Routing in the Space Internet: A contact graph routing tutorial

A Space Internet is possible, as long as the delay and disruption challenges imposed by the space environment are properly tackled. Because these conditions are not well addressed by terrestrial Internet, more capable Delay-Tolerant Networking (DTN) protocols and algorithms are being developed. In particular, the principles and techniques for routing among ground elements and spacecraft in near-Earth orbit and deep-space are enacted in the Contact Graph Routing (CGR) framework. CGR blends a set of non-trivial algorithm adaptations, space operations concepts, time-dynamic scheduling, and specific graph models. The complexity of that framework suggests a need for a focused discussion to facilitate its direct and correct apprehension. To this end, we present an in-depth tutorial that collects and organizes first-hand experience on researching, developing, implementing, and standardizing CGR. Content is laid out in a structure that considers the planning, route search and management, and forwarding phases bridging ground and space domains. We rely on intuitive graphical examples, supporting code material, and references to flight-grade CGR implementations details where pertinent. We hope this tutorial will serve as a valuable resource for engineers and that researchers can also apply the insights presented here to topics in DTN research.Fil: Fraire, Juan Andres. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas, Físicas y Naturales; Argentina. Universitat Saarland; AlemaniaFil: De Jonckère, Olivier. Technische Universität Dresden; AlemaniaFil: Burleigh, Scott C.. California Institute of Technology; Estados Unido

Exploring Light-Sensitive Nanocarriers for Simultaneous Triggered Antibiotic Release and Disruption of Biofilms Upon Generation of Laser-Induced Vapor Nanobubbles

Impaired penetration of antibiotics through bacterial biofilms is one of the reasons for failure of antimicrobial therapy. Hindered drug diffusion is caused on the one hand by interactions with the sticky biofilm matrix and on the other hand by the fact that bacterial cells are organized in densely packed clusters of cells. Binding interactions with the biofilm matrix can be avoided by encapsulating the antibiotics into nanocarriers, while interfering with the integrity of the dense cell clusters can enhance drug transport deep into the biofilm. Vapor nanobubbles (VNB), generated from laser irradiated nanoparticles, are a recently reported effective way to loosen up the biofilm structure in order to enhance drug transport and efficacy. In the present study, we explored if the disruptive force of VNB can be used simultaneously to interfere with the biofilm structure and trigger antibiotic release from light-responsive nanocarriers. The antibiotic tobramycin was incorporated in two types of light-responsive nanocarriers—liposomes functionalized with gold nanoparticles (Lip-AuNP) and graphene quantum dots (GQD)—and their efficacy was evaluated on Pseudomonas aeruginosa biofilms. Even though the anti-biofilm efficacy of tobramycin was improved by liposomal encapsulation, electrostatic functionalization with 70 nm AuNP unfortunately resulted in premature leakage of tobramycin in a matter of hours. Laser-irradiation consequently did not further improve P. aeruginosa biofilm eradication. Adsorption of tobramycin to GQD, on the other hand, did result in a stable formulation with high encapsulation efficiency, without burst release of tobramycin from the nanocarriers. However, even though laser-induced VNB formation from GQD resulted in biofilm disruption, an enhanced anti-biofilm effect was not achieved due to tobramycin not being efficiently released from GQD. Even though this study was unsuccessful in designing suitable nanocarriers for simultaneous biofilm disruption and light-triggered release of tobramycin, it provides insights into the difficulties and challenges that need to be considered for future developments in this regard

Exploring Light-Sensitive Nanocarriers for Simultaneous Triggered Antibiotic Release and Disruption of Biofilms Upon Generation of Laser-Induced Vapor Nanobubbles

Impaired penetration of antibiotics through bacterial biofilms is one of the reasons for failure of antimicrobial therapy. Hindered drug diffusion is caused on the one hand by interactions with the sticky biofilm matrix and on the other hand by the fact that bacterial cells are organized in densely packed clusters of cells. Binding interactions with the biofilm matrix can be avoided by encapsulating the antibiotics into nanocarriers, while interfering with the integrity of the dense cell clusters can enhance drug transport deep into the biofilm. Vapor nanobubbles (VNB), generated from laser irradiated nanoparticles, are a recently reported effective way to loosen up the biofilm structure in order to enhance drug transport and efficacy. In the present study, we explored if the disruptive force of VNB can be used simultaneously to interfere with the biofilm structure and trigger antibiotic release from light-responsive nanocarriers. The antibiotic tobramycin was incorporated in two types of light-responsive nanocarriers—liposomes functionalized with gold nanoparticles (Lip-AuNP) and graphene quantum dots (GQD)—and their efficacy was evaluated on Pseudomonas aeruginosa biofilms. Even though the anti-biofilm efficacy of tobramycin was improved by liposomal encapsulation, electrostatic functionalization with 70 nm AuNP unfortunately resulted in premature leakage of tobramycin in a matter of hours. Laser-irradiation consequently did not further improve P. aeruginosa biofilm eradication. Adsorption of tobramycin to GQD, on the other hand, did result in a stable formulation with high encapsulation efficiency, without burst release of tobramycin from the nanocarriers. However, even though laser-induced VNB formation from GQD resulted in biofilm disruption, an enhanced anti-biofilm effect was not achieved due to tobramycin not being efficiently released from GQD. Even though this study was unsuccessful in designing suitable nanocarriers for simultaneous biofilm disruption and light-triggered release of tobramycin, it provides insights into the difficulties and challenges that need to be considered for future developments in this regard

