the main challenges of our time,1,2 and attempts to address it require a clear understanding of how ecological communities respond to environmental change across time and space.3,4 While the increasing availability of global databases on ecological communities has advanced our knowledge of biodiversity sensitivity to environmental changes,5,6,7 vast areas of the tropics remain understudied.8,9,10,11 In the American tropics, Amazonia stands out as the world's most diverse rainforest and the primary source of Neotropical biodiversity,12 but it remains among the least known forests in America and is often underrepresented in biodiversity databases.13,14,15 To worsen this situation, human-induced modifications16,17 may eliminate pieces of the Amazon's biodiversity puzzle before we can use them to understand how ecological communities are responding. To increase generalization and applicability of biodiversity knowledge,18,19 it is thus crucial to reduce biases in ecological research, particularly in regions projected to face the most pronounced environmental changes. We integrate ecological community metadata of 7,694 sampling sites for multiple organism groups in a machine learning model framework to map the research probability across the Brazilian Amazonia, while identifying the region's vulnerability to environmental change. 15%–18% of the most neglected areas in ecological research are expected to experience severe climate or land use changes by 2050. This means that unless we take immediate action, we will not be able to establish their current status, much less monitor how it is changing and what is being lost

Pervasive gaps in Amazonian ecological research

Biodiversity loss is one of the main challenges of our time,1,2 and attempts to address it require a clear understanding of how ecological communities respond to environmental change across time and space.3,4 While the increasing availability of global databases on ecological communities has advanced our knowledge of biodiversity sensitivity to environmental changes,5,6,7 vast areas of the tropics remain understudied.8,9,10,11 In the American tropics, Amazonia stands out as the world's most diverse rainforest and the primary source of Neotropical biodiversity,12 but it remains among the least known forests in America and is often underrepresented in biodiversity databases.13,14,15 To worsen this situation, human-induced modifications16,17 may eliminate pieces of the Amazon's biodiversity puzzle before we can use them to understand how ecological communities are responding. To increase generalization and applicability of biodiversity knowledge,18,19 it is thus crucial to reduce biases in ecological research, particularly in regions projected to face the most pronounced environmental changes. We integrate ecological community metadata of 7,694 sampling sites for multiple organism groups in a machine learning model framework to map the research probability across the Brazilian Amazonia, while identifying the region's vulnerability to environmental change. 15%–18% of the most neglected areas in ecological research are expected to experience severe climate or land use changes by 2050. This means that unless we take immediate action, we will not be able to establish their current status, much less monitor how it is changing and what is being lost

The “New Transamazonian Highway”: BR-319 and Its Current Environmental Degradation

The Brazilian government intends to complete the paving of the BR-319 highway, which connects Porto Velho in the deforestation arc region with Manaus in the middle of the Amazon Forest. This paving is being planned despite environmental legislation, and there is concern that its effectiveness will cause additional deforestation, threatening large portions of forest, conservation units (CUs), and indigenous lands (ILs) in the surrounding areas. In this study, we evaluated environmental degradation along the BR-319 highway from 2008 to 2020 and verified whether highway maintenance has contributed to deforestation. For this purpose, we created a 20 km buffer adjacent to the BR-319 highway and evaluated variables extracted from remote sensing information between 2008 and 2020. Fire foci, burned areas, and rainfall data were used to calculate a drought index using statistical tests for a time series. Furthermore, these were related to data on deforestation, CUs, and ILs using principal component analysis and Pearson’s correlation. Our results showed that 743 km2 of forest was deforested during the period evaluated, most of which occurred in the last four years. A total of 16,472 fire foci were identified. Both deforestation and fire foci occurred mainly outside the CUs and ILs. The most affected areas were close to capital cities, and after resuming road maintenance in 2015, deforestation increased outside the capital cities. Current government policy for Amazon occupation promotes deforestation and will compromise Brazil’s climate goals of reducing greenhouse gas (GHG) emissions and deforestation

The “New Transamazonian Highway”: BR-319 and Its Current Environmental Degradation

The Brazilian government intends to complete the paving of the BR-319 highway, which connects Porto Velho in the deforestation arc region with Manaus in the middle of the Amazon Forest. This paving is being planned despite environmental legislation, and there is concern that its effectiveness will cause additional deforestation, threatening large portions of forest, conservation units (CUs), and indigenous lands (ILs) in the surrounding areas. In this study, we evaluated environmental degradation along the BR-319 highway from 2008 to 2020 and verified whether highway maintenance has contributed to deforestation. For this purpose, we created a 20 km buffer adjacent to the BR-319 highway and evaluated variables extracted from remote sensing information between 2008 and 2020. Fire foci, burned areas, and rainfall data were used to calculate a drought index using statistical tests for a time series. Furthermore, these were related to data on deforestation, CUs, and ILs using principal component analysis and Pearson’s correlation. Our results showed that 743 km2 of forest was deforested during the period evaluated, most of which occurred in the last four years. A total of 16,472 fire foci were identified. Both deforestation and fire foci occurred mainly outside the CUs and ILs. The most affected areas were close to capital cities, and after resuming road maintenance in 2015, deforestation increased outside the capital cities. Current government policy for Amazon occupation promotes deforestation and will compromise Brazil’s climate goals of reducing greenhouse gas (GHG) emissions and deforestation