Water Quality Conditions and Restoration of Submerged Aquatic Vegetation (SAV) in the Tidal Freshwater James River 2007

In 2007, wild celery (Vallisneria americana) and water stargrass (Heteranthera dubia) were planted at sites in the Hopewell region of the tidal James River. The SA V transplants from 2007 and previous years were monitoried by the Virginia Institute of Marine Science (VIMS) for survivorship and growth throughout the growing season. Nursery ponds were constructed at the VIMS campus for development of SA V transplant propagules. Water quality sampling was conducted at bi-weekly intervals throughout the year for water column nutrients, chlorophyll a, suspended solids, water transparency and other chemical and physical constituents important for SAV growth. Continuous water quality sampling was also conducted along the James River from the mouth of the Chickahominy River to the upstream limits of tidal water at Richmond. Objectives ofthis restoration and water quality study were to: 1) expand the SAV transplanted plots within the study sites previously transplanted; 2) conduct water quality sampling to determine the state of water quality in the tidal freshwater James relative to current water quality standards and SAV habitat requirements; 3) evaluate SAV transplant performance and compare to water quality conditions; 4) monitor SA V re-growth in the upper tidal James River. SA V transplant growth and survival occurred at all James River field sites at depths of approximately 0.4 m below low water. Seeds obtained from wild stock and planted within the exclosures germinated and produced adult plants in 2006 and these demonstrated re-growth in 2007. Water stargrass stocks originally collected from non-tidal areas of the James and planted into grow out nursery ponds at VIMS in 2006, along with nursery grown wild celery were replanted into tidal sites in 2007. Both species transplanted in 2007 also were successful and grew throughout 2007. SAV growth throughout the tidal freshwater James continued to expand in 2007 reaching over 300 acres. Powell\u27s Creek plantings continued to expand with coontail (Ceratophyllum demersum) plantings mixed with recruited Hydrilla (Hydrilla verticilata) reaching over 60 acres. Water quality monitoring in the tidal James River in 2007 indicated that turbidity levels were again suitable for SA V growth to depths of 0.5 m in most areas. Seasonal light levels were at or near water clarity criteria for most transplant sites. Turbidity levels were highest in the upper section of the JMSTF1 segment and lower section of the JMSTF2 segment. When integrated along each of the freshwater segments (JMSTF1 and JMSTF2) using continuous underway spatial sampling, turbidity goals were met for all eight SA V growing season cruises. Summertime levels of chlorophyll were the highest recorded over the past five years. When integrated across the entire segments, average concentrations were found to be well above spring and summer limits of 15-23 Jlg r 1 and 10-15 Jlg r 1 for JMSTF1 and JMSTF2 respectively. Similarly, average seasonal concentrations at the transplant sites were above SA V growing season goals of 15 Jlg r1 • Nutrient levels generally were comparable with earlier years\u27 monitoring results, although dissolved ammonium concentrations were at or below detection for most of the year and a decreasing trend has been evident since 2002. Similarly dissolved inorganic phosphate (DIP) levels were very low throughout much of the year and all transplant sites met SAV growing season habitat requirements for DIP. Overall, the success of the SA V restoration in the tidal freshwater James River is encouraging, but the high levels of chlorophyll are of concern and warrant continued monitoring

Comprehensive analysis of Hox gene expression in the amphipod crustacean Parhyale hawaiensis.

Hox genes play crucial roles in establishing regional identity along the anterior-posterior axis in bilaterian animals, and have been implicated in generating morphological diversity throughout evolution. Here we report the identification, expression, and initial genomic characterization of the complete set of Hox genes from the amphipod crustacean Parhyale hawaiensis. Parhyale is an emerging model system that is amenable to experimental manipulations and evolutionary comparisons among the arthropods. Our analyses indicate that the Parhyale genome contains a single copy of each canonical Hox gene with the exception of fushi tarazu, and preliminary mapping suggests that at least some of these genes are clustered together in the genome. With few exceptions, Parhyale Hox genes exhibit both temporal and spatial colinearity, and expression boundaries correlate with morphological differences between segments and their associated appendages. This work represents the most comprehensive analysis of Hox gene expression in a crustacean to date, and provides a foundation for functional studies aimed at elucidating the role of Hox genes in arthropod development and evolution

