Diel Vertical Distribution Patterns of Zooplankton along the Western Antarctic Peninsula

The Western Antarctic Peninsula (WAP) is a region that has undergone significant change over the past several decades due to unprecedented increases sea surface temperature and decreases in sea ice cover. The ongoing Palmer Antarctica Long-Term Ecological Research (PAL LTER) study shows that these environmental changes are significantly affecting the marine pelagic ecosystem along the WAP. The goal of this study was to analyze diel vertical distribution patterns of zooplankton along the WAP

Video-rate or high-precision: A flexible range imaging camera

A range imaging camera produces an output similar to a digital photograph, but every pixel in the image contains distance information as well as intensity. This is useful for measuring the shape, size and location of objects in a scene, hence is well suited to certain machine vision applications. Previously we demonstrated a heterodyne range imaging system operating in a relatively high resolution (512-by-512) pixels and high precision (0.4 mm best case) configuration, but with a slow measurement rate (one every 10 s). Although this high precision range imaging is useful for some applications, the low acquisition speed is limiting in many situations. The system’s frame rate and length of acquisition is fully configurable in software, which means the measurement rate can be increased by compromising precision and image resolution. In this paper we demonstrate the flexibility of our range imaging system by showing examples of high precision ranging at slow acquisition speeds and video-rate ranging with reduced ranging precision and image resolution. We also show that the heterodyne approach and the use of more than four samples per beat cycle provides better linearity than the traditional homodyne quadrature detection approach. Finally, we comment on practical issues of frame rate and beat signal frequency selection

Shoulder Muscle Activity While Swimming in Different Wetsuits and Across Different Paces

International Journal of Exercise Science 16(1): 172-181, 2023. A triathlon wetsuit is an important piece of equipment during the swim portion of the triathlon for the benefits of thermoregulation and additional buoyancy. However, a lack of knowledge exists about whether or not shoulder muscle activity is influenced by wearing a wetsuit. The purpose of this study was to determine if there were changes in shoulder muscle activity during front crawl with four different wetsuit conditions: Full sleeve (FSW), Sleeveless (SLW), Buoyancy shorts (BS), No wetsuit (NWS) in three different subjective swimming paces (slow, medium, and fast). Eight subjects (5 males, 3 females: mean ± SD, age = 39.1 ± 12.5 years; height = 1.8 ± 0.1 m; mass = 74.6 ± 12.9 kg; percent body fat = 19.0 ± 7.8%) completed twelve total swim conditions (4 wetsuits x 3 swimming pace) in a 25-m indoor pool. Muscle activity in anterior deltoid (AD) and posterior deltoid (PD) were measured using a wireless waterproofed electromyography (EMG) system. Stroke rate (SR) was calculated using the time to complete five-stroke cycles. The AD, PD EMG, and SR were compared using ANOVA with repeated measures. None of the dependent variables showed the interaction between wetsuit conditions and swimming paces (p \u3e 0.05). Both AD and PD muscle activity as well as SR were influenced by swimming pace (p \u3c 0.05) but not wetsuit conditions (p \u3e 0.05). In conclusion, shoulder muscle activity and SR were not influenced by types of wetsuits but influenced by swimming pace

Zooplankton diel vertical migration during Antarctic summer

Zooplankton diel vertical migration (DVM) during summer in the polar oceans is presumed to be dampened due to near continuous daylight. We analyzed zooplankton diel vertical distribution patterns in a wide range of taxa along the Western Antarctic Peninsula (WAP) to assess if DVM occurs, and if so, what environmental controls modulate DVM in the austral summer. Zooplankton were collected during January and February in paired day-night, depth-stratified tows through the mesopelagic zone along the WAP from 2009-2017, as well as in day and night epipelagic net tows from 1993-2017. The copepod Metridia gerlachei, salp Salpa thompsoni, pteropod Limacina helicina antarctica, and ostracods consistently conducted DVM between the mesopelagic and epipelagic zones. Migration distance for M. gerlachei and ostracods decreased as photoperiod increased from 17 to 22 h daylight. The copepods Calanoides acutus and Rhincalanus gigas, as well as euphausiids Thysanoessa macrura and Euphausia crystallorophias, conducted shallow (mostly within the epipelagic zone) DVMs into the upper 50 m at night. Rhincalanus gigas, T. macrura, and L. h. antarctica DVM behavior was modulated by chlorophyll a concentration, mixed layer depth, and depth of the subsurface chlorophyll a maximum, respectively. Carnivorous and detritivorous taxa – including the calanoid copepod Paraeuchaeta antarctica, ostracods, chaetognaths, and Tomopteris spp. polychaetes – as well as seasonally migrating copepods, were most abundant in the mesopelagic zone regardless of the diel cycle. Paraeuchaeta antarctica underwent reverse DVM within the top 100 m. The impacts of Antarctic zooplankton summer DVM and the resident mesopelagic assemblage on carbon export should be better quantified

