Thick Target Models of Impulsive Chromospheric Flares

The most impulsive flares show large amplitude intensity variations in times of order 10 s. An attempt is made to reproduce the properties of these events with a model in which the heating of a static chromosphere by a nonthermal electron beam is balanced by thermal radiation cooling. The computed results suggest that the assumed static equilibrium may be achieved in some parts of the flares, and indicate improvements necessary for more accurate models of this type of flare

H alpha observations of the 12 August 1975 type 3-RS bursts

H alpha filtergram observations of a number of the Type III-RS (reverse slope) bursts that occurred on August 12, 1975 are presented. Solar radio emission was peculiar on that date in that a large number, and proportion, of the usually rare reverse slope bursts were observed. The radio bursts are shown to coincide in time with a homologous set of H alpha flares located at the limbward edge of spot group Mt. Wilson 19598. A model is proposed in which the reverse slope bursts are the downward branches of U bursts, whose upward branches are hidden behind the coronal density enhancement over the spot group

An imaging vector magnetograph for the next solar maximum

Researchers describe the conceptual design of a new imaging vector magnetograph currently being constructed at the University of Hawaii. The instrument combines a modest solar telescope with a rotating quarter-wave plate, an acousto-optical tunable prefilter as a blocker for a servo-controlled Fabry-Perot etalon, CCD cameras, and on-line digital image processing. Its high spatial resolution (1/2 arcsec pixel size) over a large field of view (5 by 5 arcmin) will be sufficient to significantly measure, for the first time, the magnetic energy dissipated in major solar flares. Its millisecond tunability and wide spectral range (5000 to 7000 A) enable nearly simultaneous vector magnetic field measurements in the gas-pressure-dominated photosphere and magnetically-dominated chromosphere, as well as effective co-alignment with Solar-A's X ray images. Researchers expect to have the instrument in operation at Mees Solar Observatory (Haleakala) in early 1991. They have chosen to use tunable filters as wavelength-selection elements in order to emphasize the spatial relationships between magnetic field elements, and to permit construction of a compact, efficient instrument. This means that spectral information must be obtained from sequences of images, which can cause line profile distortions due to effects of atmospheric seeing

Magnetic Energy and Helicity Budgets in the Active-Region Solar Corona. I. Linear Force-Free Approximation

We self-consistently derive the magnetic energy and relative magnetic helicity budgets of a three-dimensional linear force-free magnetic structure rooted in a lower boundary plane. For the potential magnetic energy we derive a general expression that gives results practically equivalent to those of the magnetic Virial theorem. All magnetic energy and helicity budgets are formulated in terms of surface integrals applied to the lower boundary, thus avoiding computationally intensive three-dimensional magnetic field extrapolations. We analytically and numerically connect our derivations with classical expressions for the magnetic energy and helicity, thus presenting a so-far lacking unified treatment of the energy/helicity budgets in the constant-alpha approximation. Applying our derivations to photospheric vector magnetograms of an eruptive and a noneruptive solar active regions, we find that the most profound quantitative difference between these regions lies in the estimated free magnetic energy and relative magnetic helicity budgets. If this result is verified with a large number of active regions, it will advance our understanding of solar eruptive phenomena. We also find that the constant-alpha approximation gives rise to large uncertainties in the calculation of the free magnetic energy and the relative magnetic helicity. Therefore, care must be exercised when this approximation is applied to photospheric magnetic field observations. Despite its shortcomings, the constant-alpha approximation is adopted here because this study will form the basis of a comprehensive nonlinear force-free description of the energetics and helicity in the active-region solar corona, which is our ultimate objective.Comment: 44 pages, 8 figures, 2 tables. The Astrophysical Journal, in pres

Blockade of HIV-1 Infection of New World Monkey Cells Occurs Primarily at the Stage of Virus Entry

HIV-1 naturally infects chimpanzees and humans, but does not infect Old World monkeys because of replication blocks that occur after virus entry into the cell. To understand the species-specific restrictions operating on HIV-1 infection, the ability of HIV-1 to infect the cells of New World monkeys was examined. Primary cells derived from common marmosets and squirrel monkeys support every phase of HIV-1 replication with the exception of virus entry. Efficient HIV-1 entry typically requires binding of the viral envelope glycoproteins and host cell receptors, CD4 and either CCR5 or CXCR4 chemokine receptors. HIV-1 did not detectably bind or utilize squirrel monkey CD4 for entry, and marmoset CD4 was also very inefficient compared with human CD4. A marmoset CD4 variant, in which residues 48 and 59 were altered to the amino acids found in human CD4, supported HIV-1 entry efficiently. The CXCR4 molecules of both marmosets and squirrel monkeys supported HIV-1 infection, but the CCR5 proteins of both species were only marginally functional. These results demonstrate that the CD4 and CCR5 proteins of New World monkeys represent the major restriction against HIV-1 replication in these primates. Directed adaptation of the HIV-1 envelope glycoproteins to common marmoset receptors might allow the development of New World monkey models of HIV-1 infection

