Modeling Cell-to-Cell Communication Networks Using Response-Time Distributions.

Cell-to-cell communication networks have critical roles in coordinating diverse organismal processes, such as tissue development or immune cell response. However, compared with intracellular signal transduction networks, the function and engineering principles of cell-to-cell communication networks are far less understood. Major complications include: cells are themselves regulated by complex intracellular signaling networks; individual cells are heterogeneous; and output of any one cell can recursively become an additional input signal to other cells. Here, we make use of a framework that treats intracellular signal transduction networks as "black boxes" with characterized input-to-output response relationships. We study simple cell-to-cell communication circuit motifs and find conditions that generate bimodal responses in time, as well as mechanisms for independently controlling synchronization and delay of cell-population responses. We apply our modeling approach to explain otherwise puzzling data on cytokine secretion onset times in T cells. Our approach can be used to predict communication network structure using experimentally accessible input-to-output measurements and without detailed knowledge of intermediate steps

Representation Theory of Twisted Group Double

This text collects useful results concerning the quasi-Hopf algebra \D . We give a review of issues related to its use in conformal theories and physical mathematics. Existence of such algebras based on 3-cocycles with values in ${R} / {Z}$ which mimic for finite groups Chern-Simons terms of gauge theories, open wide perspectives in the so called "classification program". The modularisation theorem proved for quasi-Hopf algebras by two authors some years ago makes the computation of topological invariants possible. An updated, although partial, bibliography of recent developments is provided.Comment: 15 pages, no figur

On Dijkgraaf-Witten Type Invariants

We explicitly construct a series of lattice models based upon the gauge group $Z_{p}$ which have the property of subdivision invariance, when the coupling parameter is quantized and the field configurations are restricted to satisfy a type of mod-$p$ flatness condition. The simplest model of this type yields the Dijkgraaf-Witten invariant of a $3$-manifold and is based upon a single link, or $1$-simplex, field. Depending upon the manifold's dimension, other models may have more than one species of field variable, and these may be based on higher dimensional simplices.Comment: 18 page

Localized radial roll patterns in higher space dimensions

Localized roll patterns are structures that exhibit a spatially periodic profile in their center. When following such patterns in a system parameter in one space dimension, the length of the spatial interval over which these patterns resemble a periodic profile stays either bounded, in which case branches form closed bounded curves (“isolas”), or the length increases to infinity so that branches are unbounded in function space (“snaking”). In two space dimensions, numerical computations show that branches of localized rolls exhibit a more complicated structure in which both isolas and snaking occur. In this paper, we analyse the structure of branches of localized radial roll solutions in dimension 1+ε, with 0 < ε 1, through a perturbation analysis. Our analysis sheds light on some of the features visible in the planar case.http://math.bu.edu/people/mabeck/Bramburgeretal18.pdfFirst author draf

Defect free global minima in Thomson's problem of charges on a sphere

Given $N$ unit points charges on the surface of a unit conducting sphere, what configuration of charges minimizes the Coulombic energy $\sum_{i>j=1}^N 1/r_{ij}$? Due to an exponential rise in good local minima, finding global minima for this problem, or even approaches to do so has proven extremely difficult. For \hbox{$N = 10(h^2+hk+k^2)+ 2$} recent theoretical work based on elasticity theory, and subsequent numerical work has shown, that for $N \sim >500$--1000 adding dislocation defects to a symmetric icosadeltahedral lattice lowers the energy. Here we show that in fact this approach holds for all $N$, and we give a complete or near complete catalogue of defect free global minima.Comment: Revisions in Tables and Reference

Glycosylation pattern of brush border-associated glycoproteins in enterocyte-like cells: involvement of complex-type N-glycans in apical trafficking

We have previously reported that galectin-4, a tandem repeat-type galectin, regulates the raft-dependent delivery of glycoproteins to the apical brush border membrane of enterocyte-like HT-29 cells. N-Acetyllactosamine-containing glycans, known as galectin ligands, were found enriched in detergent-resistant membranes. Here, we analyzed the potential contribution of N-and/ or O-glycans in this mechanism. Structural studies were carried out on the brush border membrane-enriched fraction using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) and nano-ESI-QTOF-MS/MS. The pattern of N-glycans was very heterogeneous, with the presence of high mannose- and hybrid-type glycans as well as a multitude of complex-type glycans. In contrast, the pattern of O-glycans was very simple with the presence of two major core type 1 O-glycans, sialylated and bisialylated T-antigen structures {[}Neu5Ac alpha 2-3Gal beta 1-3GalNAc-ol and Neu5Ac alpha 2-3Gal beta 1 -3(Neu5Ac alpha 2-6)GalNAc-ol]. Thus, N-glycans rather than O-glycans contain the N-acetyllactosamine recognition signals for the lipid raft-based galectin-4-dependent apical delivery. In the presence of 1-deoxymannojirimycin, a drug which inhibits the generation of hybrid-type or complex type N-glycans, the extensively O-glycosylated mucin-like MUC1 glycoprotein was not delivered to the apical brush border but accumulated inside the cells. Altogether, our data demonstrate the crucial role of complex N-glycans in the galectin-4-dependent delivery of glycoproteins to the apical brush border membrane of enterocytic HT-29 cells

A Compact Extreme Scattering Event Cloud Towards AO 0235+164

We present observations of a rare, rapid, high amplitude Extreme Scattering Event toward the compact BL-Lac AO 0235+164 at 6.65 GHz. The ESE cloud is compact; we estimate its diameter between 0.09 and 0.9 AU, and is at a distance of less than 3.6 kpc. Limits on the angular extent of the ESE cloud imply a minimum cloud electron density of ~ 4 x 10^3 cm^-3. Based on the amplitude and timescale of the ESE observed here, we suggest that at least one of the transients reported by Bower et al. (2007) may be attributed to ESEs.Comment: 11 pages, 2 figure

Dual-Frequency VSOP Observations of AO 0235+164

AO 0235+164 is a very compact, flat spectrum radio source identified as a BL Lac object at a redshift of z=0.94. It is one of the most violently variable extragalactic objects at both optical and radio wavelengths. The radio structure of the source revealed by various ground-based VLBI observations is dominated by a nearly unresolved compact component at almost all available frequencies. Dual-frequency space VLBI observations of AO 0235+164 were made with the VSOP mission in January-February 1999. The array of the Japanese HALCA satellite and co-observing ground radio telescopes in Australia, Japan, China and South Africa allowed us to study AO 0235+164 with an unprecedented angular resolution at frequencies of 1.6 and 5 GHz. We report on the sub-milliarcsecond structural properties of the source. The 5-GHz observations led to an estimate of T_B > 5.8 x 10^{13} K for the rest-frame brightness temperature of the core, which is the highest value measured with VSOP to date.Comment: 8 pages, 8 figures, to appear in Publ. Astron. Soc. Japa

Galois Modular Invariants of WZW Models

The set of modular invariants that can be obtained from Galois transformations is investigated systematically for WZW models. It is shown that a large subset of Galois modular invariants coincides with simple current invariants. For algebras of type B and D infinite series of previously unknown exceptional automorphism invariants are found.Comment: phyzzx macros, 38 pages. NIKHEF-H/94-3