Computational challenges of systems biology

Progress in the study of biological systems such as the heart, brain, and liver will require computer scientists to work closely with life scientists and mathematicians. Computer science will play a key role in shaping the new discipline of systems biology and addressing the significant computational challenges it poses

Ultraluminous Star-forming Galaxies and Extremely Luminous Warm Molecular Hydrogen Emission at z = 2.16 in the PKS 1138–26 Radio Galaxy Protocluster

A deep Spitzer Infrared Spectrograph map of the PKS 1138–26 galaxy protocluster reveals ultraluminous polycyclic aromatic hydrocarbon (PAH) emission from obscured star formation in three protocluster galaxies, including Hα-emitter (HAE) 229, HAE 131, and the central Spiderweb Galaxy. Star formation rates of ~500-1100 M_☉ yr^(–1) are estimated from the 7.7 μm PAH feature. At such prodigious formation rates, the galaxy stellar masses will double in 0.6-1.1 Gyr. We are viewing the peak epoch of star formation for these protocluster galaxies. However, it appears that extinction of Hα is much greater (up to a factor of 40) in the two ULIRG HAEs compared to the Spiderweb. This may be attributed to different spatial distributions of star formation-nuclear star formation in the HAEs versus extended star formation in accreting satellite galaxies in the Spiderweb. We find extremely luminous mid-IR rotational line emission from warm molecular hydrogen in the Spiderweb Galaxy, with L(H_2 0-0 S(3)) = 1.4 × 10^(44) erg s^(–1) (3.7 × 10^(10) L_☉), ~20 times more luminous than any previously known H2 emission galaxy (MOHEG). Depending on the temperature, this corresponds to a very large mass of >9 × 10^(6)-2 × 10^9 M_☉ of T > 300 K molecular gas, which may be heated by the PKS 1138–26 radio jet, acting to quench nuclear star formation. There is >8 times more warm H_2 at these temperatures in the Spiderweb than what has been seen in low-redshift (z < 0.2) radio galaxies, indicating that the Spiderweb may have a larger reservoir of molecular gas than more evolved radio galaxies. This is the highest redshift galaxy yet in which warm molecular hydrogen has been directly detected

Bursting emission from PSR B0611+22

Over the past decade it has become apparent that a class of `bursting pulsars\u27 exist with the discovery of PSR J1752+2359 and PSR J1938+2213. In these pulsars, a sharp increase in the emission is observed that then tends to systematically drop-off from pulse-to-pulse. In this paper we describe the discovery of such a relationship in high-sensitivity observations of the young (characteristic age of 90,000 yrs) 0.33 s pulsar B0611+22 at both 327 MHz and 1400 MHz with the Arecibo radio telescope. While Nowakowski previously showed that B0611+22 has mode-switching properties, the data presented here show, for the first time, that this pulsar emits bursts with characteristic time-scales of several hundred seconds. At 327 MHz, the pulsar shows steady behaviour in one emission mode which is enhanced by bursting emission slightly offset in pulse phase from this steady emission. Contrastingly at 1400 MHz, the two modes appear to behave in a competing operation while still offset in phase. Using a fluctuation spectrum analysis, we also investigate each mode independently for sub-pulse drifting. Neither emission mode (i.e. during bursts or persistent emission) shows the presence of the drifting sub-pulse phenomenon. The bursting phenomena seen here appears to be a hybrid between bursting seen in other pulsars and the bistable profile illumination behaviour reported in two other pulsars by Rankin et al. Further examples of this cross-frequency behaviour are required, as this phenomenon may be quite common among the pulsar population

Notes on Recent Cases

Notes on recent cases by Edmund McClarnon, Seymour J. Weisberger, John P. Berscheid, Marc Wonderlin, and Edward P. McGuire

Are mungbean-compatible wild bradyrhizobia more resilient to abiotic stress?

Bradyrhizobia required by mungbean for nitrogen fixation can be impacted by abiotic stresses, reducing nitrogen fixation and yield. Wild bradyrhizobia were collected from ten sites in the dry tropics of Queensland and compared with the commercial strain for performance of inoculated mungbeans, under neutral and acid soil conditions. We found thirteen of the fifteen strains tested promoted growth at least as well as the commercial strain under both acid and neutral conditions. Two significantly outperformed the commercial strain under neutral conditions. This study suggests that gains could be made in mungbean performance through use of better-adapted bradyrhizobia

The ATLAS 9.0 GHz Survey of the Extended Chandra Deep Field South: The Faint 9.0 GHz Radio Population

We present a new image of the 9.0 GHz radio emission from the extended Chandra Deep Field South. A total of 181 hours of integration with the Australia Telescope Compact Array has resulted in a 0.276 square degree image with a median sensitivity of $\sim$20 $\mu$Jy/beam rms, for a synthesised beam of 4.0 $\times$ 1.3 arcsec. We present a catalogue of the 9.0 GHz radio sources, identifying 70 source components and 55 individual radio galaxies. Source counts derived from this sample are consistent with those reported in the literature. The observed source counts are also generally consistent with the source counts from simulations of the faint radio population. Using the wealth of multiwavelength data available for this region, we classify the faint 9 GHz population and find that 91% are radio loud AGN, 7% are radio quiet AGN and 2% are star forming galaxies. The 9.0 GHz radio sources were matched to 5.5 and 1.4 GHz sources in the literature and we find a significant fraction of flat or inverted spectrum sources, with 36% of the 9 GHz sources having $\alpha_{5.5GHz}^{9.0GHz}$ $>$ -0.3 (for $S \propto \nu^\alpha$). This flat or inverted population is not well reproduced by current simulations of radio source populations.Comment: 17 pages, 12 figures. Accepted for publication in MNRA