Identification of transcription-factor genes expressed in the Arabidopsis female gametophyte

Dongfang Wang, Changqing Zhang, David J. Hearn, Il-HO Kang, megan I. Skaggs, Karen S. Schumaker, and Ramin Yadegari are with the School of Plant Sciences, University of Arizona, Tucson, Arizona 85721-0036, USA -- Il-Ho Kang, Jayson A. Punwani, and Gary N. Drews are with the Department of Biology, University of Utah, Salt Lake City, Utah 84112-0840, USA -- Changqing Zhang is with The Section of Molecular, Cell and Developmental Biology, University of Texas at Austin, Austin, Texas 78712-0159, USA -- David J. Hearn is with the Department of Biological Sciences, Towson University, Towson, Maryland 21252-0001, USA -- Il-Ho Kang is with the Department of Horticulture, Iowa State University, Ames, Iowa 50011-1100, USA --Jayson A. Punwani is with the Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3280, USABackground In flowering plants, the female gametophyte is typically a seven-celled structure with four cell types: the egg cell, the central cell, the synergid cells, and the antipodal cells. These cells perform essential functions required for double fertilization and early seed development. Differentiation of these distinct cell types likely involves coordinated changes in gene expression regulated by transcription factors. Therefore, understanding female gametophyte cell differentiation and function will require dissection of the gene regulatory networks operating in each of the cell types. These efforts have been hampered because few transcription factor genes expressed in the female gametophyte have been identified. To identify such genes, we undertook a large-scale differential expression screen followed by promoter-fusion analysis to detect transcription-factor genes transcribed in the Arabidopsis female gametophyte. Results Using quantitative reverse-transcriptase PCR, we analyzed 1,482 Arabidopsis transcription-factor genes and identified 26 genes exhibiting reduced mRNA levels in determinate infertile 1 mutant ovaries, which lack female gametophytes, relative to ovaries containing female gametophytes. Spatial patterns of gene transcription within the mature female gametophyte were identified for 17 transcription-factor genes using promoter-fusion analysis. Of these, ten genes were predominantly expressed in a single cell type of the female gametophyte including the egg cell, central cell and the antipodal cells whereas the remaining seven genes were expressed in two or more cell types. After fertilization, 12 genes were transcriptionally active in the developing embryo and/or endosperm. Conclusions We have shown that our quantitative reverse-transcriptase PCR differential-expression screen is sufficiently sensitive to detect transcription-factor genes transcribed in the female gametophyte. Most of the genes identified in this study have not been reported previously as being expressed in the female gametophyte. Therefore, they might represent novel regulators and provide entry points for reverse genetic and molecular approaches to uncover the gene regulatory networks underlying female gametophyte development.Cellular and Molecular [email protected]

Experimental Study on a Finned-tube Internally Cooled Contactor for Liquid Desiccant air conditioning systems with Ionic Liquid

This paper presents an experimental study on the dehumidification performance of a finned-tube internally cooled contactor as compared to that of an adiabatic contactor in liquid desiccant air conditioning systems with ionic liquid. The contactor is the most significant component in liquid desiccant systems; it is the component responsible for the dehumidification and regeneration processes. When air and absorptive solution are in contact in the contactor, absorption/desorption of the solution occurs due to the difference in vapor pressure. This results to the transfer of heat and mass between the air and solution. Conventionally, adiabatic contactors, which only have air and solution interaction are being used for the dehumidification/regeneration process of liquid desiccant systems. On the contrary, internally cooled contactors are being suggested as these have the possibility of realizing a more efficient dehumidification process. This is possible as internally cooled contactors can maintain the dehumidification ability of the absorptive solution by utilizing cooling water as a third fluid in the contactor for removing the heat of absorption. In other words, internally cooled contactors have the possibility of reducing the circulating solution mass flux and, hence, the power consumption of the solution pumps. In this research, the dehumidification ability of a finned-tube internally cooled contactor is experimentally studied. In order to increase the heat transfer ability of the cooling water, aluminium, which has a high thermal conductivity, is used as the contactor material. Although Lithium Chloride solution is a conventional absorptive solution, it corrodes aluminum; therefore, ionic liquid is used as the absorptive solution in this experiment since it does not corrode aluminum. Research on this new combination of contactor and absorptive solution is not extensively done at present; this research provides new and valuable information for future research. Moreover, the results were compared with that of an adiabatic contactor in order to analyze the difference in dehumidification ability between the two of contactors. As a result, outlet air dew point temperatures lower than the cooling water temperature were achieved, which emphasize the advantage of liquid desiccant air conditioning system to conventional vapor compression air conditioning systems. Furthermore, the outlet air dew point temperatures of the internally cooled contactor were lower than that of adiabatic contactor for low mass fluxes, and converged at higher solution mass flux. This suggests the significant effect of the cooling water to the dehumidification ability of the absorptive solution. Experimental data of the dehumidification ability of this new combination of aluminum finned-tube contactor and ionic liquid solution are promising for further research about the structure of contactors. These results provide significant information for the improvement in the design of liquid desiccant air conditioning systems

Slow-Release Formulation of Cowpea Mosaic Virus for In Situ Vaccine Delivery to Treat Ovarian Cancer.

