A provisional UniGene clone set based on ESTs from Neurospora crassa

We have constructed a list of N. crassa cDNA clones for which partial sequences exist, toward the goal of maximizing the number of genes represented while avoiding redundancy. This effort employed GenBank sequences from the combined N. crassa EST projects at the University of New Mexico, the University of Oklahoma and Dartmouth College (27,557 ESTs; Nelson et al. 1997 Fungal Genet. Biol.21:348-363; Zhu et al. 2001 Genetics 157: 1057-1065). The current list, subject to ongoing revision, includes 2842 clones and is available at the web site of the Neurospora Genome Project (NGP) at the University of New Mexico (http://www.unm.edu/~ngp/), along with details of its construction. Each cDNA clone in the list represents a unique gene. We have also assembled a UniGene set of cDNA clones for that portion of the UniGene set that is represented in libraries constructed by the NGP at UNM. This UniGene library is comprised of 1786 clones distributed in 20 96-well dishes, and it is available through the Fungal Genetics Stock Center

A Comparison of Consistent Discretizations for Elliptic Problems on Polyhedral Grids

In this work, we review a set of consistent discretizations for second-order elliptic equations, and compare and contrast them with respect to accuracy, monotonicity, and factors affecting their computational cost (degrees of freedom, sparsity, and condition numbers). Our comparisons include the linear and nonlinear TPFA method, multipoint flux-approximation (MPFA-O), mimetic methods, and virtual element methods. We focus on incompressible flow and study the effects of deformed cell geometries and anisotropic permeability.acceptedVersio

Estimates of success in patients with sciatica due to lumbar disc herniation depend upon outcome measure

The objectives were to estimate the cut-off points for success on different sciatica outcome measures and to determine the success rate after an episode of sciatica by using these cut-offs. A 12-month multicenter observational study was conducted on 466 patients with sciatica and lumbar disc herniation. The cut-off values were estimated by ROC curve analyses using Completely recovered or Much better on a 7-point global change scale as external criterion for success. The cut-off values (references in brackets) at 12 months were leg pain VAS 17.5 (0–100), back pain VAS 22.5 (0–100), Sciatica Bothersomeness Index 6.5 (0–24), Maine-Seattle Back Questionnaire 4.5 (0–12), and the SF-36 subscales bodily pain 51.5, and physical functioning 81.7 (0–100, higher values indicate better health). In conclusion, the success rates at 12 months varied from 49 to 58% depending on the measure used. The proposed cut-offs may facilitate the comparison of success rates across studies

Associations between back pain across adulthood and spine shape in early old age in a British birth cohort

© 2018, The Author(s). We aimed to examine whether back pain across adulthood was associated with spine shape at age 60–64 years. Data were from 1405 participants in the MRC National Survey of Health and Development, a nationally representative British birth cohort. Back pain was ascertained during nurse interviews at ages 36, 43, 53 and 60–64 years. Cumulative exposure to back pain was then derived by counting the number of ages at which back pain was reported. Statistical shape modelling was used to characterise thoracolumbar spine shape using lateral dual-energy x-ray absorptiometry images which were ascertained at age 60–64 years. Linear regression models were used to test associations of spine shape modes (SM) with: (1) cumulative exposure to back pain; (2) back pain reports during different periods of adulthood. After adjusting for sex, higher cumulative exposure to back pain across adulthood was associated with wedge-shaped L4-5 disc (lower SM4 scores) and smaller disc spaces (higher SM8 scores) in both sexes. In addition, reporting of back pain at ages 53 and/or 60–64 years was associated with smaller L4-5 disc space (lower SM6 scores) in men but not women. These findings suggest that back pain across adulthood may be associated with specific variations in spine shapes in early old age

Survival of Escherichia coli in the environment: fundamental and public health aspects

In this review, our current understanding of the species Escherichia coli and its persistence in the open environment is examined. E. coli consists of six different subgroups, which are separable by genomic analyses. Strains within each subgroup occupy various ecological niches, and can be broadly characterized by either commensalistic or different pathogenic behaviour. In relevant cases, genomic islands can be pinpointed that underpin the behaviour. Thus, genomic islands of, on the one hand, broad environmental significance, and, on the other hand, virulence, are highlighted in the context of E. coli survival in its niches. A focus is further placed on experimental studies on the survival of the different types of E. coli in soil, manure and water. Overall, the data suggest that E. coli can persist, for varying periods of time, in such terrestrial and aquatic habitats. In particular, the considerable persistence of the pathogenic E. coli O157:H7 is of importance, as its acid tolerance may be expected to confer a fitness asset in the more acidic environments. In this context, the extent to which E. coli interacts with its human/animal host and the organism's survivability in natural environments are compared. In addition, the effect of the diversity and community structure of the indigenous microbiota on the fate of invading E. coli populations in the open environment is discussed. Such a relationship is of importance to our knowledge of both public and environmental health. The ISME Journal (2011) 5, 173-183; doi:10.1038/ismej.2010.80; published online 24 June 2010NATO [ESP.EAP.CLG 981785]; The Soil Biotechnology Foundationinfo:eu-repo/semantics/publishedVersio