Prediciendo la descomponibilidad de la hojarasca: evaluación de caracteres funcionales de hoja, de broza y de propiedades espectrales de seis especies herbáceas del Mediterráneo

Algunos trabajos han explorado métodos fáciles y rápidos de evaluar la decomponibilidad de la broza de grandes conjuntos de especies. Aquí evaluamos tres de los más utilizados en seis especies mediterráneas herbáceas de diferentes familias y formas de vida: (1) 'caracteres de hojas verdes': caracteres de hojas vivas relacionadas a las estrategias de vida de las plantas; (2) 'caracteres de la broza': respiración de la broza durante incubaciones in vitro y propiedades iniciales de la broza; (3) 'propiedades espectrales de las hojas y de la broza': características espectrales (NIR) de las hojas verdes y de la broza. Analizamos las relaciones entre estos métodos y su consistencia para evaluar la tasa de descomposición de la broza en el campo. Las propiedades espectrales de hojas verdes fueron las más precisas para predecir la descomponibilidad a campo, seguidas por el contenido de materia seca de las hojas (LDMC) y el contenido inicial de compuestos no lábiles de la broza. La descomponibilidad in vitro se correlacionó marginalmente con la descomponibilidad a campo. La selección entre los predictores puede depender, entonces, de los instrumentos disponibles. LDMC es el método más económico y fácil de medir para grandes conjuntos de especies que, a su vez, fue constante dentro de las especies analizadas. Alternativamente, en el caso de tener el equipamiento y las calibraciones disponibles, los espectros NIR de las hojas verdes y de la broza inicial representan un método rápido para estimar la descomponibilidad y calidad de la broza al mismo tiempo. Nuestros resultados confirman evidencias previas que para las especies de sistemas semiáridos caracteres estructurales como LDMC y el contenido de compuestos no lábiles son propiedades importantes en el control de la descomponibilidad de la broza. La validez de nuestras conclusiones para un rango mayor de especies debería probarse en futuros estudios.Several studies attempted to find quick and easy methods to assess litter decomposability. We tested three frequently used methods on 6 Mediterranean herbaceous species from different plant families and life forms: (1) ‘green leaves traits’: traits of living leaves related to the strategies of living plants; (2) ‘litter traits’: litter respiration during in vitro incubation and initial litter properties; and (3) ‘leaf and litter spectral properties’: the spectral characteristics (NIR) of green leaves and litter. We analyzed the relationship between these methods and their consistency to assess litter decomposability in the field. Green leaves spectral properties were the most accurate to predict Several studies attempted to find quick and easy methods to assess litter decomposability. We tested three frequently used methods on 6 Mediterranean herbaceous species from different plant families and life forms: (1) ‘green leaves traits’: traits of living leaves related to the strategies of living plants; (2) ‘litter traits’: litter respiration during in vitro incubation and initial litter properties; and (3) ‘leaf and litter spectral properties’: the spectral characteristics (NIR) of green leaves and litter. We analyzed the relationship between these methods and their consistency to assess litter decomposability in the field. Green leaves spectral properties were the most accurate to predict field decomposability, followed by leaf dry matter content (LDMC) and initial content of non-labile compounds. In vitro decomposability marginally correlated with field decomposability. The selection among these predictors may then depend on the instruments available. LDMC is the easiest and least expensive, and is also a constant trait within species. Alternatively, if available, NIR spectra of green leaves and initial litter represent the quickest method for estimating decomposability and litter quality at the same time. Our findings confirm previous evidence that for species from semi-arid systems structural traits like LDMC and non-labile compounds content are important properties controlling species litter decomposability. The validity of our conclusions when a wider range of species is included remains to be tested. decomposability, followed by leaf dry matter content (LDMC) and initial content of non-labile compounds. In vitro decomposability marginally correlated with field decomposability. The selection among these predictors may then depend on the instruments available. LDMC is the easiest and least expensive, and is also a constant trait within species. Alternatively, if available, NIR spectra of green leaves and initial litter represent the quickest method for estimating decomposability and litter quality at the same time. Our findings confirm previous evidence that for species from semi-arid systems structural traits like LDMC and non-labile compounds content are important properties controlling species litter decomposability. The validity of our conclusions when a wider range of species is included remains to be tested.Fil: Perez Harguindeguy, Natalia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Instituto Multidisciplinario de Biología Vegetal (p); ArgentinaFil: Cortez, Jacques. Centre d´Ecologie Fonctionnelle et Evolutive; FranciaFil: Garnier, Eric. Centre d´Ecologie Fonctionnelle et Evolutive; FranciaFil: Gillon, Dominique. Centre d´Ecologie Fonctionnelle et Evolutive; FranciaFil: Poca, María. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Instituto Multidisciplinario de Biología Vegetal (p); Argentin

Genomics and genetics of <em>Sulfolobus islandicus</em> LAL14/1, a model hyperthermophilic archaeon

The 2 465 177 bp genome of Sulfolobus islandicus LAL14/1, host of the model rudivirus SIRV2, was sequenced. Exhaustive comparative genomic analysis of S. islandicus LAL14/1 and the nine other completely sequenced S. islandicus strains isolated from Iceland, Russia and USA revealed a highly syntenic common core genome of approximately 2 Mb and a long hyperplastic region containing most of the strain-specific genes. In LAL14/1, the latter region is enriched in insertion sequences, CRISPR (clustered regularly interspaced short palindromic repeats), glycosyl transferase genes, toxin–antitoxin genes and MITE (miniature inverted-repeat transposable elements). The tRNA genes of LAL14/1 are preferential targets for the integration of mobile elements but clusters of atypical genes (CAG) are also integrated elsewhere in the genome. LAL14/1 carries five CRISPR loci with 10 per cent of spacers matching perfectly or imperfectly the genomes of archaeal viruses and plasmids found in the Icelandic hot springs. Strikingly, the CRISPR_2 region of LAL14/1 carries an unusually long 1.9 kb spacer interspersed between two repeat regions and displays a high similarity to pING1-like conjugative plasmids. Finally, we have developed a genetic system for S. islandicus LAL14/1 and created ΔpyrEF and ΔCRISPR_1 mutants using double cross-over and pop-in/pop-out approaches, respectively. Thus, LAL14/1 is a promising model to study virus–host interactions and the CRISPR/Cas defence mechanism in Archaea

