Clumped isotopologue constraints on the origin of methane at seafloor hot springs

Author Posting. © The Author(s), 2017. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Geochimica et Cosmochimica Acta 223 (2018): 141-158, doi:10.1016/j.gca.2017.11.030.Hot-spring fluids emanating from deep-sea vents hosted in unsedimented ultramafic and mafic rock commonly contain high concentrations of methane. Multiple hypotheses have been proposed for the origin(s) of this methane, ranging from synthesis via reduction of aqueous inorganic carbon (ΣCO2) during active fluid circulation to leaching of methane-rich fluid inclusions from plutonic rocks of the oceanic crust. To further resolve the process(es) responsible for methane generation in these systems, we determined the relative abundances of several methane isotopologues (including 13CH3D, a “clumped” isotopologue containing two rare isotope substitutions) in hot-spring source fluids sampled from four geochemically-distinct hydrothermal vent fields (Rainbow, Von Damm, Lost City, and Lucky Strike). Apparent equilibrium temperatures retrieved from methane clumped isotopologue analyses average 310−42 +53 °C, with no apparent relation to the wide range of fluid temperatures (96 to 370 °C) and chemical compositions (pH, [H2], [ΣCO2], [CH4]) represented. Combined with very similar bulk stable isotope ratios (13C/12C and D/H) of methane across the suite of hydrothermal fluids, all available geochemical and isotopic data suggest a common mechanism of methane generation at depth that is disconnected from active fluid circulation. Attainment of equilibrium amongst methane isotopologues at temperatures of ca. 270 to 360 °C is compatible with the thermodynamically-favorable reduction of CO2 to CH4 at temperatures at or below ca. 400 °C under redox conditions characterizing intrusive rocks derived from sub-ridge melts. Collectively, the observations support a model where methane-rich aqueous fluids, known to be trapped in rocks of the oceanic lithosphere, are liberated from host rocks during hydrothermal circulation and perhaps represent the major source of methane venting with thermal waters at unsedimented hydrothermal fields. The results also provide further evidence that water-rock reactions occurring at temperatures lower than 200 °C do not contribute significantly to the quantities of methane venting at mid-ocean ridge hot springs.Financial support from the U.S. National Science Foundation (NSF awards EAR-1250394 to S.O., and OCE-1061863 and OCE-0549829 to J.S.S.), the National Aeronautics and Space Administration (NASA) (NNX-327 09AB75G to J.S.S., and the NASA Astrobiology Institute “Rock- Powered Life” project under cooperative agreement NNA15BB02A to S.O.), the Alfred P. Sloan Foundation via the Deep Carbon Observatory (to S.O. and J.S.S.), the U.S. Department of Defense (DoD) through a National Defense Science & Engineering Graduate (NDSEG) Fellowship (to D.T.W.), a Shell-MIT Energy Initiative Fellowship, and the Kerr-McGee Professorship at MIT (to S.O.) is gratefully acknowledged

Abiotic redox reactions in hydrothermal mixing zones: decreased energy availability for the subsurface biosphere

© The Author(s), 202. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in McDermott, J. M., Sylva, S. P., Ono, S., German, C. R., & Seewald, J. S. Abiotic redox reactions in hydrothermal mixing zones: decreased energy availability for the subsurface biosphere. Proceedings of the National Academy of Sciences of the United States of America, 117(34), (2020): 20453-20461, doi:10.1073/pnas.2003108117.Subseafloor mixing of high-temperature hot-spring fluids with cold seawater creates intermediate-temperature diffuse fluids that are replete with potential chemical energy. This energy can be harnessed by a chemosynthetic biosphere that permeates hydrothermal regions on Earth. Shifts in the abundance of redox-reactive species in diffuse fluids are often interpreted to reflect the direct influence of subseafloor microbial activity on fluid geochemical budgets. Here, we examine hydrothermal fluids venting at 44 to 149 °C at the Piccard hydrothermal field that span the canonical 122 °C limit to life, and thus provide a rare opportunity to study the transition between habitable and uninhabitable environments. In contrast with previous studies, we show that hydrocarbons are contributed by biomass pyrolysis, while abiotic sulfate (SO42−) reduction produces large depletions in H2. The latter process consumes energy that could otherwise support key metabolic strategies employed by the subseafloor biosphere. Available Gibbs free energy is reduced by 71 to 86% across the habitable temperature range for both hydrogenotrophic SO42− reduction to hydrogen sulfide (H2S) and carbon dioxide (CO2) reduction to methane (CH4). The abiotic H2 sink we identify has implications for the productivity of subseafloor microbial ecosystems and is an important process to consider within models of H2 production and consumption in young oceanic crust.Financial support was provided by the National Aeronautics and Space Administration (NASA) Astrobiology program (Awards NNX09AB75G and 80NSSC19K1427 to C.R.G. and J.S.S.) and the NSF (Award OCE-1061863 to C.R.G. and J.S.S.). Ship and vehicle time for cruise FK008 was provided by the Schmidt Ocean Institute. We thank the ROV Jason II and HROV Nereus groups, and the captain, officers, and crew of R/V Atlantis (AT18-16) and R/V Falkor (FK008) for their dedication to skillful operations at sea. We thank our scientific colleagues from both cruises, as well as Meg Tivey, Frieder Klein, and Scott Wankel for insightful discussions. We are grateful to the editor and two anonymous reviewers for providing helpful comments and suggestions

