Effect of previous handling experiences on responses of dairy calves to routine husbandry procedures

The nature of human–animal interactions is an important factor contributing to animal welfare and productivity. Reducing stress during routine husbandry procedures is likely to improve animal welfare. We examined how the type of early handling of calves affected responses to two common husbandry procedures, ear-tagging and disbudding. Forty Holstein–Friesian calves (n = 20/treatment) were exposed to one of two handling treatments daily from 1 to 5 weeks of age: (1) positive (n = 20), involving gentle handling (soft voices, slow movements, patting), and (2) negative (n = 20), involving rough handling (rough voices, rapid movements, pushing). Heart rate (HR), respiration rate (RR) and behaviour (activity, tail flicking) were measured before and after ear-tagging and disbudding (2 days apart). Cortisol was measured at −20 (baseline), 20 and 40 min relative to disbudding time. There were no significant treatment differences in HR, RR or behaviour in response to either procedure. However, the following changes occurred across both treatment groups. HR increased after disbudding (by 14.7 ± 4.0 and 18.6 ± 3.8 bpm, positive and negative, respectively; mean ± s.e.m.) and ear-tagging (by 8.7 ± 3.1 and 10.3 ± 3.0 bpm, positive and negative, respectively). After disbudding, there was an increase in RR (by 8.2 ± 3.4 and 9.3 ± 3.4 breaths/min, positive and negative, respectively), overall activity (by 9.4 ± 1.2 and 9.9 ± 1.3 frequency/min, positive and negative, respectively) and tail flicking (by 13.2 ± 2.8 and 11.2 ± 3.0 frequency/min, positive and negative, respectively), and cortisol increased from baseline at 20 min post procedure (by 10.3 ± 1.1 and 12.3 ± 1.1 nmol/l positive and negative, respectively). Although we recorded significant changes in calf responses during ear-tagging and disbudding, the type of prior handling had no effect on responses. The effects of handling may have been overridden by the degree of pain and/or stress associated with the procedures. Further research is warranted to understand the welfare impact and interaction between previous handling and responses to husbandry procedures

Complex mosaic of sexual dichromatism and monochromatism in Pacific robins results from both gains and losses of elaborate coloration

Pacific robins exhibit one of the most complex range-wide mosaics of sexual dichromatism and monochromatism. The evolutionary origins of this geographic mosaic remain poorly understood despite long-standing interest from ornithologists, and its influential role in the development of Ernst Mayr’s theories on speciation and the 'Biological Species Concept'. One factor limiting our understanding of the evolution of sexual plumage variation in Pacific robins is a lack of well-resolved taxon boundaries and phylogenetic relationships in the group. Here, we use primarily historical museum specimens to obtain dense sampling of mtDNA, nuclear DNA, plumage color and morphometrics from all named taxa in the radiation in order to infer taxon boundaries and relationships. We use these data to test hypotheses about colonization history, plumage evolution and reduced island dichromatism. Our data show that the Pacific robin radiation comprises four distinct lineages, which warrant recognition as separate species – the previously recognized Norfolk robin P. multicolor and redcapped robin P. goodenovii, and two new species we propose to name: ‘Solomon robin’ P. polymorpha Mayr, 1934 for the populations on Solomon and Bougainville Islands, and ‘Mayr’s robin’ P. pusilla Peale, 1848 (in honor of Ernst Mayr’s detailed work on the southwest Pacific robins) for the populations on Vanuatu, Fiji and Samoa. Our data suggest that the common ancestor of the entire Pacific robin radiation was most likely sexually dichromatic and that the radiation-wide mosaic of sexual plumage color arose via repeated losses of elaborate plumage in males and gains of elaborate plumage in females on separate islands.Anna M. Kearns, Leo Joseph, Jeremy J. Austin, Amy C. Driskell and Kevin E. Omlan

What are the impacts of flow regime changes on fish productivity in temperate regions? A systematic map protocol