In vitro and in vivo evidence towards fibronectin’s protective effects against prion infection

A distinctive signature of the prion diseases is the accumulation of the pathogenic isoform of the prion protein, PrPSc, in the central nervous system of prion-affected humans and animals. PrPSc is also found in peripheral tissues, raising concerns about the potential transmission of pathogenic prions through human food supplies and posing a significant risk to public health. Although muscle tissues are considered to contain levels of low prion infectivity, it has been shown that myotubes in culture efficiently propagate PrPSc. Given the high consumption of muscle tissue, it is important to understand what factors could influence the establishment of a prion infection in muscle tissue. Here we used in vitro myotube cultures, differentiated from the C2C12 myoblast cell line (dC2C12), to identify factors affecting prion replication. A range of experimental conditions revealed that PrPSc is tightly associated with proteins found in the systemic extracellular matrix, mostly fibronectin (FN). The interaction of PrPSc with FN decreased prion infectivity, as determined by standard scrapie cell assay. Interestingly, the prion-resistant reserve cells in dC2C12 cultures displayed a FN-rich extracellular matrix while the prion-susceptible myotubes expressed FN at a low level. In agreement with the in vitro results, immunohistopathological analyses of tissues from sheep infected with natural scrapie demonstrated a prion susceptibility phenotype linked to an extracellular matrix with undetectable levels of FN. Conversely, PrPSc deposits were not observed in tissues expressing FN. These data indicate that extracellular FN may act as a natural barrier against prion replication and that the extracellular matrix composition may be a crucial feature determining prion tropism in different tissues

Assessing the human immune system through blood transcriptomics

Blood is the pipeline of the immune system. Assessing changes in transcript abundance in blood on a genome-wide scale affords a comprehensive view of the status of the immune system in health and disease. This review summarizes the work that has used this approach to identify therapeutic targets and biomarker signatures in the field of autoimmunity and infectious disease. Recent technological and methodological advances that will carry the blood transcriptome research field forward are also discussed

Hyperoxemia and excess oxygen use in early acute respiratory distress syndrome : Insights from the LUNG SAFE study

Publisher Copyright: © 2020 The Author(s). Copyright: Copyright 2020 Elsevier B.V., All rights reserved.Background: Concerns exist regarding the prevalence and impact of unnecessary oxygen use in patients with acute respiratory distress syndrome (ARDS). We examined this issue in patients with ARDS enrolled in the Large observational study to UNderstand the Global impact of Severe Acute respiratory FailurE (LUNG SAFE) study. Methods: In this secondary analysis of the LUNG SAFE study, we wished to determine the prevalence and the outcomes associated with hyperoxemia on day 1, sustained hyperoxemia, and excessive oxygen use in patients with early ARDS. Patients who fulfilled criteria of ARDS on day 1 and day 2 of acute hypoxemic respiratory failure were categorized based on the presence of hyperoxemia (PaO2 > 100 mmHg) on day 1, sustained (i.e., present on day 1 and day 2) hyperoxemia, or excessive oxygen use (FIO2 ≥ 0.60 during hyperoxemia). Results: Of 2005 patients that met the inclusion criteria, 131 (6.5%) were hypoxemic (PaO2 < 55 mmHg), 607 (30%) had hyperoxemia on day 1, and 250 (12%) had sustained hyperoxemia. Excess FIO2 use occurred in 400 (66%) out of 607 patients with hyperoxemia. Excess FIO2 use decreased from day 1 to day 2 of ARDS, with most hyperoxemic patients on day 2 receiving relatively low FIO2. Multivariate analyses found no independent relationship between day 1 hyperoxemia, sustained hyperoxemia, or excess FIO2 use and adverse clinical outcomes. Mortality was 42% in patients with excess FIO2 use, compared to 39% in a propensity-matched sample of normoxemic (PaO2 55-100 mmHg) patients (P = 0.47). Conclusions: Hyperoxemia and excess oxygen use are both prevalent in early ARDS but are most often non-sustained. No relationship was found between hyperoxemia or excessive oxygen use and patient outcome in this cohort. Trial registration: LUNG-SAFE is registered with ClinicalTrials.gov, NCT02010073publishersversionPeer reviewe

Faithful to the Scriptures, Episode 10: Wisdom Literature (Part 2)

The book of Ecclesiastes tells us that both the wise and the fool, the righteous and the wicked perish in the same way and that everything is vanity. How should we understand this book of the bible?https://digitalcommons.andrews.edu/atsacademy/1009/thumbnail.jp

Faithful to the Scriptures, Episode 13: Daniel (Part 1)

The book of Daniel is full of strange images, visions that contain beasts, statues and other things that seem strange to us, how can we interpret this book of the bible? How can we understand its message for us?https://digitalcommons.andrews.edu/atsacademy/1012/thumbnail.jp

Faithful to the Scriptures, Episode 5: The Pentateuch (Part 1)

Genesis is the first book of the bible and absolutely necessary for our understanding of the rest of the scriptures.https://digitalcommons.andrews.edu/atsacademy/1004/thumbnail.jp