Recombination-prone bacterial strains form a reservoir from which epidemic clones emerge in agroecosystems

The acquisition of virulence-related genes through horizontal gene transfer can modify the pathogenic profiles of strains and lead to the emergence of new diseases. Xanthomonas arboricola is a bacterial species largely known for the damage it causes to stone and nut fruit trees worldwide. In addition to these host-specific populations called pathovars, many nonpathogenic strains have been identified in this species. Their evolutionary significance in the context of pathogen emergence is unknown. We looked at seven housekeeping genes amplified from 187 pathogenic and nonpathogenic strains isolated from various plants worldwide to analyze population genetics and recombination dynamics. We also examined the dynamics of the gains and losses of genes associated with life history traits (LHTs) during X. arboricola evolution. We discovered that X. arboricola presents an epidemic population structure. Successful pathovars of trees (i.e. pruni, corylina and juglandis) are epidemic clones whose emergence appears to be linked to the acquisition of eight genes coding for Type III effectors. The other strains of this species are part of a recombinant network, within which LHT-associated genes might have been lost. We suggest that nonpathogenic strains, because of their high genetic diversity and propensity for recombination, may promote the emergence of pathogenic strains

A new access control unit for GANIL and SPIRAL 2

International audienceFor the GANIL safety revaluation and the new project of accelerator SPIRAL 2, it was decided to replace theexisting access control system for radiological controlled areas. These areas are all cyclotron rooms and experimental areas. The existing system is centralized around VME cards. Updating is becoming very problematic. The new UGA (access control unit) will becomposed of a pair of PLC to ensure the safety of each room. It will be supplemented by a system UGB (radiological control unit) that will assure the radiological monitoring of the area concerned

Thomas Decomposition of Algebraic and Differential Systems

In this paper we consider disjoint decomposition of algebraic and non-linear partial differential systems of equations and inequations into so-called simple subsystems. We exploit Thomas decomposition ideas and develop them into a new algorithm. For algebraic systems simplicity means triangularity, squarefreeness and non-vanishing initials. For differential systems the algorithm provides not only algebraic simplicity but also involutivity. The algorithm has been implemented in Maple

Graph products of spheres, associative graded algebras and Hilbert series

Given a finite, simple, vertex-weighted graph, we construct a graded associative (non-commutative) algebra, whose generators correspond to vertices and whose ideal of relations has generators that are graded commutators corresponding to edges. We show that the Hilbert series of this algebra is the inverse of the clique polynomial of the graph. Using this result it easy to recognize if the ideal is inert, from which strong results on the algebra follow. Non-commutative Grobner bases play an important role in our proof. There is an interesting application to toric topology. This algebra arises naturally from a partial product of spheres, which is a special case of a generalized moment-angle complex. We apply our result to the loop-space homology of this space.Comment: 19 pages, v3: elaborated on connections to related work, added more citations, to appear in Mathematische Zeitschrif

On the Regularity Property of Differential Polynomials Modulo Regular Differential Chains

International audienceThis paper provides an algorithm which computes the normal form of a rational differential fraction modulo a regular differential chain if, and only if, this normal form exists. A regularity test for polynomials modulo regular chains is revisited in the nondifferential setting and lifted to differential algebra. A new characterization of regular chains is provided

The effect of a southward interplanetary magnetic field on St\"ormer's allowed regions

The motion of a charged particle in a magnetic dipole has first been studied by Stormer. The different applications of Stormer's theory to aurorae, cosmic rays and Van Allen radiation belt particles are recalled in an historical perspective. In this paper, we expand the Stormer theory in order to take into account the effects produced by an additional uniform and stationary interplanetary magnetic field (IMF) whose orientation is parallel or antiparallel to the magnetic moment of the dipole. A new expression is derived for the Stormer potential taking into account the additional IMF component. It is shown how Stormer's allowed and forbidden zones are influenced by the implementation of a northward or a southward IMF, and how a southward turning of the IMF orientation makes it easier for Solar Energetic Particle and Galactic Cosmic Rays to enter into the inner part of the geomagnetic field along interconnected magnetic field lines.Comment: 24 Pages; 15 Figures; Tutorial Lecture Presented At The Cospar Colloquium "Plasma Processes In Th Near-Earth Space: Interball And Beyond, Sofia, Bulgaria, 5-10 200