Classification of Singular Fibres on Rational Elliptic Surfaces in Characteristic Three

We determine and list all possible configurations of singular fibres on rational elliptic surfaces in characteristic three. In total, we find that 267 distinct configurations exist. This result complements Miranda and Persson's classification in characteristic zero, and Lang's classification in characteristic two.Comment: 40 Pages. Minor typos correcte

Size matters: variations in seagrass seed size at local scales affects seed performance

Seed size can have an impact on angiosperm reproductive fitness. Ecological theory predicts plants that will produce larger seeds in stressful environments to increase the chances of seedling survival and numerous small seeds in favourable conditions to increase the number of recruits. We measured seed morphology of the seagrass Heterozostera nigricaulis from four populations under differing environmental conditions in South East Australia. Seed size and mass among sites showed consistent differences over four flowering seasons. Seeds from exposed, ephemeral meadows (Blairgowrie, Edwards Point) were 19%–53% heavier than those from larger, stable meadows at more sheltered sites (Swan Bay, Point Henry). Overall, heavier seeds from exposed sites performed better in germination experiments and persisted (remained viable) longer compared to small seeds from sheltered sites. Seeds from sheltered sites showed contrasting levels of seed performance. Small seeds from Swan Bay had the lowest germination but the proportion of viable seeds after 12 months were much higher (41%) than similar sized seeds from Point Henry (0%). There are clear life history benefits of large seeds that facilitate seed persistence and germination at exposed sites; however, the performance of smaller seeds varied between sites and may be a function of other site-specific advantages

The Dark Energy Survey Data Management System

The Dark Energy Survey collaboration will study cosmic acceleration with a 5000 deg2 griZY survey in the southern sky over 525 nights from 2011-2016. The DES data management (DESDM) system will be used to process and archive these data and the resulting science ready data products. The DESDM system consists of an integrated archive, a processing framework, an ensemble of astronomy codes and a data access framework. We are developing the DESDM system for operation in the high performance computing (HPC) environments at NCSA and Fermilab. Operating the DESDM system in an HPC environment offers both speed and flexibility. We will employ it for our regular nightly processing needs, and for more compute-intensive tasks such as large scale image coaddition campaigns, extraction of weak lensing shear from the full survey dataset, and massive seasonal reprocessing of the DES data. Data products will be available to the Collaboration and later to the public through a virtual-observatory compatible web portal. Our approach leverages investments in publicly available HPC systems, greatly reducing hardware and maintenance costs to the project, which must deploy and maintain only the storage, database platforms and orchestration and web portal nodes that are specific to DESDM. In Fall 2007, we tested the current DESDM system on both simulated and real survey data. We used Teragrid to process 10 simulated DES nights (3TB of raw data), ingesting and calibrating approximately 250 million objects into the DES Archive database. We also used DESDM to process and calibrate over 50 nights of survey data acquired with the Mosaic2 camera. Comparison to truth tables in the case of the simulated data and internal crosschecks in the case of the real data indicate that astrometric and photometric data quality is excellent.Comment: To be published in the proceedings of the SPIE conference on Astronomical Instrumentation (held in Marseille in June 2008). This preprint is made available with the permission of SPIE. Further information together with preprint containing full quality images is available at http://desweb.cosmology.uiuc.edu/wik

Seed germination in a southern Australian temperate seagrass

In a series of experiments, seeds from a temperate seagrass species, Zostera nigricaulis collected in Port Phillip Bay, Victoria, Australia were exposed to a range of salinities (20 PSU pulse/no pulse, 25 PSU, 30 PSU, 35 PSU), temperatures (13 °C, 17 °C, 22 °C), burial depths (0 cm, 1 cm, 2 cm) and site specific sediment characteristics (fine, medium, coarse) to quantify their impacts on germination rate and maximum overall germination. In southern Australia the seagrass Z. nigricaulis is a common subtidal species; however, little is known about the factors that affect seed germination which is a potential limiting factor in meadow resilience to natural and anthropogenic disturbances. Overall seed germination was low (<20%) with germination decreasing to <10% when seeds were placed in the sediment. When germination of Z. nigricaulis seeds was observed, it was enhanced (greater overall germination and shorter time to germination) when seeds were exposed to a 20 PSU pulse for 24 h, maintained at salinity of 25 PSU, temperatures <13 °C, in sediments with fine or medium grain sand and buried at a depth of <1 cm. These results indicate that germination of Z. nigricaulis seeds under in situ conditions may be seasonally limited by temperatures in southern Australia. Seed germination may be further restricted by salinity as freshwater pulses reaching 20 PSU are typically only observed in Port Phillip Bay following large scale rainfall events. As a result, these populations may be particularly susceptible to disturbance with only a seasonally limited capacity for recovery

