Superimposition of Viral Protein Structures: A Means to Decipher the Phylogenies of Viruses

Superimposition of protein structures is key in unravelling structural homology across proteins whose sequence similarity is lost. Structural comparison provides insights into protein function and evolution. Here, we review some of the original findings and thoughts that have led to the current established structure-based phylogeny of viruses: starting from the original observation that the major capsid proteins of plant and animal viruses possess similar folds, to the idea that each virus has an innate “self”. This latter idea fueled the conceptualization of the PRD1-adenovirus lineage whose members possess a major capsid protein (innate “self”) with a double jelly roll fold. Based on this approach, long-range viral evolutionary relationships can be detected allowing the virosphere to be classified in four structure-based lineages. However, this process is not without its challenges or limitations. As an example of these hurdles, we finally touch on the difficulty of establishing structural “self” traits for enveloped viruses showcasing the coronaviruses but also the power of structure-based analysis in the understanding of emerging viruse

Measurements of Neutrons In A Mixed GammaNeutron Field Using Three Different Types of Detectors

A linear electron accelerator for medical use is a device for the treatment of tumors by collimated beams of electrons and/or photons. These accelerators are devices that employ electromagnetic waves of high frequency, to accelerate electrons that are used directly in the treatment of superficial tumors, or, if they are made to hit them on an appropriate target, they can produce photons of high energy destined to the treatment of deeptumors.Depending on the energy of the electrons and photons and the materials that make up the head of the accelerator and the target, this equipment will produce in addition to the aforementioned radiation, neutron fields of regular intensity. It is necessary to estimate the equivalent dose due to the neutrons themselves, the doses due to the gamma field of neutron capture, produced by the capture of thermal neutrons in the concrete of the bunker, and the gamma doses due to phenomena of neutron activation of elements of the own accelerator. It is therefore important to be able to measure (detect, quantify, dose, etc.) both photons and neutrons in these cases and others more. In this work we use three different detectors, namely a scintillator-photomultiplier system, a fast reading dosimeter and bubble detector. The idea is to measure the radiation separately and compare their results. The results obtained were the mixed gamma-neutron field spectrum, the dose due only to neutrons obtained by the bubble detectors, which is compared to the dose obtained by the second fast reading dosimeters (model 884), plus the dose obtained by the first dosimeters (model 609) and finally the dose obtained by the Victoreen dosimeter

Gamma Radiation Doses Effects on Mechanical Properties and Microwave Absorption Capacity of Rubber Doped Concrete

The main raw material for the construction industry is concrete; whose fundamental components are the fine and coarse aggregates, water and cement. For the obtaining of these materials are necessary activities that generate environmental deterioration, since the aggregates are extracted from quarries or river banks and for each ton made of cement is emitted into the atmosphere a great lot of carbon dioxide. In this way, the present work is developed with the purpose of contributing to the research that can help the conservation of basic natural resources through the use of waste polymers such as waste tire rubber, in the production of concrete, hoping to reduce its harmful environmental impact. This work focuses on the one hand, in the study of the effects of the incorporation to the concrete, of different proportions of scratched rubber coming from waste tires, on its mechanical properties and on its capacity for microwaves absorption. On the other hand, it is also studied the effect of aging by applying different doses of gamma radiation on the before mentioned properties, seeking with this the possibility that it can be used in the construction industry either as structural material or as a coating. Replacements were made between 5% and 25% of rubber in order to do not significantly affecting the mechanical properties of the concrete. The results of the mechanical and microwave tests performed on the different samples with different gamma radiation doses were compared and it was found that open the possibility of research with great benefits such as the use of waste tires in the designing of concrete mixtures and the improvement of its properties. It is considered important to point out the economic benefit in the context of sustainable development, which involves solving the problem of environmental pollution caused by waste tires, to achieve the welfare of the population by improving their quality of life