Risk Estimation in COVID-19 Contact Tracing Apps

In the context of COVID-19, contact tracing has shown its value as a tool for contention of the pandemic. In addition to its paper based form, contact tracing can be carried out in a more scalable and faster way by using digital apps. Mobile phones can record digital signals emitted by communication and sensing technologies, enabling the identification of risky contacts between users. Factors such as proximity, encounter duration, environment, ventilation, and the use (or not) of protective measures contribute to the probability of contagion. Estimation of these factors from the data collected by phones remains a challenge. In this work in progress we describe some of the challenges of digital contact tracing, the type of data that can be collected with mobile phones and focus particularly on the problem of proximity estimation using Bluetooth Low Energy (BLE) signals. Specifically, we use machine learning models fed with different combinations of statistical features derived from the BLE signal and study how improvements in accuracy can be obtained with respect to reference models currently in use.Sociedad Argentina de Informática e Investigación Operativ

Rational Design of Plasmonic Nanostructures for Biomolecular Detection: Interplay between Theory and Experiments

In this work, we report a simple strategy to obtain ultrasensitive SERS nanostructures by self-assembly and bioconjugation of Au nanospheres (NSs). Homodimer aggregates with an interparticle gap of around 8 nm are generated in aqueous dispersions by the highly specific molecular recognition of biotinylated Au NSs to streptavidin (STV), while random Au NS aggregates with a gap of 5 nm are formed in the absence of STV due to hydrogen bonding among biotinylated NSs. Both types of aggregates depict SERS analytical enhancement factors (AEF) of around 10⁷ and the capability to detect biotin concentrations lower than 1 × 10^–12 M. Quite interesting, the AEF for an external analyte, Rhodamine 6G (RH6G), using the dimer aggregates is 1 order of magnitude greater (10⁵) than using random aggregates (around 10⁴). The dependence on the wavelength and the differences of the AEF for Au random aggregates and dimers are rationalized with rigorous electrodynamic simulations. The dimers obtained afford a new type of an <i>in situ</i> self-calibrated and reliable SERS substrate where biotinylated molecules can selectively be “trapped” by STV and located in the nanogap enhanced plasmonic field. Using this concept, powerful molecular-recognition-based SERS assays can be carried out. The capability of the dimeric structures for analytical applications is demonstrated using SPR spectroscopy to detect biotinylated immunoglobulin G at very low concentrations

Networking in Interstellar Dimensions: Communicating with TRAPPIST-1

The recent discovery of potentially habitable planets orbiting the TRAPPIST-1 system intensified interest in interstellar exploration. In these challenging mission concepts, communication protocols would need to cope with unprecedented signal propagation delays. In this work, we propose and explore Delay Tolerant Networking (DTN) technologies and analyze in a case study based on the TRAPPIST-1. Results suggests that DTN protocols features could become a valuable means to achieve data delivery in future interstellar networks.Fil: Fraire, Juan Andres. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba; Argentina. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Departamento de Electrónica. Laboratorio de Comunicaciones Digitales; ArgentinaFil: Feldmann, Marius. Technische Universität Dresden; AlemaniaFil: Walter, Felix. Technische Universität Dresden; AlemaniaFil: Fantino, Elena. Khalifa University Of Science And Technology; Emiratos Arabes UnidosFil: Burleigh, Scott C.. California Institute of Technology; Estados Unido

Enzyme-Free Immunoassay Using Silver Nanoparticles for Detection of Gliadin at Ultralow Concentrations

Determination of biomarkers in clinical or food samples is of crucial importance for monitoring, prevention, and care of public health. The standard procedure used for this purpose is the enzyme-linked immunosorbent assay (ELISA), which makes use of the specific antibody-antigen biorecognition and the catalytic effect of the enzymes. One of the main shortcomings of this technique is the use of enzymes that often present low chemical and thermal stabilities compared to other chemicals. Other drawbacks include the nonspecific binding process that could lead to false-positive results, the use of relatively large amounts of the sample, and the number of time-consuming steps involved. Recently, an enzyme-free and ultrasensitive analytical method for antigen detection denoted as intensity depletion immunolinked assay (IDILA) has been proposed by our laboratory. The assay is based on the inhibition to form Ag nanosphere dimers linked by a specific antibody in the presence of the corresponding antigen. In this work, we go a step further demonstrating how the performance of this method could be improved by using silver nanoparticles (Ag NPs) of different diameters (58 and 78 nm). The experiments are performed for detecting gliadin, an antigen of utmost importance in celiac disease, and the results are compared with ELISA, the standard technique homologated by the Food Codex Alimentarius. It is found that the IDILA assay could be around 1000 or 10 000 times more sensitive than ELISA, also having lower limits of detection, depending on the conditions explored (fraction of dimers and Ag NP diameter). Using the appropriate conditions, the IDILA assay is shown to be able to detect femtomolar concentrations of the antigen, besides being robust, reliable, cheap, rapid (around 2 h), and of easy implementation using the standard equipment and biomolecular reagents used for the ELISA assay.Fil: Mercadal, Pablo Agustin. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Departamento de Fisicoquímica; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; ArgentinaFil: Fraire, Juan Carlos. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Departamento de Fisicoquímica; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; ArgentinaFil: Motrich, Ruben Dario. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; ArgentinaFil: Coronado, Eduardo A.. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Departamento de Fisicoquímica; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; Argentin

