Continental-scale niche differentiation of dominant topsoil archaea in drylands

15 págs.- 6 figuras.- 75 referenciasArchaea represent a diverse group of microorganisms often associated with extreme environments. However, an integrated understanding of biogeographical patterns of the specialist Haloarchaea and the potential generalist ammonia-oxidizing archaea (AOA) across large-scale environmental gradients remains limited. We hypothesize that niche differentiation determines their distinct distributions along environmental gradients. To test the hypothesis, we use a continental-scale research network including 173 dryland sites across northern China. Our results demonstrate that Haloarchaea and AOA dominate topsoil archaeal communities. As hypothesized, Haloarchaea and AOA show strong niche differentiation associated with two ecosystem types mainly found in China's drylands (i.e. deserts vs. grasslands), and they differ in the degree of habitat specialization. The relative abundance and richness of Haloarchaea are higher in deserts due to specialization to relatively high soil salinity and extreme climates, while those of AOA are greater in grassland soils. Our results further indicate a divergence in ecological processes underlying the segregated distributions of Haloarchaea and AOA. Haloarchaea are governed primarily by environmental-based processes while the more generalist AOA are assembled mostly via spatial-based processes. Our findings add to existing knowledge of large-scale biogeography of topsoil archaea, advancing our predictive understanding on changes in topsoil archaeal communities in a drier world.This research was supported by the National Natural Science Foundation of China (Nos. 31700463 and 31770430), National Scientific and Technological Program on Basic Resources Investigation (No. 2019FY102002), Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment, China (No. 2019HJ2096001006), the Top Leading Talents in Gansu Province to J.D. and the Innovation Base Project of Gansu Province (No. 20190323). J.C.S. was supported by the U.S. Department of Energy-BER program, as part of an Early Career Award to J.C.S. at the Pacific Northwest National Laboratory (PNNL), a multiprogram national laboratory operated by Battelle for the US Department of Energy under Contract DEAC05-76RL01830. M.D.-B. acknowledges support from the Spanish Ministry of Science and Innovation for the I +-D + i project PID2020-115813RA-I00 funded by MCIN/AEI/10.13039/501100011033. M.D.-B. is also supported by a project of the Fondo Europeo de Desarrollo Regional (FEDER) and the Consejería de Transformacion Economica, Industria, Conocimiento y Universidades of the Junta de Andalucía (FEDER Andalucía 2014–2020 Objetivo tematico ‘01 - Refuerzo de la investigacion, el desarrollo tecnologico y la innovacion’) associated with the research project P20_00879 (ANDABIOMA).Peer reviewe

Aridity-driven shift in biodiversity–soil multifunctionality relationships

From Springer Nature via Jisc Publications RouterHistory: received 2021-01-07, accepted 2021-08-12, registration 2021-08-25, pub-electronic 2021-09-09, online 2021-09-09, collection 2021-12Publication status: PublishedFunder: National Natural Science Foundation of China (National Science Foundation of China); doi: https://doi.org/10.13039/501100001809; Grant(s): 31770430Abstract: Relationships between biodiversity and multiple ecosystem functions (that is, ecosystem multifunctionality) are context-dependent. Both plant and soil microbial diversity have been reported to regulate ecosystem multifunctionality, but how their relative importance varies along environmental gradients remains poorly understood. Here, we relate plant and microbial diversity to soil multifunctionality across 130 dryland sites along a 4,000 km aridity gradient in northern China. Our results show a strong positive association between plant species richness and soil multifunctionality in less arid regions, whereas microbial diversity, in particular of fungi, is positively associated with multifunctionality in more arid regions. This shift in the relationships between plant or microbial diversity and soil multifunctionality occur at an aridity level of ∼0.8, the boundary between semiarid and arid climates, which is predicted to advance geographically ∼28% by the end of the current century. Our study highlights that biodiversity loss of plants and soil microorganisms may have especially strong consequences under low and high aridity conditions, respectively, which calls for climate-specific biodiversity conservation strategies to mitigate the effects of aridification

Rutacecarpine Inhibits Angiogenesis by Targeting the VEGFR2 and VEGFR2-Mediated Akt/mTOR/p70s6k Signaling Pathway