Geochemistry of hydrothermal fluids from the E2-segment of the East Scotia Ridge: Magmatic input, reaction zone processes, fluid mixing regimes and bioenergetic landscapes

The compositions of hydrothermal fluids in back-arc basins (BABs) can be affected by the influx of magmatic fluids into systems that are dominated by reactions between basement rocks and seawater-derived fluids. The East Scotia Ridge (ESR) in the Scotia Sea hosts such hydrothermal systems where the role of magmatic fluid influx has not yet been addressed. During expedition PS119 in 2019, three chimneys were sampled from the E2 segment. These samples were analysed for their chemical and isotopic composition along with fluid inclusions in corresponding precipitates. Our data provide evidence for the temporal evolution of hydrothermal fluids in this remote back-arc system. Salinity variations in anhydrite-hosted fluid inclusions indicate that phase separation takes place in the subseafloor. Moderate-temperature (320°C) fluids from the E2-South area were sampled. Depletions in fluid-mobile elements, ΣREE and low δ18OH2O show that the basement in this root zone has been leached since the previous sampling in 2010. The results indicate that high-temperature fluid-rock interactions are key in setting the composition of the fluids with cation-to-chloride ratios suggesting a common root zone for both vent sites. The concentrations of dissolved gases provide new insights in the connection between magmatic degassing and its influence on endmember vent fluid composition. Specifically, stable isotope (O, H) data and elevated CO2 concentrations point to a minor influx of magmatic vapour. Stable sulphur isotopes provide no evidence for SO2 disproportionation suggesting a H2O-CO2 dominated nature of these vapours. The concentrations of conservative elements in the E2-W fluid reflects subseafloor mixing between E2-S endmember fluid and seawater. In contrast, non-conservative behaviour, and depletion of Fe, H2, and H2S point to a combination of sub-surface abiotic and biotic reactions affecting these fluids. Similarly, E2-W fluids show evidence for H2S and CH4 being metabolized in the subseafloor. Thermodynamic computations confirm that the E2 system is dominated by sulphide oxidation as a major catabolic pathway. Our results indicate that the conditions at E2 are favourable to hosting a robust subseafloor biosphere.publishedVersio

Extent and Volume of Lava Flows Erupted at 9°50′N, East Pacific Rise in 2005–2006 From Autonomous Underwater Vehicle Surveys

Seafloor volcanic eruptions are difficult to directly observe due to lengthy eruption cycles and the remote location of mid-ocean ridges. Volcanic eruptions in 2005–2006 at 9°50′N on the East Pacific Rise have been well documented, but the lava volume and flow extent remain uncertain because of the limited near-bottom bathymetric data. We present near-bottom data collected during 19 autonomous underwater vehicle (AUV) Sentry dives at 9°50′N in 2018, 2019, and 2021. The resulting 1 m-resolution bathymetric grid and 20 cm-resolution sidescan sonar images cover 115 km2, and span the entire area of the 2005–2006 eruptions, including an 8 km2 pre-eruption survey collected with AUV ABE in 2001. Pre- and post-eruption surveys, combined with sidescan sonar images and seismo-acoustic impulsive events recorded during the eruptions, are used to quantify the lava flow extent and to estimate changes in seafloor depth caused by lava emplacement. During the 2005–2006 eruptions, lava flowed up to ∼3 km away from the axial summit trough, covering an area of ∼20.8 km2; ∼50% larger than previously thought. Where pre- and post-eruption surveys overlap, individual flow lobes can be resolved, confirming that lava thickness varies from ∼1 to 10 m, and increases with distance from eruptive fissures. The resulting lava volume estimate indicates that ∼57% of the melt extracted from the axial melt lens probably remained in the subsurface as dikes. These observations provide insights into recharge cycles in the subsurface magma system, and are a baseline for studying future eruptions at the 9°50′N area.publishedVersio