Linking Antarctic krill larval supply and recruitment along the Antarctic Peninsula

Antarctic krill (Euphausia superba) larval production and overwinter survival drive recruitment variability, which in turn determines abundance trends. The Antarctic Peninsula has been described as a recruitment hot spot and as a potentially important source region for larval and juvenile krill dispersal. However, there has been no analysis to spatially resolve regional-scale krill population dynamics across life stages. We assessed spatiotemporal patterns in krill demography using two decades of austral summer data collected along the North and West Antarctic Peninsula since 1993. We identified persistent spatial segregation in the summer distribution of euphausiid larvae (E. superba plus other species), which were concentrated in oceanic waters along the continental slope, and E. superba recruits, which were concentrated in shelf and coastal waters. Mature females of E. superba were more abundant over the continental shelf than the slope or coast. Euphausiid larval abundance was relatively localized and weakly correlated between the North and West Antarctic Peninsula, while E. superba recruitment was generally synchronized throughout the entire region. Euphausiid larval abundance along the West Antarctic Peninsula slope explained E. superba recruitment in shelf and coastal waters the next year. Given the localized nature of krill productivity, it is critical to evaluate the connectivity between upstream and downstream areas of the Antarctic Peninsula and beyond. Krill fishery catch distributions and population projections in the context of a changing climate should account for ontogenetic habitat partitioning, regional population connectivity, and highly variable recruitment

Chemotherapy-induced amenorrhea: a prospective study of brain activation changes and neurocognitive correlates

Chemotherapy-induced amenorrhea (CIA) often occurs in pre- and peri-menopausal BC patients, and while cancer/chemotherapy and abrupt estrogen loss have separately been shown to affect cognition and brain function, studies of the cognitive effects of CIA are equivocal, and its effects on brain function are unknown. Functional MRI (fMRI) during a working memory task was used to prospectively assess the pattern of brain activation and deactivation prior to and one month after chemotherapy in BC patients who experienced CIA (n=9), post-menopausal BC patients undergoing chemotherapy (n=9), and pre- and post-menopausal healthy controls (n=6 each). Neurocognitive testing was also performed at both time points. Repeated measures general linear models were used to assess statistical significance, and age was a covariate in all analyses. We observed a group-by-time interaction in the combined magnitudes of brain activation and deactivation (p = 0.006): the CIA group increased in magnitude from baseline to post-treatment while other groups maintained similar levels over time. Further, the change in brain activity magnitude in CIA was strongly correlated with change in processing speed neurocognitive testing score (r=0.837 p=0.005), suggesting this increase in brain activity reflects effective cognitive compensation. Our results demonstrate prospectively that the pattern of change in brain activity from pre- to post-chemotherapy varies according to pre-treatment menopausal status. Cognitive correlates add to the potential clinical significance of these findings. These findings have implications for risk appraisal and development of prevention or treatment strategies for cognitive changes in CIA

Krill availability in adjacent Adélie and gentoo penguin foraging regions near Palmer Station, Antarctica

The Palmer Deep canyon along the West Antarctic Peninsula is a biological hotspot with abundant phytoplankton and krill supporting Adélie and gentoo penguin rookeries at the canyon head. Nearshore studies have focused on physical mechanisms driving primary production and penguin foraging, but less is known about finer-scale krill distribution and density. We designed two acoustic survey grids paired with conductivity–temperature–depth profiles within adjacent Adélie and gentoo penguin foraging regions near Palmer Station, Ant-arctica. The grids were sampled from January to March 2019 to assess variability in krill availability and associations with oceanographic properties. Krill density was similar in the two regions, but krill swarms were longer and larger in the gentoo foraging region, which was also less stratified and had lower chlorophyll concentrations. In the inshore zone near penguin colonies, depth-integrated krill density increased from summer to autumn (January–March) independent of chlorophyll concentration, suggesting a life history-driven adult krill migration rather than a resource-driven biomass increase. The daytime depth of krill biomass deepened through the summer and became decoupled from the chlorophyll maximum in March as diel vertical migration magnitude likely increased. Penguins near Palmer Station did not appear to be limited by krill availability during our study, and regional differences in krill depth match the foraging behaviors of the two penguin species. Understanding fine-scale physical forcing and ecological interactions in coastal Antarctic hotspots is critical for predicting how environmental change will impact these ecosystems

