2,672 research outputs found
Cellâtype specific visualization and biochemical isolation of endogenous synaptic proteins in mice
In recent years, the remarkable molecular complexity of synapses has been revealed, with over 1000 proteins identified in the synapse proteome. Although it is known that different receptors and other synaptic proteins are present in different types of neurons, the extent of synapse diversity across the brain is largely unknown. This is mainly due to the limitations of current techniques. Here we report an efficient method for the purification of synaptic proteinâcomplexes, fusing a highâaffinity tag to endogenous PSD95 in specific cell types.
We also developed a strategy which enables the visualization of endogenous PSD95 with fluorescentâproteins tag in Creârecombinase expressing cells. We demonstrate the feasibility of proteomic analysis of synaptic proteinâcomplexes and visualization of these in specific cell types. We find that the composition of PSD95âcomplexes purified from specific cell types differs from those extracted from tissues with diverse cellular composition. The results suggest that there might be differential interactions in the PSD95âcomplexes in different brain regions. We have detected differentially interacting proteins by comparing datasets from the whole hippocampus and the CA3 subfield of the hippocampus. Therefore, these novel conditional PSD95 tagging lines will not only serve as powerful tools for precisely dissecting synapse diversity in specific brain regions and subsets of neuronal cells, but also provide an opportunity to better understand brain regionâ and cell typeâspecific alterations associated with various psychiatric/neurological diseases. These newly developed conditional geneâtagging methods can be applied to many different synaptic proteins and will facilitate research on the molecular complexity of synapses
Constraining the dark energy with galaxy clusters X-ray data
The equation of state characterizing the dark energy component is constrained
by combining Chandra observations of the X-ray luminosity of galaxy clusters
with independent measurements of the baryonic matter density and the latest
measurements of the Hubble parameter as given by the HST key project. By
assuming a spatially flat scenario driven by a "quintessence" component with an
equation of state we place the following limits on the
cosmological parameters and : (i) and (1) if the
equation of state of the dark energy is restricted to the interval (\emph{usual} quintessence) and (ii) and
() if violates the null energy condition and assume values (\emph{extended} quintessence or ``phantom'' energy). These results are in
good agreement with independent studies based on supernovae observations,
large-scale structure and the anisotropies of the cosmic background radiation.Comment: 6 pages, 4 figures, LaTe
Time-Dependent Spintronic Transport and Current-Induced Spin Transfer Torque in Magnetic Tunnel Junctions
The responses of the electrical current and the current-induced spin transfer
torque (CISTT) to an ac bias in addition to a dc bias in a magnetic tunnel
junction are investigated by means of the time-dependent nonquilibrium Green
function technique. The time-averaged current (time-averaged CISTT) is
formulated in the form of a summation of dc current (dc CISTT) multiplied by
products of Bessel functions with the energy levels shifted by . The tunneling current can be viewed as to happen between the photonic
sidebands of the two ferromagnets. The electrons can pass through the barrier
easily under high frequencies but difficultly under low frequencies. The tunnel
magnetoresistance almost does not vary with an ac field. It is found that the
spin transfer torque, still being proportional to the electrical current under
an ac bias, can be changed by varying frequency. Low frequencies could yield a
rapid decrease of the spin transfer torque, while a large ac signal leads to
both decrease of the electrical current and the spin torque. If only an ac bias
is present, the spin transfer torque is sharply enhanced at the particular
amplitude and frequency of the ac bias. A nearly linear relation between such
an amplitude and frequency is observed.Comment: 13 pages,8 figure
Anomalous Dynamic Scaling in Locally-Conserved Coarsening of Fractal Clusters
We report two-dimensional phase-field simulations of locally-conserved
coarsening dynamics of random fractal clusters with fractal dimension D=1.7 and
1.5. The correlation function, cluster perimeter and solute mass are measured
as functions of time. Analyzing the correlation function dynamics, we identify
two different time-dependent length scales that exhibit power laws in time. The
exponents of these power laws are independent of D, one of them is apparently
the classic exponent 1/3. The solute mass versus time exhibits dynamic scaling
with a D-dependent exponent, in agreement with a simple scaling theory.Comment: 5 pages, 4 figure
Computational identification of anthocyanin-specific transcription factors using a rice microarray and maximum boundary range algorithm