Structural diversity in the type IV pili of multidrug-resistant Acinetobacter

Acinetobacter baumannii is a Gram-negative coccobacillus found primarily in hospital settings that has recently emerged as a source of hospital-acquired infections. A. baumannii expresses a variety of virulence factors, including type IV pili, bacterial extracellular appendages often essential for attachment to host cells. Here, we report the high resolution structures of the major pilin subunit, PilA, from three Acinetobacter strains, demonstrating thatA. baumannii subsets produce morphologically distinct type IV pilin glycoproteins. We examine the consequences of this heterogeneity for protein folding and assembly as well as host-cell adhesion by Acinetobacter. Comparisons of genomic and structural data with pilin proteins from other species of soil gammaproteobacteria suggest that these structural differences stem from evolutionary pressure that has resulted in three distinct classes of type IVa pilins, each found in multiple species

Extreme positive allometry of animal adhesive pads and the size limits of adhesion-based climbing

Organismal functions are size-dependent whenever body surfaces supply body volumes. Larger organisms can develop strongly folded internal surfaces for enhanced diffusion, but in many cases areas cannot be folded so that their enlargement is constrained by anatomy, presenting a problem for larger animals. Here, we study the allometry of adhesive pad area in 225 climbing animal species, covering more than seven orders of magnitude in weight. Across all taxa, adhesive pad area showed extreme positive allometry and scaled with weight, implying a 200-fold increase of relative pad area from mites to geckos. However, allometric scaling coefficients for pad area systematically decreased with taxonomic level, and were close to isometry when evolutionary history was accounted for, indicating that the substantial anatomical changes required to achieve this increase in relative pad area are limited by phylogenetic constraints. Using a comparative phylogenetic approach, we found that the departure from isometry is almost exclusively caused by large differences in size-corrected pad area between arthropods and vertebrates. To mitigate the expected decrease of weight-specific adhesion within closely related taxa where pad area scaled close to isometry, data for several taxa suggest that the pads’ adhesive strength increased for larger animals. The combination of adjustments in relative pad area for distantly related taxa and changes in adhesive strength for closely related groups helps explain how climbing with adhesive pads has evolved in animals varying over seven orders of magnitude in body weight. Our results illustrate the size limits of adhesion-based climbing, with profound implications for large-scale bio-inspired adhesives.We are sincerely grateful to all our colleagues who readily shared published and unpublished data with us: Aaron M. Bauer, Jon Barnes, Niall Crawford, Thomas Endlein, Hanns Hagen Goetzke, Thomas E. Macrini, Anthony P. Russell & Joanna M. Smith. We also thank Casey Gilman, Dylan Briggs, Irina Showalter, Dan King and Mike Imburgia for their assistance with the collection of gecko toepad data. This study was supported by research grants from the UK Biotechnology and Biological Sciences Research Council (BB/I008667/1) to WF, the Human Frontier Science Programme (RGP0034/2012) to DI, AJC and WF, the Denman Baynes Senior Research Fellowship to DL and a Discovery Early Career Research Fellowship (DE120101503) to CJC.This is the author accepted manuscript. The final version is available from the National Academy of Sciences via http://dx.doi.org/ 10.1073/pnas.151945911

The Importance of the Fifth Nucleotide in DNA: Uracil

Uracil is a ribonucleotide found in both DNA and RNA, with the main difference between the two being the presence of thymine in DNA and uracil in RNA. Although thymine and uracil are similar in function and can form the same base pairs with adenine, the presence of uracil in DNA can affect DNA stability and modulate cell-specific functions. Without repair mechanisms to remove uracil from DNA, cytosine deamination can occur, resulting in gene drift that is not tolerable in organisms. While the deamination of cytosine in DNA signals damage, a corresponding deamination in RNA would yield normal RNA constituents. To correct this, uracil DNA glycosylases detect and remove uracil bases from uracil-containing DNA, but not natural thymine-containing DNA. The mechanisms of uracil incorporation into DNA, its roles in DNA, cellular mechanisms to detect and remove uracil, and the clinical utility of uracil in DNA will be discussed in this chapter

Solar Irradiance Variations on Active Region Time Scales

The variations of the total solar irradiance is an important tool for studying the Sun, thanks to the development of very precise sensors such as the ACRIM instrument on board the Solar Maximum Mission. The largest variations of the total irradiance occur on time scales of a few days are caused by solar active regions, especially sunspots. Efforts were made to describe the active region effects on total and spectral irradiance