Comparative transcriptional profiling analysis of olive ripe-fruit pericarp and abscission zone tissues shows expression differences and distinct patterns of transcriptional regulation

[Background] In fleshy fruit, abscission of fully ripe fruit is a process intimately linked to the ripening process. In many fruit-tree species, such as olive (Olea europaea L. cv. Picual), there is a coupling of the full ripening and the activation of the abscission-zone (AZ). Although fully ripe fruit have marked physiological differences with respect to their AZs, dissimilarities in gene expression have not been thoroughly investigated. The present study examines the transcriptome of olive fruit and their AZ tissues at the last stage of ripening, monitored using mRNA-Seq. [Results] Roche-454 massive parallel pyrosequencing enabled us to generate 397,457 high-quality EST sequences, among which 199,075 were from ripe-fruit pericarp and 198,382 from AZ tissues. We assembled these sequences into 19,062 contigs, grouped as 17,048 isotigs. Using the read amounts for each annotated isotig (from a total of 15,671), we identified 7,756 transcripts. A comparative analysis of the transcription profiles conducted in ripe-fruit pericarp and AZ evidenced that 4,391 genes were differentially expressed genes (DEGs) in fruit and AZ. Functional categorization of the DEGs revealed that AZ tissue has an apparently higher response to external stimuli than does that of ripe fruit, revealing a higher expression of auxin-signaling genes, as well as lignin catabolic and biosynthetic pathway, aromatic amino acid biosynthetic pathway, isoprenoid biosynthetic pathway, protein amino acid dephosphorylation, amino acid transport, and photosynthesis. By contrast, fruit-enriched transcripts are involved in ATP synthesis coupled proton transport, glycolysis, and cell-wall organization. Furthermore, over 150 transcripts encoding putative transcription-factors (TFs) were identified (37 fruit TFs and 113 AZ TFs), of which we randomly selected eight genes and we confirmed their expression patterns using quantitative RT-PCR. [Conclusion] We generated a set of EST sequences from olive fruit at full ripening, and DEGs between two different olive tissues, ripe fruit and their AZ, were also identified. Regarding the cross-talk between fruit and AZ, using qRT-PCR, we confirmed a set of TF genes that were differentially expressed, revealing profiles of expression that have not previously been reported, this offering a promising beginning for studies on the different transcription regulation in such tissues.This work was supported by the ‘Ministerio de Ciencia e Innovación’, Spain (BFU2010-18116)

El proyecto Flying Challenge, una experiencia de interconexión universidad-empresa utilizando mentoría entre iguales

Congreso Universitario de Innovación Educativa En las Enseñanzas Técnicas, CUIEET (26º. 2018. Gijón

Drag reduction on a blunt body by self-adaption of rear flexibly hinged flaps

We study the aerodynamics of a blunt-based body with rear flexibly-hinged rigid flaps, subject to a turbulent flow of Reynolds number Re = 12000, under aligned and cross flow conditions with yaw angle β = 0◦ and β = 4◦. To that aim, different values of the equivalent torsional stiffness are considered, to cover the range of reduced velocity U∗ = (0, 3.48] in water tank experiments. The effect of the angular deflection of plates on the drag and near wake flow is analyzed, experimentally and numerically. The results show that, in the range of U∗ herein considered, the plates undergo an inwards quasi-static, self-adaptive deflection, which is symmetric for yaw angles β = 0◦ and asymmetric for β = 4◦. In particular, the plates feature small mean deformation angles for values of U∗ < 1, whereas a sharp and monotonic increase of such deflection occurs for U∗ > 1, i.e. for lower values of the hinge’s stiffness, with an asymptotic trend towards the larger values of U∗. A critical value of reduced velocity of U∗ ≃ 0.96 is obtained as the instability threshold above which plates depart from their initial equilibrium position. The progressive streamlining of the trailing edge translates into significant reductions of the associated mean drag coefficients. Thus, reductions close to 19% with respect to reference static plates configurations are obtained for the most flexible case of U∗ = 3.48 for both β = 0◦ and β = 4◦. A close inspection of the near wake reveals that the inwards progressive mean displacement of the plates yields a reduction in the recirculation bubble size. A symmetric evolution of the recirculating bubble is observed for β = 0◦, whereas the bubble becomes asymmetric for β = 4◦, with a larger leeward clockwise vortex. In both cases, the drag coefficient is shown to vary linearly with the global aspect ratio of the recirculating bubble. The analysis of the numerical results shows that the reduced extension of the recirculating bubble significantly alters the formation length and intensity of the eddies size and associated pressure. It is observed that despite the local pressure decrease in the vortices shed from the trailing edges, the plates self adaption reduces their size and prevents the eddies from entering the cavity, thus, creating a dead flow region with a consequent pressure increase at the body base.Junta de Andalucia FEDER-UJA 1262764Universidad de JaenEuropean CommissionSpanish MCIN/AEI PDC2021-121288-I00European Union Next Generation EU/PRT