This study aimed to investigate the effect of Ru (Rut) on angiogenesis, and the underlying regulation mechanism of signal transduction. 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT) assay, adhesion inhibition experiment, migration inhibition experiment, and chick embryo chorioallantoic membrane (CAM) assays were performed on models of angiogenesis. The potential targets of rutaecarpine (Ru) were reverse screened with Discovery Studio 2017. The interaction between the compound and target were detected by surface plasmon resonance (SPR), enzyme-activity experiment, and Western blot assay. The obtained results confirmed that Ru exhibited modest inhibitory activity against human umbilical vein endothelial cells (HUVECs) (IC50 =16.54 ± 2.4 μM) and remarkable inhibitive effect against the migration and adhesion of HUVECs, as well as significant anti-angiogenesis activities in the CAM assay. The possible targets of vascular endothelial growth factor receptor 2 (VEGFR2) were identified by computer-aided simulation. Results showed a good binding relationship between the ligand and target through molecular docking, and this relationship was confirmed by SPR analysis. Furthermore, enzyme-activity experiment and western blot assay showed that Ru remarkably inhibited the activity of VEGFR2 and blocked the VEGFR2-mediated Akt/ (mTOR)/p70s6k signaling pathway in vitro. Ru can be a potential drug candidate for cancer prevention and cancer therapy

Hydrogen production coupled with water and organic oxidation based on layered double hydroxides

Abstract Hydrogen production via electrochemical water splitting is one of the most green and promising ways to produce clean energy and address resource crisis, but still suffers from low efficiency and high cost mainly due to the sluggish oxygen evolution reaction (OER) process. Alternatively, electrochemical hydrogen‐evolution coupled with alternative oxidation (EHCO) has been proposed as a considerable strategy to improve hydrogen production efficiency combined with the production of high value‐added chemicals. Although with these merits, high‐efficient electrocatalysts are always needed in practical operation. Typically, layered double hydroxides (LDHs) have been developed as a large class of advanced electrocatalysts toward both OER and EHCO with high efficiency and stability. In this review, we have summarized the latest progress of hydrogen production from the perspectives of designing efficient LDHs‐based electrocatalysts for OER and EHCO. Particularly, the influence of structure design and component regulation on the efficiency of their electrocatalytic process have been discussed in detail. Finally, we look forward to the challenges in the field of hydrogen production via electrochemical water splitting coupled with organic oxidation, such as the mechanism, selected oxidation as well as system design, hoping to provide certain inspiration for the development of low‐cost hydrogen production technology

Bulk Acoustic Wave Characteristics of Pseudo Lateral-Field-Excitation on LGT Single Crystal for Liquid Phase Sensing

In the present study, pseudo lateral-field-excitation (LFE) bulk acoustic wave characteristics on LGT crystals are investigated to increase the sensitivity of LFE devices on the liquid characteristic variations. The cut orientation of LGT crystals for pseudo-LFE is investigated and verified experimentally. For an LFE device in the pseudo-LFE mode, the thickness shear mode wave is excited by the thickness field rather than the lateral field. The present work shows that when the (yxl) 13.8° LGT plate is excited by the electric field parallel to the crystallographic axis x, it operates in the pseudo-LFE mode. Moreover, characteristics of devices including the sensitivity and impedance are investigated. The present work shows that sensitivity of LFE devices to variation of the conductivity and permittivity of the aqueous solution are 9 and 3.2 times higher than those for AT-cut quartz crystal based devices, respectively. Furthermore, it has been found that the sensitivity of the LGT LFE sensor to liquid acoustic viscosity variations is 1.4 times higher than the one for the AT-cut quartz sensor. The results are a critical basis of designing high-performance liquid phase sensors by using pseudo-LFE devices

Data submit -2017.11.28

The data collected site was located at HBAMERS (latitude 37°37' N and longitude 101°12' E). The research station lies at 3200 m a.s.l on the Qinghai-Tibet plateau and is subjected to a typical plateau continental climate, with short cool summers and long cold winters. Mean annual temperature is 2 ℃ and mean annual precipitation is 500 mm; with over 80% of precipitation falling during the summer months from June to August. The experiment was conducted in an alpine meadow dominated by Kobresia humilis, Festuca sinensis, Elymus nutans, Poa pratensis, Stipa purpurea, Carex tristachya, Gentiana straminea, Potentilla nivea and Gentiana farreri. Soil type is Gelic Cambisol with an average thickness of 0.65 m

Data from: Ecosystem nitrogen retention is regulated by plant community trait interactions with nutrient status in an alpine meadow