Maintenance of street lighting systems using mobile phones

There is no doubt that street lighting systems have an important role in cities promoting comfort, as well as enhancing safety and security. These kinds of systems require maintenance in order to guarantee operation and reduce energy consumption. To help with certain maintenance tasks, a new smartphone application has been developed. The aim of this tool is to set up street lighting energy efficiency level at the same time that the illuminance level is evaluated. The benefit of this tool is that maintenance staff can assess energy efficiency on an easy and quick way, achieving a result report. In addition, a new Bluetooth device was created to perform the measurements, being necessary to perform a brief study about its accuracy compared with a mobile phone ambient light sensor and an external sensor

Orientation of Pterin-6-Carboxylic Acid on Gold Capped Silicon Nanopillars Platforms: Surface Enhanced Raman Spectroscopy and Density Functional Theory Studies

The orientation of pterin-6-carboxylic acid on gold nanopillars was investigated by surface enhanced Raman spectroscopy and density functional theory methods. The experimentally vibrations from pterin-6-COOH free and attached to the Au surface display vibration features indicating chemical interaction of the pterin with the metal surface. The spectral feature evidenced that the pterin would adsorb on gold surface with a "lying down" configuration through the high intensity vibration of NH scissoring and rocking OH modes. The orientation study of pterins on gold nanopillars presented herein is believed to lead to new applications in biosensing field for detecting pterins of physiological importance

TRALI: Party of One; Real-Time Hemovigilance Demonstrates Multiple Event-Free Transfusions

Mechele Adrian pictured.https://openworks.mdanderson.org/aprn-week-23/1019/thumbnail.jp

Genetic insights into the globally invasive and taxonomically problematic tree genus Prosopis

Accurate taxonomic identification of alien species is crucial to detect new incursions, prevent or reduce the arrival of new invaders and implement management options such as biological control. Globally, the taxonomy of non-native Prosopis species is problematic due to misidentification and extensive hybridization. We performed a genetic analysis on several Prosopis species, and their putative hybrids, including both native and non-native populations, with a special focus on Prosopis invasions in Eastern Africa (Ethiopia, Kenya and Tanzania). We aimed to clarify the taxonomic placement of non-native populations and to infer the introduction histories of Prosopis in Eastern Africa. DNA sequencing data from nuclear and chloroplast markers showed high homology (almost 100 %) between most species analysed. Analyses based on seven nuclear microsatellites confirmed weak population genetic structure among Prosopis species. Hybrids and polyploid individuals were recorded in both native and non-native populations. Invasive genotypes of Prosopis juliflora in Kenya and Ethiopia could have a similar native Mexican origin, while Tanzanian genotypes likely are from a different source. Native Peruvian Prosopis pallida genotypes showed high similarity with non-invasive genotypes from Kenya. Levels of introduced genetic diversity, relative to native populations, suggest that multiple introductions of P. juliflora and P. pallida occurred in Eastern Africa. Polyploidy may explain the successful invasion of P. juliflora in Eastern Africa. The polyploid P. juliflora was highly differentiated from the rest of the (diploid) species within the genus. The lack of genetic differentiation between most diploid species in their native ranges supports the notion that hybridization between allopatric species may occur frequently when they are co-introduced into non-native areas. For regulatory purposes, we propose to treat diploid Prosopis taxa from the Americas as a single taxonomic unit in non-native ranges.Fil: Castillo, María L.. Stellenbosch University; SudáfricaFil: Schaffner, Urs. CABI's Swiss Centre; SuizaFil: Van Wilgen, Brian W.. Stellenbosch University; SudáfricaFil: Montaño, Noé Manuel. Universidad Autónoma Metropolitana-Iztapalapa; MéxicoFil: Bustamante, Ramiro O.. Universidad de Chile; ChileFil: Cosacov Martinez, Andrea. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; ArgentinaFil: Mathese, Megan J.. Stellenbosch University; SudáfricaFil: Le Roux, Johannes. Stellenbosch University; Sudáfrica. Macquarie University; Australi

A Complete Set of Firmware for the TileCal Read-Out Driver

TileCal is the hadronic tile calorimeter of the ATLAS experiment at LHC/CERN. The Read-Out Driver (ROD) is the main component of the TileCal back-end electronics. The ROD is a VME 64x 9u board with multiple programmable devices which requires a complete set of firmware. This paper describes the firmware and functionalities of all these programmable devices, especially the DSP Processing Units daughterboards where the data processing takes place