Methodology to assess the maximum irrigation rates at regional scale using geostatistics and GIS

Ponencia presentada en la Conference of Agricultural Engineering celebrada en Valencia del 8 añ 12 de julio de 2012Soil water holding capacity is an important parameter for irrigation scheduling and water balance modelling in fields. In the framework of precision irrigation the knowledge of the spatial distribution of this parameter is useful to advice the maximum irrigation rate specifically for each field in an irrigation district, region, etc. The soil water holding capacity (SWHC) can be assessed as the soil water content between the field capacity (FC) and the permanent wilting point (PWP). In this work, we present a methodology to assess the spatial distribution of the maximum irrigation rate depending on the soil water holding capacity. This methodology combines geostatistic techniques with geographical information system-GIS tool. A pilot zone of 12 400 ha located in the Palancia river lowland (between Valencia and Castellón province, Spain) in which the main irrigated crops are citrus (53.8 %), and vegetables (13.3 %), was selected to develop this methodology. For spatial modelling of SWHC, experimental semivariograms were assessed for the FC and PWP at three soil depth intervals (0-10, 10-30, 30-60 cm). Spherical models fitted well to the experimental semivariograms, with a very high spatial dependency index (ID = 0.05-0.41) which support reliable predictions on basis the fitted models. The cokriging spatial interpolation method, considering the percentage of sand as secondary variable, was the best option to minimize the root mean square error in the cross-validation test.Peer Reviewe

Conceptual design of the ITER fast-ion loss detector

et al.A conceptual design of a reciprocating fast-ion loss detector for ITER has been developed and is presented here. Fast-ion orbit simulations in a 3D magnetic equilibrium and up-to-date first wall have been carried out to revise the measurement requirements for the lost alpha monitor in ITER. In agreement with recent observations, the simulations presented here suggest that a pitch-angle resolution of ∼5° might be necessary to identify the loss mechanisms. Synthetic measurements including realistic lost alpha-particle as well as neutron and gamma fluxes predict scintillator signal-to-noise levels measurable with standard light acquisition systems with the detector aperture at ∼11 cm outside of the diagnostic first wall. At measurement position, heat load on detector head is comparable to that in present devices.This research was supported in part by the Spanish Ministry of Economy and Competitiveness (Grant Nos. RYC2011-09152, FIS2015-69362-P, and ENE2012- 31087) and the Marie Curie FP7 Integration Grant (No. PCIG11-GA2012-321455).Peer Reviewe

Study of protein kinase c signalling in saccharomyces cerevisiae by silac-based phosphoproteomics

Comunicaciones a congreso

The diagnosis of hereditary angioedema: family caregivers’ experiences

The aim of this study was to understand the experiences of family caregivers in the process of diagnosing hereditary angioedema. An interpretive and qualitative research methodology based on Gadamer’s philosophical hermeneutics was carried out. Data collection took place between May 2015 and August 2016 and included a focus group and in-depth interviews with 16 family caregivers. Two themes define the experiences of family caregivers: “Family life focuses on identifying the problem” and “Discovering and coping with a complex diagnosis.” The process of diagnosis generates fear, anxiety, uncertainty, and incomprehension. Family caregivers are the main support for patients diagnosed with hereditary angioedema. As they share in the patients’ suffering, they need a diagnosis to be established to be able to cope with the disease and offer support. Family health nurses can contribute to improving the coping process in this phase of the disease