This study identifies 2,617 candidate genes related to anthocyanin biosynthesis in rice using microarray analysis and a newly developed maximum boundary range algorithm. Three seed developmental stages were examined in white cultivar and two black Dissociation insertion mutants. The resultant 235 transcription factor genes found to be associated with anthocyanin were classified into nine groups. It is compared the 235 genes by transcription factor analysis and 593 genes from among clusters of COGs related to anthocyanin functions. Total 32 genes were found to be expressed commonly. Among these, 9 unknown and hypothetical genes were revealed to be expressed at each developmental stage and were verified by RT-PCR. These genes most likely play regulatory roles in either anthocyanin production or metabolism during flavonoid biosynthesis. While these genes require further validation, our results underline the potential usefulness of the newly developed algorithm
Current lookback time-redshift bounds on dark energy
We investigate observational constraints on dark energy models from lookback
time (LT) estimates of 32 old passive galaxies distributed over the redshift
interval . To build up our LT sample we combine the age
measurements for these 32 objects with estimates of the total age of the
Universe, as obtained from current CMB data. We show that LT data may provide
bounds on the cosmological parameters with accuracy competitive with type Ia
Supernova methods. In order to break possible degeneracies between models
parameters, we also discuss the bounds when our lookback time versus redshift
sample is combined with with the recent measurement of the baryonic acoustic
oscillation peak and the derived age of the Universe from current CMB
measurements.Comment: 6 pages, 4 figures, LaTe
The Deformable Universe
The concept of smooth deformations of a Riemannian manifolds, recently
evidenced by the solution of the Poincar\'e conjecture, is applied to
Einstein's gravitational theory and in particular to the standard FLRW
cosmology. We present a brief review of the deformation of Riemannian geometry,
showing how such deformations can be derived from the Einstein-Hilbert
dynamical principle. We show that such deformations of space-times of general
relativity produce observable effects that can be measured by four-dimensional
observers. In the case of the FLRW cosmology, one such observable effect is
shown to be consistent with the accelerated expansion of the universe.Comment: 20 pages, LaTeX, 3 figure
A Novel Sparse Graphical Approach for Multimodal Brain Connectivity Inference
International audienceDespite the clear potential benefits of combining fMRI and diffusion MRI in learning the neural pathways that underlie brain functions, little methodological progress has been made in this direction. In this paper, we propose a novel multimodal integration approach based on sparse Gaussian graphical model for estimating brain connectivity. Casting functional connectivity estimation as a sparse inverse covariance learning problem, we adapt the level of sparse penalization on each connection based on its anatomical capacity for functional interactions. Functional connections with little anatomical support are thus more heavily penalized. For validation, we showed on real data collected from a cohort of 60 subjects that additionally modeling anatomical capacity significantly increases subject consistency in the detected connection patterns. Moreover, we demonstrated that incorporating a connectivity prior learned with our multimodal connectivity estimation approach improves activation detection
Phonon anomalies and electron-phonon interaction in RuSr_2GdCu_2O_8 ferromagnetic superconductor: Evidence from infrared conductivity
Critical behavior of the infrared reflectivity of RuSr_2GdCu_2O_8 ceramics is
observed near the superconducting T_{SC} = 45 K and magnetic T_M = 133 K
transition temperatures. The optical conductivity reveals the typical features
of the c-axis optical conductivity of strongly underdoped multilayer
superconducting cuprates. The transformation of the Cu-O bending mode at 288
cm^{-1} to a broad absorption peak at the temperatures between T^* = 90 K and
T_{SC} is clearly observed, and is accompanied by the suppression of spectral
weight at low frequencies. The correlated shifts to lower frequencies of the
Ru-related phonon mode at 190 cm^{-1} and the mid-IR band at 4800 cm^{-1} on
decreasing temperature below T_M are observed. It provides experimental
evidence in favor of strong electron-phonon coupling of the charge carriers in
the Ru-O layers which critically depends on the Ru core spin alignment. The
underdoped character of the superconductor is explained by strong hole
depletion of the CuO_2 planes caused by the charge carrier self-trapping at the
Ru moments.Comment: 11 pages incl. 5 figures, submitted to PR
Andreev Reflection in Ferromagnet/Superconductor/Ferromagnet Double Junction Systems
We present a theory of Andreev reflection in a
ferromagnet/superconductor/ferromagnet double junction system. The spin
polarized quasiparticles penetrate to the superconductor in the range of
penetration depth from the interface by the Andreev reflection. When the
thickness of the superconductor is comparable to or smaller than the
penetration depth, the spin polarized quasiparticles pass through the
superconductor and therefore the electric current depends on the relative
orientation of magnetizations of the ferromagnets. The dependences of the
magnetoresistance on the thickness of the superconductor, temperature, the
exchange field of the ferromagnets and the height of the interfacial barriers
are analyzed. Our theory explains recent experimental results well.Comment: 8 pages, 9 figures, submitted to Phys. Rev.
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