Cluster Size Effects in the Surface-Enhanced Raman Scattering Response of Ag and Au Nanoparticle Aggregates: Experimental and Theoretical Insight

In this work we report the spectral evolution of the surface-enhanced Raman scattering (SERS) response of biotin molecules that generate the assembly of Ag and Au nanospheres (NSs) into clusters with controlled interparticle gaps during the aggregation process. The experiments are analyzed using rigorous near-field electrodynamic calculations of the enhancement produced in a close-packed cluster with a different number of NSs. Two kinetic mechanisms during the NS aggregation were identified which give rise to a different cluster size distribution and as a consequence to a different SERS response. It is found that during NS aggregation there is an initial fast growth of the SERS signals followed by a decay that reaches an almost constant value at relatively long times. These results are qualitatively explained by the trends observed in the electrodynamics calculations of the near-field enhancement as a function of the cluster size, which highlights the critical role played by radiation damping as the size of the cluster increases for small clusters (dimers and trimers), in contrast with the behavior observed for clusters with a relative greater number of particles where the decrease of the near-field enhancement is less significant. In addition, a general procedure is presented that makes it possible to perform a suitable comparison of the SERS response for tight-compact clusters, in the limit of large clusters, as long as the wavelength range of the SERS response is almost size independent. This procedure is tested for Ag and Au nanoaggregates generated in solution formed by spheres of different size, at an almost constant interparticle separation. It was found that even there are differences between the analytic enhancement factor and the calculated enhancement predicted by the electrodynamic theory in the large cluster size limit, and the trends in the SERS response of the biotin molecules are qualitatively explained by the electromagnetic (EM) mechanism for both Ag and Au clusters. These discrepancies could be indicative of a chemical contribution to the global SERS response, but a rigorous assessment of this mechanism would require additional theoretical calculations supported by experiments. Notwithstanding, the SERS enhancement results obtained with noncovalent bonded dye molecules (Coumarin 440 and Rhodamine B) that are randomly distributed in the clusters as Raman reporters, using the same large clusters as substrates (linked by biotin molecules), are in fairly good quantitative agreement with the electrodynamics model of the average SERS enhancement

Identification, Localization, and Quantification of Neuronal Cell Membrane Receptors with Plasmonic Probes: Role of Protein Kinase D1 in Their Distribution

Detecting, imaging, and being able to localize the distribution of several cell membrane receptors on a single neuron are very important topics in neuroscience research. In the present work, the distribution of metabotropic glutamate receptor 1a (mGluR1a) density on neuron cells on subcellular length scales is determined by evaluating the role played by protein kinase D1 (PKD1) in the trafficking of membrane proteins, comparing the distribution of mGluR1a in experiments performed in endogenous PKD1 expression with those in the presence of kinase-inactive protein kinase D1 (PKD1-kd). The localization, distribution, and density of cell surface mGluR1a were evaluated using 90 nm diameter Au nanoparticle (NP) probes specifically functionalized with a high-affinity and multivalent labeling function, which allows not only imaging NPs where this receptor is present but also quantifying by optical means the NP density. This is so because the NP generates a density (ρ)-dependent SERS response that facilitated a spatial mapping of the mGluR1a density distribution on subcellular length scales (dendrites and axons) in an optical microscope. The measured ρ values were found to be significantly higher on dendrites than on axons for endogenous PKD1, while an increase of ρ on axons was observed when PKD1 is altered. The spatial distribution of the NP immunolabels through scanning electron microscopy (SEM) confirmed the results obtained by fluorescence bright-field analysis and dark-field spectroscopy and provided additional structural details. In addition, it is shown using electrodynamic simulations that SERS spectroscopy could be a very sensitive tool for the spatial mapping of cell membrane receptors on subcellular length scales, as SERS signals are almost linearly dependent on NP density and therefore give indirect information on the distribution of cell membrane proteins. This result is important since the calibration of the ρ-dependent near-field enhancement of the Au immunolabels through correlation of SERS and SEM paves the way toward quantitative immunolabeling studies of cell membrane proteins involved in neuron polarity. From the molecular biology point of view, this study shows that in cultured hippocampal pyramidal cells mGluR1a is predominantly transported to dendrites and excluded from axons. Expression of kinase-inactive protein kinase D1 (PKD1-kd) dramatically and selectively alters the intracellular trafficking and membrane delivery of mGluR1a-containing vesicles