Análisis del espesor coroideo en pacientes con queratocono

Objective. To determine and compare choroidal thickness (CT) in keratoconus (KC) patients using Enhanced Depth Imaging (EDI) OCT. Methods. A comparative cross-sectional study including 26 patients with KC and 26 healthy controls assessed with Pentacam and EDI-OCT. CT was measured manually with the Caliper function at thirteen locations at 500 µm regular intervals. Results. The average CT in T6 was 253.96 ± 88.95 μm in the KC group, and of 309.39 ± 94.11 μm in the control group (p <0.041). No significant differences in mean CT were observed in the rest of the points, including the subfoveal CT (M), 351.48 ± 106.3 vs 365.35 ± 114.6 μm, (p = 0.66). No correlation was observed between the mean subfoveal CT (M), the mean CT in the KC group, and the values of K1 (p = 0.977 and p = 0.498 respectively), K2 (p = 0.450 and p = 0.656), corneal asphericity (Q ) (p = 0.986 and p = 0.902), minimal pachymetry (Pachy) (p = 0.408 and p = 0.688), keratoconus index (KI) (p = 0.601 and p = 0.217), vertical asymmetry index (VAT) (p = 0.296 and p = 0.523), staging of KC (TKC) (p = 0.549 and p = 0.08) and corneal apex morphology. Conclusion. Significant lower CT was found in the KC group in T6 (3000 μm temporal to the fovea). No significant difference of CT values in KC patients and healthy subjects was found in the other twelve measurement locations.We found no association between the refractive and keratometric indexes obtained by corneal topography and subfoveal CT.Objetivo. Determinar y comparar el grosor de la coroides (CT) en pacientes con queratocono (KC) usando OCT con Enhanced Depth Imaging (EDI). Métodos. Estudio comparativo transversal que incluye 26 pacientes con KC y 26 controles sanos evaluados con Pentacam y EDI-OCT. El KC fue medido manualmente con la función Caliper en trece puntos a intervalos regulares de 500 µm. Resultados. El promedio de CT en T6 fue de 253,96 ± 88,95 μm en el grupo KC, y de 309,39 ± 94,11 μm en el grupo de control (p <0,041). No se observaron diferencias significativas en la media de CT en el resto de los puntos, incluyendo el CT subfoveal (M), 351.48 ± 106.3 vs 365.35 ± 114.6 μm, (p = 0.66). No se observó ninguna correlación entre la media de CT (M) subfoveal, la media de CT en el grupo KC, y los valores de K1 (p = 0,977 y p = 0,498 respectivamente), K2 (p = 0,450 y p = 0,656), la asfericidad corneal (Q) (p = 0,986 y p = 0. 902), paquimetría mínima (Pachy) (p = 0,408 y p = 0,688), índice de queratocono (KI) (p = 0,601 y p = 0,217), índice de asimetría vertical (VIA) (p = 0,296 y p = 0,523), estadificación del KC (TKC) (p = 0,549 y p = 0,08) y morfología del ápice corneal. Conclusión. Se observó un CT significativamente menor en el grupo KC en T6 (3000 μm temporal a la fóvea). No se encontraron diferencias significativas entre los valores del CT en los pacientes con KC y en los sujetos sanos en los 12 puntos de medida restantes. No se encontró ninguna asociación entre los índices refractivos y queratométricos obtenidos por la topografía corneal y el CT subfoveal

Formation of high-order acoustic Bessel beams by spiral diffraction gratings

The formation of high-order Bessel beams by a passive acoustic device consisting of an Archimedes' spiral diffraction grating is theoretically, numerically, and experimentally reported in this paper. These beams are propagation-invariant solutions of the Helmholtz equation and are characterized by an azimuthal variation of the phase along its annular spectrum producing an acoustic vortex in the near field. In our system, the scattering of plane acoustic waves by the spiral grating leads to the formation of the acoustic vortex with zero pressure on axis and the angular phase dislocations characterized by the spiral geometry. The order of the generated Bessel beam and, as a consequence, the size of the generated vortex can be fixed by the number of arms in the spiral diffraction grating. The obtained results allow for obtaining Bessel beams with controllable vorticity by a passive device, which has potential applications in low-cost acoustic tweezers and acoustic radiation force devices.We acknowledge financial support from MINECO of the Spanish Government under Grants No. MTM2012-36740-C02-02, No. FIS2015-65998-C2-1-P, and No. FIS2015-65998-C2-2-P. N.J. acknowledges financial support from PAID-2011 Universitat Politecnica de Valencia.Jimenez, N.; Picó Vila, R.; Sánchez Morcillo, VJ.; Romero García, V.; García-Raffi, LM.; Staliünas, K. (2016). Formation of high-order acoustic Bessel beams by spiral diffraction gratings. Physical Review E. 94(5). doi:10.1103/PhysRevE.94.053004S05300494