Wild clocks: preface and glossary

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Quantitative NME microscopy of iron transport in methanogenic aggregates

Transport of micronutrients (iron, cobalt, nickel, etc.) within biofilms matrixes such as methanogenic granules is of high importance, because these are either essential or toxic for the microorganisms living inside the biofilm. The present study demonstrates quantitative measurements of metal transport inside these biofilms using T1 weighted 3D RARE. It is shown that iron(II)-EDTA diffusion within the granule is independent of direction or the inner structure of the granules. Assuming position dependence of the spin-lattice relaxivity, Fick’s law for diffusion in a sphere can be applied to simulate the diffusion within the methanogenic granules under investigation. A relatively low diffusion coefficient of 2.5*10-11 m2·s-1 was obtained for iron diffusion within the methanogenic granul

Nonlinear disintegration of the internal tide

Author Posting. © American Meteorological Society, 2008. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 38 (2008): 686-701, doi:10.1175/2007JPO3826.1.The disintegration of a first-mode internal tide into shorter solitary-like waves is considered. Since observations frequently show both tides and waves with amplitudes beyond the restrictions of weakly nonlinear theory, the evolution is studied using a fully nonlinear, weakly nonhydrostatic two-layer theory that includes rotation. In the hydrostatic limit, the governing equations have periodic, nonlinear inertia–gravity solutions that are explored as models of the nonlinear internal tide. These long waves are shown to be robust to weak nonhydrostatic effects. Numerical solutions show that the disintegration of an initial sinusoidal linear internal tide is closely linked to the presence of these nonlinear waves. The initial tide steepens due to nonlinearity and sheds energy into short solitary waves. The disintegration is halted as the longwave part of the solution settles onto a state close to one of the nonlinear hydrostatic solutions, with the short solitary waves superimposed. The degree of disintegration is a function of initial amplitude of the tide and the properties of the underlying nonlinear hydrostatic solutions, which, depending on stratification and tidal frequency, exist only for a finite range of amplitudes (or energies). There is a lower threshold below which no short solitary waves are produced. However, for initial amplitudes above another threshold, given approximately by the energy of the limiting nonlinear hydrostatic inertia–gravity wave, most of the initial tidal energy goes into solitary waves. Recent observations in the South China Sea are briefly discussed.KRH was supported by a Woods Hole Oceanographic Institution Mellon Independent Study Award and ONR Grant N000140610798

Numerical modelling of physical processes governing larval transport in the southern North Sea

A three-dimensional hydrodynamic model (GETM) was coupled with a particle tracking routine (GITM) to study the inter-annual variability in transport paths of particles in the North Sea and English Channel. For validation, a comparison with observed drifter trajectories is also presented here. This research investigated to what extent variability in the hydrodynamic conditions alone (reflecting passive particle transport) contributed to inter-annual variability in the transport of eggs and larvae. In this idealised study, no a priori selection of specific spawning grounds or periods was made and no active behaviour (vertical migration) or mortality was included. In this study, egg and larval development towards coastal nursery areas was based solely on sea water temperature, while settlement areas were defined by a threshold water depth. Results showed strong inter-annual variability in drift direction and distance, caused by a combination of wind speed and direction. Strong inter-annual variability was observed both in absolute amount of settlement in several coastal areas, and in the relative importance of the different areas. The effects of wind and temperature variability are minor for settlement along the western shores of the North Sea and in the English Channel, but have a very significant impact on settlement along the eastern shores of the North Sea. Years with strong south-westerly winds across the Dover Straight resulted in higher settlement figures along its eastern shores of the North Sea (standard deviation 37% of the mean annual settlement value). Settlement in the western Dutch Wadden Sea did not only show inter-annual variability, but patterns were also variable within each year and revealed seasonal changes in the origin of particles: during winter, stronger currents along with colder temperatures generally result in particles originating from further away

Behavioral Traits are Affected by Selective Breeding for Increased Wheel-Running Behavior in Mice

Voluntary physical activity may be related to personality traits. Here, we investigated these relations in two mouse lines selectively bred for high voluntary wheel-running behavior and in one non-selected control line. Selection lines were more explorative and “information gathering” in the open-field test, either with increased upright positions or horizontal locomotion toward the middle ring. Furthermore, one of the selection lines had an increased risk-taking behavior relative to the control line in approaching a novel object placed in the center of the open field. However, anxiety behavior was increased in selection lines during the plus-maze test. Maze learning was not statistically different among lines, but routine behavior was increased in both selection lines when the maze exit after 2 days of testing was displaced. Specifically, in the displaced maze, selected mice traveled more frequently to the old, habituated exit, bypassing the new exit attached to their home cage. Although the generality of the results would need to be confirmed in future studies including all eight lines in the selection experiment, the increased routine and exploratory behavior (at least in the lines used in the present study) may be adaptive to sustain high activity levels

Internal solitary waves in the Mozambique Channel: Observations and interpretation

This paper presents new results showing that the Sofala shelf in the Mozambique Channel (20°S, 36°E) is a previously unknown “hot spot” for the generation of internal tides and internal waves. We investigate available Envisat advanced synthetic aperture radar imagery of the region, which is capable of showing the surface signatures of the internal waves. This is complemented by modeling of the ray pathways of internal tidal energy propagation, and of the P. G. Baines (1982) barotropic body force, which drives the generation of internal tides near the shelf break. The hot spot region is localized between 20° and 21°S because of the particular nature of the bathymetry there. Farther north and south, the forcing is reduced and insufficient to generate internal solitary waves in the synthetic aperture radar images. The analysis reveals two distinct types of internal wave trains that are observed traveling oceanward away from the shelf break, and we suggest that these result from direct generation at the shelf break and from “local” generation at about 80 km from the shelf break, respectively, because of the surfacing of internal tidal rays at the thermocline. Finally, we have investigated seasonal differences in the wave patterns, which penetrate more extensively into the channel during the southern summer and appear slightly farther to the south during the southern winter. We also conclude that the local generation process is more likely to occur during the winter when the stratification is reduced. <br/

Modification of turbulent dissipation rates by a deep Southern Ocean eddy

The impact of a mesoscale eddy on the magnitude and spatial distribution of diapycnal ocean mixing is investigated using a set of hydrographic and microstructure measurements collected in the Southern Ocean. These data sampled a baroclinic, mid-depth eddy formed during the disintegration of a deep boundary current. Turbulent dissipation is suppressed within the eddy, but is elevated by up to an order of magnitude along the upper and lower eddy boundaries. A ray-tracing approximation is employed asa heuristic device to elucidate how the internal wave field evolves in the ambient velocity and stratification conditions accompanying the eddy. These calculations are consistent with the observations, suggesting reflection of internal wave energy from the eddy center and enhanced breaking through critical layer processes along the eddy boundaries. These results have important implications for understanding where and how internal wave energy is dissipated in the presence of energetic deep geostrophic flows