A boundary element regularised Stokeslet method applied to cilia and flagella-driven flow

A boundary element implementation of the regularised Stokeslet method of Cortez is applied to cilia and flagella-driven flows in biology. Previously-published approaches implicitly combine the force discretisation and the numerical quadrature used to evaluate boundary integrals. By contrast, a boundary element method can be implemented by discretising the force using basis functions, and calculating integrals using accurate numerical or analytic integration. This substantially weakens the coupling of the mesh size for the force and the regularisation parameter, and greatly reduces the number of degrees of freedom required. When modelling a cilium or flagellum as a one-dimensional filament, the regularisation parameter can be considered a proxy for the body radius, as opposed to being a parameter used to minimise numerical errors. Modelling a patch of cilia, it is found that: (1) For a fixed number of cilia, reducing cilia spacing reduces transport. (2) For fixed patch dimension, increasing cilia number increases the transport, up to a plateau at $9\times 9$ cilia. Modelling a choanoflagellate cell it is found that the presence of a lorica structure significantly affects transport and flow outside the lorica, but does not significantly alter the force experienced by the flagellum.Comment: 20 pages, 7 figures, postprin

Automatic organisation of retrieved images into a hierarchy

Image retrieval is of growing interest to both search engines and academic researchers with increased focus on both content-based and caption-based approaches. Image search, however, is different from document retrieval: users often search a broader set of retrieved images than they would examine returned web pages in a search engine. In this paper, we focus on a concept hierarchy generation approach developed by Sanderson and Croft in 1999, which was used to organise retrieved images in a hierarchy automatically generated from image captions. Thirty participants were recruited for the study. Each of them conducted two different kinds of searching tasks within the system. Results indicated that the user retrieval performance in both interfaces of system is similar. However, the majority of users preferred to use the concept hierarchy to complete their searching tasks and they were satisfied with using the hierarchical menu to organize retrieved results, because the menu appeared to provide a useful summary to help users look through the image results

Designing multilingual information access to Tate Online

The Tate is Britain's premier national art gallery and includes content from internationally-renowned artists such as Constable and Turner. Like most cultural heritage institutions, the Tate provides online access to a large amount of digitized material. Given the international importance of content provided by the Tate Gallery, multilingual access would seem an ideal way in which to increase accessibility to the collections, and thereby increase traffic to the website. In this short paper we propose using the Tate as a case study for cross-language research and evaluation, determining the gallery’s requirements and the multilingual needs of their end-users

Building a diversity featured search system by fusing existing tools

This paper describes our diversity featured retrieval system which are built for the task of ImageCLEFPhoto 2008. Two existing tools are used: Solr and Carrot. We have experimented with different settings of the system to see how the performance changes. The results suggest that the system can indeed increase diversity of the retrieved results and keep the precision about the same

Creating a test collection to evaluate diversity in image retrieval

This paper describes the adaptation of an existing test collection for image retrieval to enable diversity in the results set to be measured. Previous research has shown that a more diverse set of results often satisfies the needs of more users better than standard document rankings. To enable diversity to be quantified, it is necessary to classify images relevant to a given theme to one or more sub-topics or clusters. We describe the challenges in building (as far as we are aware) the first test collection for evaluating diversity in image retrieval. This includes selecting appropriate topics, creating sub-topics, and quantifying the overall effectiveness of a retrieval system. A total of 39 topics were augmented for cluster-based relevance and we also provide an initial analysis of assessor agreement for grouping relevant images into sub-topics or clusters

Following basal stem rot in young oil palm plantings

The PCR primer GanET has previously been shown to be suitable for the specific amplification of DNA from Ganoderma boninense. A DNA extraction and PCR method has been developed that allows for the amplification of the G. boninense DNA from environmental samples of oil palm tissue. The GanET primer reaction was used in conjunction with a palm-sampling programme to investigate the possible infection of young palms through cut frond base surfaces. Ganoderma DNA was detected in frond base material at a greater frequency than would be expected by comparison with current infection levels. Comparisons are made between the height of the frond base infected, the number of frond bases infected, and subsequent development of basal stem rot. The preliminary results suggest that the development of basal stem rot may be more likely to occur when young lower frond bases are infected

The impact of private sector provision on equitable provision of coronary revascularisation

Objective: To investigate the impact of including private sector data on assessments of equity of coronary revascularisation provision using NHS data only. Design: Analyses of Hospital Episodes Statistics and private sector data by age, sex, and PCT of residence. For each PCT, the share of London's total population and revascularisations (all admissions, NHS-funded, and privately-funded admissions) were calculated. GINI coefficients were derived to provide an index of inequality across sub-populations, with parametric bootstrapping to estimate confidence intervals. Setting: London Participants London residents undergoing coronary revascularisation April 2001 - December 2003. Intervention Coronary artery bypass graft or angioplasty Main outcome measures: Directly-standardised revascularisation rates, GINI coefficients. Results: NHS-funded age-standardised revascularisation rates varied from 95.2 to 193.9 per 100,000 and privately funded procedures from 7.6 to 57.6. Although the age distribution did not vary by funding, the proportion of revascularisations among women that were privately funded (11.0%) was lower than among men (17.0%). Privately funded rates were highest in PCTs with the lowest death rates (p=0.053). NHS-funded admission rates were not related to deprivation nor age-standardised deaths rates from coronary heart disease. Privately-funded admission rates were lower in more deprived PCTs. NHS provision was significantly more egalitarian (Gini coefficient 0.12) than the private sector (0.35). Including all procedures was significantly less equal (0.13) than NHS funded care alone. Conclusion: Private provision exacerbates geographical inequalities. Those responsible for commissioning care for defined populations must have access to consistent data on provision of treatment wherever it takes place

Influence of convective transport on tropospheric ozone and its precursors in a chemistry-climate model

The impact of convection on tropospheric O₃ and its precursors has been examined in a coupled chemistry-climate model. There are two ways that convection affects O₃. First, convection affects O₃ by vertical mixing of O₃ itself. Convection lifts lower tropospheric air to regions where the O₃ lifetime is longer, whilst mass-balance subsidence mixes O₃-rich upper tropospheric (UT) air downwards to regions where the O₃ lifetime is shorter. This tends to decrease UT O₃ and the overall tropospheric column of O₃. Secondly, convection affects O₃ by vertical mixing of O₃ precursors. This affects O₃ chemical production and destruction. Convection transports isoprene and its degradation products to the UT where they interact with lightning NO_x to produce PAN, at the expense of NO_x. In our model, we find that convection reduces UT NO_x through this mechanism; convective down-mixing also flattens our imposed profile of lightning emissions, further reducing UT NO_x. Over tropical land, which has large lightning NO_x emissions in the UT, we find convective lofting of NO_x from surface sources appears relatively unimportant. Despite UT NO_x decreases, UT O₃ production increases as a result of UT HO_x increases driven by isoprene oxidation chemistry. However, UT O₃ tends to decrease, as the effect of convective overturning of O₃ itself dominates over changes in O₃ chemistry. Convective transport also reduces UT O₃ in the mid-latitudes resulting in a 13% decrease in the global tropospheric O₃ burden. These results contrast with an earlier study that uses a model of similar chemical complexity. Differences in convection schemes as well as chemistry schemes – in particular isoprene-driven changes are the most likely causes of such discrepancies. Further modelling studies are needed to constrain this uncertainty range