Extent and volume of lava flows erupted at 9°50’N, East Pacific Rise in 2005–2006 from autonomous underwater vehicle surveys

© The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Wu, J., Parnell‐Turner, R., Fornari, D., Kurras, G., Berrios‐Rivera, N., Barreyre, T., & McDermott, J. Extent and volume of lava flows erupted at 9°50’N, East Pacific Rise in 2005–2006 from autonomous underwater vehicle surveys. Geochemistry Geophysics Geosystems, 23, (2022): e2021GC010213, https://doi.org/10.1029/2021gc010213.Seafloor volcanic eruptions are difficult to directly observe due to lengthy eruption cycles and the remote location of mid-ocean ridges. Volcanic eruptions in 2005–2006 at 9°50′N on the East Pacific Rise have been well documented, but the lava volume and flow extent remain uncertain because of the limited near-bottom bathymetric data. We present near-bottom data collected during 19 autonomous underwater vehicle (AUV) Sentry dives at 9°50′N in 2018, 2019, and 2021. The resulting 1 m-resolution bathymetric grid and 20 cm-resolution sidescan sonar images cover 115 km2, and span the entire area of the 2005–2006 eruptions, including an 8 km2 pre-eruption survey collected with AUV ABE in 2001. Pre- and post-eruption surveys, combined with sidescan sonar images and seismo-acoustic impulsive events recorded during the eruptions, are used to quantify the lava flow extent and to estimate changes in seafloor depth caused by lava emplacement. During the 2005–2006 eruptions, lava flowed up to ∼3 km away from the axial summit trough, covering an area of ∼20.8 km2; ∼50% larger than previously thought. Where pre- and post-eruption surveys overlap, individual flow lobes can be resolved, confirming that lava thickness varies from ∼1 to 10 m, and increases with distance from eruptive fissures. The resulting lava volume estimate indicates that ∼57% of the melt extracted from the axial melt lens probably remained in the subsurface as dikes. These observations provide insights into recharge cycles in the subsurface magma system, and are a baseline for studying future eruptions at the 9°50′N area.This project is supported by National Science Foundation grants OCE-1834797, OCE-1949485, OCE-194893, OCE-1949938, and by Scripps Institution of Oceanography's David DeLaCour Endowment Fund

Subseafloor microbial communities in hydrogen-rich vent fluids from hydrothermal systems along the Mid-Cayman Rise

© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Environmental Microbiology 18 (2016): 1970–1987, doi:10.1111/1462-2920.13173.Warm fluids emanating from hydrothermal vents can be used as windows into the rocky subseafloor habitat and its resident microbial community. Two new vent systems on the Mid-Cayman Rise each exhibits novel geologic settings and distinctively hydrogen-rich vent fluid compositions. We have determined and compared the chemistry, potential energy yielding reactions, abundance, community composition, diversity, and function of microbes in venting fluids from both sites: Piccard, the world's deepest vent site, hosted in mafic rocks; and Von Damm, an adjacent, ultramafic-influenced system. Von Damm hosted a wider diversity of lineages and metabolisms in comparison to Piccard, consistent with thermodynamic models that predict more numerous energy sources at ultramafic systems. There was little overlap in the phylotypes found at each site, although similar and dominant hydrogen-utilizing genera were present at both. Despite the differences in community structure, depth, geology, and fluid chemistry, energetic modelling and metagenomic analysis indicate near functional equivalence between Von Damm and Piccard, likely driven by the high hydrogen concentrations and elevated temperatures at both sites. Results are compared with hydrothermal sites worldwide to provide a global perspective on the distinctiveness of these newly discovered sites and the interplay among rocks, fluid composition and life in the subseafloor.National Aeronautics and Space Administration Grant Number: NNX09AB756; Alfred P. Sloan Foundation; NSF Grant Number: OCE10618