1.Biotic nitrogen (N) retention is an important ecosystem function in the context of ongoing land use intensification, N deposition and global warming. However, a paucity of experimental evidence limits understanding of how different plant community components influence N retention in terrestrial ecosystems. 2.In this investigation we conducted a 15N labelling experiment to test how plant community properties, including plant species richness/diversity, dominance and functional traits, influence plant N uptake and retention under different nutrient availabilities. A three-year experiment examined the effects of adding N (10 g N m−2 year−1) and phosphorus (P) (5 g P m−2 year−1) to an alpine meadow on the Qinghai-Tibetan Plateau. 3.Results show that 15N retention increased with the addition of N and P; the addition of P produced the largest increase of 15N retention in plant and soil N pools. Changes in soil nutrient conditions also facilitated different plant community controls on ecosystem N retention. Ecosystem 15N retention was influenced by species richness and root biomass in the control plots; whereas the N addition treatment showed an important effect of community-weighted means (CWM) of specific leaf area (SLA), and plots with additional P recorded lower CWM of root nitrogen content (root N) and larger CWM root:shoot ratios (R/S) as important determinants. 4.Synthesis. Ecosystem N retention was influenced by conservative and exploitative plant species and/or their traits under N deficient and abundant conditions, respectively, whereas species richness and community plant biomass were most influential under control conditions. The discovery of an interaction between plant community traits and nutrient biogeochemistry as a mechanism for ecosystem N retention offers a means to predict how vegetation in alpine meadow ecosystems will respond to expected global change

Insights into the Allosteric Effect of SENP1 Q597A Mutation on the Hydrolytic Reaction of SUMO1 via an Integrated Computational Study

Small ubiquitin-related modifier (SUMO)-specific protease 1 (SENP1) is a cysteine protease that catalyzes the cleavage of the C-terminus of SUMO1 for the processing of SUMO precursors and deSUMOylation of target proteins. SENP1 is considered to be a promising target for the treatment of hepatocellular carcinoma (HCC) and prostate cancer. SENP1 Gln597 is located at the unstructured loop connecting the helices α4 to α5. The Q597A mutation of SENP1 allosterically disrupts the hydrolytic reaction of SUMO1 through an unknown mechanism. Here, extensive multiple replicates of microsecond molecular dynamics (MD) simulations, coupled with principal component analysis, dynamic cross-correlation analysis, community network analysis, and binding free energy calculations, were performed to elucidate the detailed mechanism. Our MD simulations showed that the Q597A mutation induced marked dynamic conformational changes in SENP1, especially in the unstructured loop connecting the helices α4 to α5 which the mutation site occupies. Moreover, the Q597A mutation caused conformational changes to catalytic Cys603 and His533 at the active site, which might impair the catalytic activity of SENP1 in processing SUMO1. Moreover, binding free energy calculations revealed that the Q597A mutation had a minor effect on the binding affinity of SUMO1 to SENP1. Together, these results may broaden our understanding of the allosteric modulation of the SENP1−SUMO1 complex

Piezoelectric Resonators Excited by Lateral Electric Fields Based on a LiTaO3 Single Crystal

In the present study, piezoelectric resonators under lateral field excitation (LFE) based on a LiTaO3 single crystal are modeled and analyzed. An electrically forced vibration study is employed to acquire the motional capacitance curve and vibration mode shapes. A finite element approach is utilized to investigate the influences of some basic parameters, such as the electrode/plate mass ratio, electrode gap, and electrode width on resonance characteristics. In addition, the design criteria for the gap and width of the electrode of the LiTaO3 LFE resonators are obtained by analyzing the effects of those parameters on vibration strain distributions. The obtained results are essential for designing LFE piezoelectric resonators by using a LiTaO3 single crystal

Water Content Quantitatively Affects Metabolic Rates over the Course of Plant Ontogeny

Plant metabolism determines the structure and dynamics of ecological systems across many different scales. The metabolic theory of ecology quantitatively predicts the scaling of metabolic rate as a function of body size and temperature. However, the role of tissue water content has been neglected even though hydration significantly affects metabolism, and thus ecosystem structure and functioning. Here, we use a general model based on biochemical kinetics to quantify the combined effects of water content, body size and temperature on plant metabolic rates. The model was tested using a comprehensive dataset from 205 species across 10 orders of magnitude in body size from seeds to mature large trees. We show that water content significantly influences mass-specific metabolic rates as predicted by the model. The scaling exponents of whole-plant metabolic rate vs body size numerically converge onto 1.0 after water content is corrected regardless of body size or ontogenetic stage. The model provides novel insights into how water content together with body size and temperature quantitatively influence plant growth and metabolism, community dynamics and ecosystem energetics