Background: Ecosystem changes from altered flows can have multiple impacts on fish, including changes to physical habitat, habitat access, food supplies, behaviour, community composition, energy expenditure, and population dynamics. There is growing evidence of the potential negative consequences of altered flow regimes on fluvial ecosystems and the fisheries they support. As such, the scientific and policy communities have acknowledged the need for maintaining or restoring natural flow variability in order to sustain ecological health of fluvial ecosystems. However, for resource managers, making decisions on the potential effects of flow alterations on fish productivity has been problematic because there are still uncertainties regarding flow-fish productivity relationships. Therefore, to ensure the maintenance of healthy and productive aquatic ecosystems and the sustainability of riverine fisheries, a better understanding of the impacts of flow alteration on fish productivity is needed. Due to the wide scope of this review, and the diversity of fish productivity outcomes used to evaluate flow alteration impacts, the set of studies will be quite heterogeneous. Therefore, prior to undertaking a comprehensive and quantitative synthesis, we propose to begin with a systematic map to provide an overview of the available evidence on the impacts of flow regime changes on fish productivity. We will also use this systematic map to identify subtopics that are sufficiently covered by existing studies to allow full systematic reviewing. Methods: This systematic map will compile evidence on the impacts of flow regime changes on fish productivity. All studies that evaluate the effects of flow regime change on direct outcomes of fish productivity, will be included in the review. We will use a broad definition of fish productivity to include any measurement related to: biomass, abundance, density, yield, diversity, growth, survival, individual performance, migration, reproduction, recruitment, or surrogate thereof. Relevant causes of a change in/modification to flow regime can include: (1) anthropogenic causes: dams, reservoirs (impoundments), hydroelectric facilities, locks, levees, water withdrawal (abstraction), water diversion, land-use changes, and road culverts; or (2) natural causes: climate change (possible indirect anthropogenic cause as well), floods, droughts, seasonal changes. Any freshwater or estuarine fish species or species groups in temperate regions will be considered. The review will include a wide range of sources including primary and grey literature and use public databases, search engines and specialist websites. A searchable database containing extracted meta-data from relevant included studies will be developed and provided as a supplementary file to the map report. The final narrative will describe the quantity and key characteristics of the available evidence, identify knowledge gaps for future research and identify subtopics that are sufficiently covered by existing studies to allow full systematic reviewing

The effectiveness of spawning habitat creation or enhancement for substrate spawning temperate fish: a systematic review protocol

Background: Habitat is the foundation for healthy and productive fisheries. For substrate spawning fish, lack of appropriate spawning substrate is inherently limiting and a lack of access to suitable spawning habitat will lead to population collapse. When specific properties of a habitat (e.g., temperature, depth, vegetation composition) are matched to the species’ ecological niche, a spawning habitat can be created or enhanced as a means of mitigating or offsetting the harmful effects of human development. Given the acceleration of habitat degradation in aquatic systems as a result of human activity and resultant loss of biodiversity, it is becoming ever more important to consider the effectiveness of the techniques being used to enhance or create habitat, to ensure management resources are being allocated wisely. The primary aim of this systematic review will be to assess the effectiveness of techniques currently being used to create or enhance spawning habitat for substrate spawning fish in temperate climate regions. Methods: This review will examine studies on the effectiveness of habitat creation or enhancement for substrate spawning fish. We will consider studies in either the North or South temperate climate regions, and include freshwater, estuarine, coastal, or marine environments. Relevant outcomes will include a range of measures used by authors to define effectiveness, including but not limited to the presence of eggs, successful emergence, or improved recruitment. This review will obtain relevant studies from online publication databases, specialist websites, and grey literature using a range of search engines and networking tools. Additional searches will be conducted using the bibliographies of relevant review publications. Study data will be extracted and appraised for quality, including study design, confounding factors, and statistical analysis. A narrative synthesis will be compiled and a meta-analysis will be completed should the data availability and quality allow for it

Real-time measurement of metabolic rate during freezing and thawing of the wood frog, Rana sylvatica: Implications for overwinter energy use

Ectotherms overwintering in temperate ecosystems must survive low temperatures while conserving energy to fuel post-winter reproduction. Freeze-tolerant wood frogs, Rana sylvatica, have an active response to the initiation of ice formation that includes mobilising glucose from glycogen and circulating it around the body to act as a cryoprotectant. We used flow-through respirometry to measure CO2 production (VCO2) in real time during cooling, freezing and thawing. CO2 production increases sharply at three points during freeze-thaw: at +1°C during cooling prior to ice formation (total of 104±17 μl CO2 frog-1 event-1), at the initiation of freezing (565±85 μl CO 2 frog-1 freezing event-1) and after the frog has thawed (564±75 μl CO2 frog-1 freezing event-1). We interpret these increases in metabolic rate to represent the energetic costs of preparation for freezing, the response to freezing and the re-establishment of homeostasis and repair of damage after thawing, respectively. We assumed that frogs metabolise lipid when unfrozen and that carbohydrate fuels metabolism during cooling, freezing and thawing, and when frozen. We then used microclimate temperature data to predict overwinter energetics of wood frogs. Based on the freezing and melting points we measured, frogs in the field were predicted to experience as many as 23 freeze-thaw cycles in the winter of our microclimate recordings. Overwinter carbohydrate consumption appears to be driven by the frequency of freeze-thaw events, and changes in overwinter climate that affect the frequency of freeze-thaw will influence carbohydrate consumption, but changes that affect mean temperatures and the frequency of winter warm spells will modify lipid consumption