Origins of the Ambient Solar Wind: Implications for Space Weather

The Sun's outer atmosphere is heated to temperatures of millions of degrees, and solar plasma flows out into interplanetary space at supersonic speeds. This paper reviews our current understanding of these interrelated problems: coronal heating and the acceleration of the ambient solar wind. We also discuss where the community stands in its ability to forecast how variations in the solar wind (i.e., fast and slow wind streams) impact the Earth. Although the last few decades have seen significant progress in observations and modeling, we still do not have a complete understanding of the relevant physical processes, nor do we have a quantitatively precise census of which coronal structures contribute to specific types of solar wind. Fast streams are known to be connected to the central regions of large coronal holes. Slow streams, however, appear to come from a wide range of sources, including streamers, pseudostreamers, coronal loops, active regions, and coronal hole boundaries. Complicating our understanding even more is the fact that processes such as turbulence, stream-stream interactions, and Coulomb collisions can make it difficult to unambiguously map a parcel measured at 1 AU back down to its coronal source. We also review recent progress -- in theoretical modeling, observational data analysis, and forecasting techniques that sit at the interface between data and theory -- that gives us hope that the above problems are indeed solvable.Comment: Accepted for publication in Space Science Reviews. Special issue connected with a 2016 ISSI workshop on "The Scientific Foundations of Space Weather." 44 pages, 9 figure

Search for supersymmetry with a dominant R-parity violating LQDbar couplings in e+e- collisions at centre-of-mass energies of 130GeV to 172 GeV

A search for pair-production of supersymmetric particles under the assumption that R-parity is violated via a dominant LQDbar coupling has been performed using the data collected by ALEPH at centre-of-mass energies of 130-172 GeV. The observed candidate events in the data are in agreement with the Standard Model expectation. This result is translated into lower limits on the masses of charginos, neutralinos, sleptons, sneutrinos and squarks. For instance, for m_0=500 GeV/c^2 and tan(beta)=sqrt(2) charginos with masses smaller than 81 GeV/c^2 and neutralinos with masses smaller than 29 GeV/c^2 are excluded at the 95% confidence level for any generation structure of the LQDbar coupling.Comment: 32 pages, 30 figure

Fat1 deletion promotes hybrid EMT state, tumour stemness and metastasis

FAT1, which encodes a protocadherin, is one of the most frequently mutated genes in human cancers1–5. However, the role and the molecular mechanisms by which FAT1 mutations control tumour initiation and progression are poorly understood. Here, using mouse models of skin squamous cell carcinoma and lung tumours, we found that deletion of Fat1 accelerates tumour initiation and malignant progression and promotes a hybrid epithelial-to-mesenchymal transition (EMT) phenotype. We also found this hybrid EMT state in FAT1-mutated human squamous cell carcinomas. Skin squamous cell carcinomas in which Fat1 was deleted presented increased tumour stemness and spontaneous metastasis. We performed transcriptional and chromatin profiling combined with proteomic analyses and mechanistic studies, which revealed that loss of function of FAT1 activates a CAMK2–CD44–SRC axis that promotes YAP1 nuclear translocation and ZEB1 expression that stimulates the mesenchymal state. This loss of function also inactivates EZH2, promoting SOX2 expression, which sustains the epithelial state. Our comprehensive analysis identified drug resistance and vulnerabilities in FAT1-deficient tumours, which have important implications for cancer therapy. Our studies reveal that, in mouse and human squamous cell carcinoma, loss of function of FAT1 promotes tumour initiation, progression, invasiveness, stemness and metastasis through the induction of a hybrid EMT state