The plant viral nanoparticle cowpea mosaic virus (CPMV) is shown to be an effective immunotherapy for ovarian cancer when administered as in situ vaccine weekly, directly into the intraperitoneal (IP) space in mice with disseminated tumors. While the antitumor efficacy is promising, the required frequency of administration may pose challenges for clinical implementation. To overcome this, a slow release formulation is developed. CPMV and polyamidoamine generation 4 dendrimer form aggregates (CPMV-G4) based on electrostatic interactions and as a function of salt concentration, allowing for tailoring of aggregate size and release of CPMV. The antitumor efficacy of a single administration of CPMV-G4 is compared to weekly administration of soluble CPMV in a mouse model of peritoneal ovarian cancer and found to be as effective at reducing disease burden as more frequent administrations of soluble CPMV; a single injection of soluble CPMV, does not significantly slow cancer development. The ability of CPMV-G4 to control tumor growth following a single injection is likely due to the continued presence of CPMV in the IP space leading to prolonged immune stimulation. This enhanced retention of CPMV and its antitumor efficacy demonstrates the potential for viral-dendrimer hybrids to be used for delayed release applications

DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements

Supplementary file S2. Accession numbers and URLs for genome assembly, transcriptome and methylome data that used in this project. (DOCX 101 kb

Heparan sulphate synthetic and editing enzymes in ovarian cancer

Several angiogenic growth factors including fibroblast growth factors 1 and 2 (FGF1 and FGF2) depend on heparan sulphate (HS) for biological activity. We previously showed that all cellular elements in ovarian tumour tissue synthesised HS but biologically active HS (i.e. HS capable of binding FGF2 and its receptor) was confined to ovarian tumour endothelium. In this study, we have sought to explain this observation. Heparan sulphate sulphotransferases 1 and 2 (HS6ST1 and HS6ST2) attach sulphate groups to C-6 of glucosamine residues in HS that are critical for FGF2 activation. These enzymes were strongly expressed by tumour cells, but only HS6ST1 was found in endothelial cells. Immunostaining with the 3G10 antibody of tissue sections pretreated with heparinases indicated that HS proteoglycans were produced by tumour and endothelial cells. These results indicated that, in contrast to the endothelium, HS produced by tumour cells may be modified by cell-surface heparanase (HPA1) or endosulphatase (SULF). Protein and RNA analysis revealed that HPA1 was strongly expressed by ovarian tumour cells in eight of ten specimens examined. HSULF-1, which removes specific 6-O-sulphate groups from HS, was abundant in tumour cells but weakly expressed in the endothelium. If this enzyme was responsible for the lack of biologically active HS on the tumour cell surface, we would expect exogenous FGF2 binding to be preserved; we showed previously that this was indeed the case although FGF2 binding was reduced compared to the endothelium and stroma. Thus, the combined effects of heparanase and HSULF could account for the lack of biologically active HS in tumour cells rather than deficiencies in the biosynthetic enzymes

Phase Ib study of CP-868,596, a PDGFR inhibitor, combined with docetaxel with or without axitinib, a VEGFR inhibitor

BACKGROUND: Tumoural interstitial hypertension, possibly modulated by platelet-derived and vascular endothelial growth factor receptors (PDGFR and VEGFR), may mediate resistance to chemotherapy. METHODS: Forty-eight patients with advanced solid tumours received oral PDGFR inhibitor CP-868,596 (60-100 mg twice daily (BID)) and docetaxel (75-100 mg m⁻²), or CP-868,596 (60 mg BID), docetaxel (75 mg m⁻²), and VEGFR inhibitor axitinib (5 mg BID). RESULTS: The CP-868,596/docetaxel was escalated as above. The CP-868,596/docetaxel/axitinib was not dose escalated because of increased incidence of mucositis-like adverse events (AEs) with concurrent neutropenia relative to that expected for docetaxel. All tested regimens were tolerable, including 100 mg BID CP-868,596 (recommended phase II dose) plus 100 mg m⁻² docetaxel (maximum approved dose). Most treatment-emergent AEs were mild-moderate and reversible, commonly including nausea, diarrhoea, vomiting, constipation, fatigue, and anaemia (CP-868,596/docetaxel), and hypertension, lethargy, diarrhoea, and fatigue (CP-868,596/docetaxel/axitnib). Pharmacokinetics were unaffected by co-administration. Twenty-one patients achieved stable disease, including all seven evaluable on CP-868,596/docetaxel/axitinib. All nine CP-868,596/docetaxel/axitinib patients received therapy for a median of six (range, 3-16) cycles. CONCLUSIONS: The CP-868,596/docetaxel was well tolerated, but increased efficacy was not observed. Addition of axitinib delivered greater benefits than expected in the number of patients achieving prolonged stable disease with a moderate increase in AEs