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A Genetic Signature of Spina Bifida Risk from Pathway-Informed Comprehensive Gene-Variant Analysis

Despite compelling epidemiological evidence that folic acid supplements reduce the frequency of neural tube defects (NTDs) in newborns, common variant association studies with folate metabolism genes have failed to explain the majority of NTD risk. The contribution of rare alleles as well as genetic interactions within the folate pathway have not been extensively studied in the context of NTDs. Thus, we sequenced the exons in 31 folate-related genes in a 480-member NTD case-control population to identify the full spectrum of allelic variation and determine whether rare alleles or obvious genetic interactions within this pathway affect NTD risk. We constructed a pathway model, predetermined independent of the data, which grouped genes into coherent sets reflecting the distinct metabolic compartments in the folate/one-carbon pathway (purine synthesis, pyrimidine synthesis, and homocysteine recycling to methionine). By integrating multiple variants based on these groupings, we uncovered two provocative, complex genetic risk signatures. Interestingly, these signatures differed by race/ethnicity: a Hispanic risk profile pointed to alterations in purine biosynthesis, whereas that in non-Hispanic whites implicated homocysteine metabolism. In contrast, parallel analyses that focused on individual alleles, or individual genes, as the units by which to assign risk revealed no compelling associations. These results suggest that the ability to layer pathway relationships onto clinical variant data can be uniquely informative for identifying genetic risk as well as for generating mechanistic hypotheses. Furthermore, the identification of ethnic-specific risk signatures for spina bifida resonated with epidemiological data suggesting that the underlying pathogenesis may differ between Hispanic and non-Hispanic groups

Semi-groupe de Lie associé à un cône symétrique

Volcanic arcs are the surface expression of magmatic systems that result from the subduction of mostly oceanic lithosphere at convergent plate boundaries. Arcs with a submarine component include intraoceanic arcs and island arcs that span almost 22,000 km on Earth\u27s surface, the vast majority of which are located in the Pacific region. Hydrothermal systems hosted by submarine arc volcanoes commonly contain a large component of magmatic fluid. This magmatic-hydrothermal signature, coupled with the shallow water depths of arc volcanoes and their high volatile contents, strongly influences the chemistry of the fluids and resulting mineralization and likely has important consequences for the biota associated with these systems. The high metal contents and very acidic fluids in these hydrothermal systems are thought to be important analogs to numerous porphyry copper and epithermal gold deposits mined today on land

TMEM106B is a genetic modifier of frontotemporal lobar degeneration with C9orf72 hexanucleotide repeat expansions

Hexanucleotide repeat expansions in chromosome 9 open reading frame 72 (C9orf72) have recently been linked to frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis, and may be the most common genetic cause of both neurodegenerative diseases. Genetic variants at TMEM106B influence risk for the most common neuropathological subtype of FTLD, characterized by inclusions of TAR DNA-binding protein of 43 kDa (FTLD-TDP). Previous reports have shown that TMEM106B is a genetic modifier of FTLD-TDP caused by progranulin (GRN) mutations, with the major (risk) allele of rs1990622 associating with earlier age at onset of disease. Here, we report that rs1990622 genotype affects age at death in a single-site discovery cohort of FTLD patients with C9orf72 expansions (n = 14), with the major allele correlated with later age at death (p = 0.024). We replicate this modifier effect in a 30-site international neuropathological cohort of FTLD-TDP patients with C9orf72 expansions (n = 75), again finding that the major allele associates with later age at death (p = 0.016), as well as later age at onset (p = 0.019). In contrast, TMEM106B genotype does not affect age at onset or death in 241 FTLD-TDP cases negative for GRN mutations or C9orf72 expansions. Thus, TMEM106B is a genetic modifier of FTLD with C9orf72 expansions. Intriguingly, the genotype that confers increased risk for developing FTLD-TDP (major, or T, allele of rs1990622) is associated with later age at onset and death in C9orf72 expansion carriers, providing an example of sign epistasis in human neurodegenerative disease