Long-term observations of pteropod phenology along the Western Antarctic Peninsula

Shifts in phenology – annually occurring life history events – have been observed among many marine organisms due to global warming. We examined if phenological changes in the pteropod (pelagic snail) Limacina helicina antarctica have occurred along the Western Antarctic Peninsula, one of the most intensely warming regions on Earth, which would have important implications for regional food web dynamics. Pteropod shell diameters were analyzed from samples collected in the Palmer Antarctica Long-Term Ecological Research (PAL LTER) program year-round sediment trap from 2004 to 2018. There was considerable interannual variability in the time of appearance of a new pteropod cohort, which ranged from day of year 22–255, but no long-term, directional change. Mean L. h. antarctica growth rate for the time series was 0.009 mm day−1 and there was no significant long-term change in growth rate. This study represents the first in the Southern Ocean to illustrate that pteropods actively grow throughout the winter season. Sea ice was the dominant driver of pteropod phenology, with earlier sea ice retreat the year prior, lower winter sea surface temperature (SST) the year prior, and higher primary productivity in the same year leading to earlier pteropod time of appearance. Similarly, more open water with higher autumn SST, both the year prior, and elevated chlorophyll a the same year, promoted faster pteropod growth. These results indicate that while pteropods are responsive to considerable environmental variability, their phenology has remained relatively stable. The identified responses of pteropod phenology to environmental shifts are key for determining future effects of climate change on biogeochemical cycling and plankton trophic interactions in the region

Two to Five Truths in Non-Negative Matrix Factorization

In this paper, we explore the role of matrix scaling on a matrix of counts when building a topic model using non-negative matrix factorization. We present a scaling inspired by the normalized Laplacian (NL) for graphs that can greatly improve the quality of a non-negative matrix factorization. The results parallel those in the spectral graph clustering work of \cite{Priebe:2019}, where the authors proved adjacency spectral embedding (ASE) spectral clustering was more likely to discover core-periphery partitions and Laplacian Spectral Embedding (LSE) was more likely to discover affinity partitions. In text analysis non-negative matrix factorization (NMF) is typically used on a matrix of co-occurrence ``contexts'' and ``terms" counts. The matrix scaling inspired by LSE gives significant improvement for text topic models in a variety of datasets. We illustrate the dramatic difference a matrix scalings in NMF can greatly improve the quality of a topic model on three datasets where human annotation is available. Using the adjusted Rand index (ARI), a measure cluster similarity we see an increase of 50\% for Twitter data and over 200\% for a newsgroup dataset versus using counts, which is the analogue of ASE. For clean data, such as those from the Document Understanding Conference, NL gives over 40\% improvement over ASE. We conclude with some analysis of this phenomenon and some connections of this scaling with other matrix scaling methods

Early respiratory viral infections in infants with cystic fibrosis

This article is made available for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.Background Viral infections contribute to morbidity in cystic fibrosis (CF), but the impact of respiratory viruses on the development of airway disease is poorly understood. Methods Infants with CF identified by newborn screening were enrolled prior to 4 months of age to participate in a prospective observational study at 4 centers. Clinical data were collected at clinic visits and weekly phone calls. Multiplex PCR assays were performed on nasopharyngeal swabs to detect respiratory viruses during routine visits and when symptomatic. Participants underwent bronchoscopy with bronchoalveolar lavage (BAL) and a subset underwent pulmonary function testing. We present findings through 8.5 months of life. Results Seventy infants were enrolled, mean age 3.1 ± 0.8 months. Rhinovirus was the most prevalent virus (66%), followed by parainfluenza (19%), and coronavirus (16%). Participants had a median of 1.5 viral positive swabs (range 0–10). Past viral infection was associated with elevated neutrophil concentrations and bacterial isolates in BAL fluid, including recovery of classic CF bacterial pathogens. When antibiotics were prescribed for respiratory-related indications, viruses were identified in 52% of those instances. Conclusions Early viral infections were associated with greater neutrophilic inflammation and bacterial pathogens. Early viral infections appear to contribute to initiation of lower airway inflammation in infants with CF. Antibiotics were commonly prescribed in the setting of a viral infection. Future investigations examining longitudinal relationships between viral infections, airway microbiome, and antibiotic use will allow us to elucidate the interplay between these factors in young children with CF