Chronic Ethanol Consumption Alters Glucocorticoid Receptor Isoform Expression in Stress Neurocircuits and Mesocorticolimbic Brain Regions of Alcohol-Preferring Rats

Evidence suggests the hypothalamic-pituitary-adrenal (HPA) axis is involved in Alcohol Use Disorders (AUDs), which might be mediated by an imbalance of glucocorticoid receptor (GR), GRα and GRβ, activity. GRβ antagonizes the GRα isoform to cause glucocorticoid (GC) resistance. In the present study, we aimed to investigate the effects of chronic continuous free-choice access to ethanol on GR isoform expression in subregions of the mesocorticolimbic reward circuit. Adult male alcohol-preferring (P) rats had concurrent access to 15% and 30% ethanol solutions, with ad lib access to lab chow and water, for six weeks. Quantitative Real-time PCR (RT-PCR) analysis showed that chronic ethanol consumption reduced GRα expression in the nucleus accumbens shell (NAcsh) and hippocampus, whereas ethanol drinking reduced GRβ in the nucleus accumbens core (NAcc), prefrontal cortex (PFC), and hippocampus. An inhibitor of GRα, microRNA-124-3p (miR124-3p) was significantly higher in the NAcsh, and GC-induced gene, GILZ, as a measure of GC-responsiveness, was significantly lower. These were not changed in the NAcc. Likewise, genes associated with HPA axis activity were not significantly changed by ethanol drinking [i.e., corticotrophin-releasing hormone (Crh), adrenocorticotrophic hormone (Acth), and proopiomelanocortin (Pomc)] in these brain regions. Serum corticosterone levels were not changed by ethanol drinking. These data indicate that the expression of GRα and GRβ isoforms are differentially affected by ethanol drinking despite HPA-associated peptides remaining unchanged, at least at the time of tissue harvesting. Moreover, the results suggest that GR changes may stem from ethanol-induced GC-resistance in the NAcsh. These findings confirm a role for stress in high ethanol drinking, with GRα and GRβ implicated as targets for the treatment of AUDs

Analyses and Methods of Solid Rocket Motor Material Irradiation at Marshall Space Flight Center

The search for life on other worlds is among humanitys greatest endeavors. Europa represents the most probable location to discover extraterrestrial life in our solar system, owing to its surface composition of ice covering a liquid water ocean, warmed by the tidal forces of its orbit around Jupiter. Unfortunately, the Jovian system hosts the most intense planetary radiation environment in the solar system due to the charged particles, namely electrons and protons, trapped by Jupiters immense magnetic field. Any mission that attempts to approach or land on Europa must survive this radiation environment [Hand et al, 2017]. Radiation effects were identified as a priority risk to the successful development of a de-orbit stage and solid rocket motor (SRM) early in the Europa Lander De-orbit Stage project concept. The effects of primary concern tend to occur very near the outer surface of the SRM. The charged particles deposit their energy quickly and are mostly stopped in the outer metallic case, but a significant portion of radiation penetrates through the bondline and outer propellant regions. High doses of ionizing radiation are known to cause significant changes to mechanical properties of many materials, especially polymers. For polymers such as the rubber-like materials (elastomers) in a solid rocket motor, the primary damage mechanism is known as cross-linking, in which ionization causes the restructuring of the matrix of long polymer chains. Ionization energy breaks the long polymer chains and allows formation of new cross-linked bonding sites. This hardens and often strengthens the polymer, but at the cost of decreased flexibility (or modulus). Propellant, insulation, liner, and pyrotechnic materials were identified as higher risk items, and so were irradiated at Marshall Space Flight Center (MSFC) for investigation of changes in mechanical and ballistic properties. This process required significant levels of analysis to evaluate how the radiation environment evolves within the spacecraft during the mission, and also to evaluate how dose is delivered into test articles within the irradiating facilities