Final NOMAD results on nu_mu->nu_tau and nu_e->nu_tau oscillations including a new search for nu_tau appearance using hadronic tau decays

Results from the nu_tau appearance search in a neutrino beam using the full NOMAD data sample are reported. A new analysis unifies all the hadronic tau decays, significantly improving the overall sensitivity of the experiment to oscillations. The "blind analysis" of all topologies yields no evidence for an oscillation signal. In the two-family oscillation scenario, this sets a 90% C.L. allowed region in the sin^2(2theta)-Delta m^2 plane which includes sin^2(2theta)<3.3 x 10^{-4} at large Delta m^2 and Delta m^2 < 0.7 eV^2/c^4 at sin^2(2theta)=1. The corresponding contour in the nu_e->nu_tau oscillation hypothesis results in sin^2(2theta)<1.5 x 10^{-2} at large Delta m^2 and Delta m^2 < 5.9 eV^2/c^4 at sin^2(2theta)=1. We also derive limits on effective couplings of the tau lepton to nu_mu or nu_e.Comment: 46 pages, 16 figures, Latex, to appear on Nucl. Phys.

Inclusive production of ρ0(770),f0(980)\rho^{0}(770), f_0(980) and f2(1270)f_2(1270) mesons in νμ\nu_{\mu} charged current interactions

The inclusive production of the meson resonances $\rho^{0}(770)$, $f_0(980)$ and $f_2(1270)$ in neutrino-nucleus charged current interactions has been studied with the NOMAD detector exposed to the wide band neutrino beam generated by 450 GeV protons at the CERN SPS. For the first time the $f_{0}(980)$ meson is observed in neutrino interactions. The statistical significance of its observation is 6 standard deviations. The presence of $f_{2}(1270)$ in neutrino interactions is reliably established. The average multiplicity of these three resonances is measured as a function of several kinematic variables. The experimental results are compared to the multiplicities obtained from a simulation based on the Lund model. In addition, the average multiplicity of $\rho^{0}(770)$ in antineutrino - nucleus interactions is measured.Comment: 23 pages, 14 figures, 8 tables. To appear in Nucl. Phys.

Search for the exotic Θ+\Theta^+ resonance in the NOMAD experiment

A search for exotic Theta baryon via Theta -> proton +Ks decay mode in the NOMAD muon neutrino DIS data is reported. The special background generation procedure was developed. The proton identification criteria are tuned to maximize the sensitivity to the Theta signal as a function of xF which allows to study the Theta production mechanism. We do not observe any evidence for the Theta state in the NOMAD data. We provide an upper limit on Theta production rate at 90% CL as 2.13 per 1000 of neutrino interactions.Comment: Accepted to European Physics Journal

Search for nu(mu)-->nu(e) Oscillations in the NOMAD Experiment

We present the results of a search for nu(mu)-->nu(e) oscillations in the NOMAD experiment at CERN. The experiment looked for the appearance of nu(e) in a predominantly nu(mu) wide-band neutrino beam at the CERN SPS. No evidence for oscillations was found. The 90% confidence limits obtained are delta m^2 < 0.4 eV^2 for maximal mixing and sin^2(2theta) < 1.4x10^{-3} for large delta m^2. This result excludes the LSND allowed region of oscillation parameters with delta m^2 > 10 eV^2.Comment: 19 pages, 8 figures. Submitted to Phys. Lett.

Prediction of Neutrino Fluxes in the NOMAD Experiment

The method developed for the calculation of the flux and composition of the West Area Neutrino Beam used by NOMAD in its search for neutrino oscillations is described. The calculation is based on particle production rates computed using a recent version of FLUKA and modified to take into account the cross sections measured by the SPY and NA20 experiments. These particles are propagated through the beam line taking into account the material and magnetic fields they traverse. The neutrinos produced through their decays are tracked to the NOMAD detector. The fluxes of the four neutrino flavours at NOMAD are predicted with an uncertainty of about 8% for nu(mu) and nu(e), 10% for antinu(mu), and 12% for antinu(e). The energy-dependent uncertainty achieved on the R(e, mu) prediction needed for a nu(mu)->nu(e) oscillation search ranges from 4% to 7%, whereas the overall normalization uncertainty on this ratio is 4.2%.Comment: 43 pages, 20 figures. Submitted to Nucl. Phys.